DNA sequences identify numerous cryptic species of the vertebrate: A lesson from the gobioid fish Schindleria
Schindleria (Gobioidei, Schindleriidae), believed to include one of the smallest and youngest reproducing vertebrates, is broadly distributed in the Indo-Pacific Oceans, inhabiting coral reef lagoons. They are all characterized by a reduced larval-like form, such as a slender translucent and scalele...
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description | Schindleria (Gobioidei, Schindleriidae), believed to include one of the smallest and youngest reproducing vertebrates, is broadly distributed in the Indo-Pacific Oceans, inhabiting coral reef lagoons. They are all characterized by a reduced larval-like form, such as a slender translucent and scaleless body. The three nominal species recognized in the genus to date have been distinguished by only combination of dorsal and anal fin-ray counts, and the existence of some undescribed species has been suggested in
Schindleria; thus a total picture of species composition of the genus is poorly known. Towards the disclosure of diversity of
Schindleria, a molecular phylogenetic analysis using partial mitochondrial 16S rRNA sequences was conducted for specimens from the Ryukyu and Ogasawara Islands, Japan. This analysis showed clearly that as many as 21 genetically distinguishable species occurred within the geographical areas. The degree of species crypticness of “
S. praematura” [15.0
=
15 (new cryptic species
+
known species)/1 (known species)] is higher than the values of well-known animal examples, such as the pan-mesopelagic bristlemouth fish
Cyclothone alba (5.0) and the South American skipper butterfly
Astraptes fulgerator (10.0). This discovery of many cryptic species in
Schindleria suggests that the use of DNA sequences is necessary for species identification of such morphologically conserved taxa. Because molecular analyses should increase the number of hitherto unnamed and pseudonymous species, especially in tropical areas, it is proposed that DNA-based designation is necessary for such taxa in order to compile the full “species lists”, although there is presently no consensus for the inclusion of DNA sequencing data in the formal descriptions of new species. |
doi_str_mv | 10.1016/j.ympev.2006.12.007 |
format | Article |
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Schindleria; thus a total picture of species composition of the genus is poorly known. Towards the disclosure of diversity of
Schindleria, a molecular phylogenetic analysis using partial mitochondrial 16S rRNA sequences was conducted for specimens from the Ryukyu and Ogasawara Islands, Japan. This analysis showed clearly that as many as 21 genetically distinguishable species occurred within the geographical areas. The degree of species crypticness of “
S. praematura” [15.0
=
15 (new cryptic species
+
known species)/1 (known species)] is higher than the values of well-known animal examples, such as the pan-mesopelagic bristlemouth fish
Cyclothone alba (5.0) and the South American skipper butterfly
Astraptes fulgerator (10.0). This discovery of many cryptic species in
Schindleria suggests that the use of DNA sequences is necessary for species identification of such morphologically conserved taxa. Because molecular analyses should increase the number of hitherto unnamed and pseudonymous species, especially in tropical areas, it is proposed that DNA-based designation is necessary for such taxa in order to compile the full “species lists”, although there is presently no consensus for the inclusion of DNA sequencing data in the formal descriptions of new species.</description><identifier>ISSN: 1055-7903</identifier><identifier>EISSN: 1095-9513</identifier><identifier>DOI: 10.1016/j.ympev.2006.12.007</identifier><identifier>PMID: 17275344</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Animals ; Cryptic species ; Cyclothone alba ; Diversity ; DNA-based designation ; Genetic Variation ; Geography ; Gobioidei ; Haplotypes ; Japan ; Marine ; Molecular phylogeny ; Molecular Sequence Data ; Paedomorphosis ; Perciformes - classification ; Perciformes - genetics ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Schindleria ; Schindleriidae ; Sequence Analysis, DNA ; Vertebrates - classification ; Vertebrates - genetics</subject><ispartof>Molecular phylogenetics and evolution, 2007-07, Vol.44 (1), p.53-62</ispartof><rights>2006 Elsevier Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c388t-ac9aa97150de04adfec38a1c7bf3b8373eb6e2ab6df0ed8458f851d3422249973</citedby><cites>FETCH-LOGICAL-c388t-ac9aa97150de04adfec38a1c7bf3b8373eb6e2ab6df0ed8458f851d3422249973</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ympev.2006.12.007$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,777,781,3537,27905,27906,45976</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17275344$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kon, Takeshi</creatorcontrib><creatorcontrib>Yoshino, Tetsuo</creatorcontrib><creatorcontrib>Mukai, Takahiko</creatorcontrib><creatorcontrib>Nishida, Mutsumi</creatorcontrib><title>DNA sequences identify numerous cryptic species of the vertebrate: A lesson from the gobioid fish Schindleria</title><title>Molecular phylogenetics and evolution</title><addtitle>Mol Phylogenet Evol</addtitle><description>Schindleria (Gobioidei, Schindleriidae), believed to include one of the smallest and youngest reproducing vertebrates, is broadly distributed in the Indo-Pacific Oceans, inhabiting coral reef lagoons. They are all characterized by a reduced larval-like form, such as a slender translucent and scaleless body. The three nominal species recognized in the genus to date have been distinguished by only combination of dorsal and anal fin-ray counts, and the existence of some undescribed species has been suggested in
Schindleria; thus a total picture of species composition of the genus is poorly known. Towards the disclosure of diversity of
Schindleria, a molecular phylogenetic analysis using partial mitochondrial 16S rRNA sequences was conducted for specimens from the Ryukyu and Ogasawara Islands, Japan. This analysis showed clearly that as many as 21 genetically distinguishable species occurred within the geographical areas. The degree of species crypticness of “
S. praematura” [15.0
=
15 (new cryptic species
+
known species)/1 (known species)] is higher than the values of well-known animal examples, such as the pan-mesopelagic bristlemouth fish
Cyclothone alba (5.0) and the South American skipper butterfly
Astraptes fulgerator (10.0). This discovery of many cryptic species in
Schindleria suggests that the use of DNA sequences is necessary for species identification of such morphologically conserved taxa. Because molecular analyses should increase the number of hitherto unnamed and pseudonymous species, especially in tropical areas, it is proposed that DNA-based designation is necessary for such taxa in order to compile the full “species lists”, although there is presently no consensus for the inclusion of DNA sequencing data in the formal descriptions of new species.</description><subject>Animals</subject><subject>Cryptic species</subject><subject>Cyclothone alba</subject><subject>Diversity</subject><subject>DNA-based designation</subject><subject>Genetic Variation</subject><subject>Geography</subject><subject>Gobioidei</subject><subject>Haplotypes</subject><subject>Japan</subject><subject>Marine</subject><subject>Molecular phylogeny</subject><subject>Molecular Sequence Data</subject><subject>Paedomorphosis</subject><subject>Perciformes - classification</subject><subject>Perciformes - genetics</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Schindleria</subject><subject>Schindleriidae</subject><subject>Sequence Analysis, DNA</subject><subject>Vertebrates - classification</subject><subject>Vertebrates - genetics</subject><issn>1055-7903</issn><issn>1095-9513</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU9v1DAQxS0EoqXlE1RCPnFL8J84jpE4rAq0SBUcWs6WY4-7XiVxamdX2m9fb3el3uA01vg3bzTvIXRFSU0Jbb9s6v04w65mhLQ1ZTUh8g06p0SJSgnK3x7eQlRSEX6GPuS8IYRSocR7dEYlk4I3zTkav_9e4QxPW5gsZBwcTEvwezxtR0hxm7FN-3kJFucZbChE9HhZA95BWqBPZoGveIUHyDlO2Kc4vvw-xj7E4LAPeY3v7TpMboAUzCV6582Q4eOpXqC_P388XN9Wd39ufl2v7irLu26pjFXGKEkFcUAa4zyUvqFW9p73HZcc-haY6VvnCbiuEZ3vBHW8YYw1Skl-gT4fdecUy2l50WPIFobBTFCO0pKItmGk-y9IlWzaolpAfgRtijkn8HpOYTRprynRhzj0Rr_EoQ9xaMp0iaNMfTrJb_sR3OvMyf8CfDsCUNzYBUg6F5dLFC4ksIt2MfxzwTPsBZ5i</recordid><startdate>20070701</startdate><enddate>20070701</enddate><creator>Kon, Takeshi</creator><creator>Yoshino, Tetsuo</creator><creator>Mukai, Takahiko</creator><creator>Nishida, Mutsumi</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TM</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20070701</creationdate><title>DNA sequences identify numerous cryptic species of the vertebrate: A lesson from the gobioid fish Schindleria</title><author>Kon, Takeshi ; Yoshino, Tetsuo ; Mukai, Takahiko ; Nishida, Mutsumi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c388t-ac9aa97150de04adfec38a1c7bf3b8373eb6e2ab6df0ed8458f851d3422249973</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Animals</topic><topic>Cryptic species</topic><topic>Cyclothone alba</topic><topic>Diversity</topic><topic>DNA-based designation</topic><topic>Genetic Variation</topic><topic>Geography</topic><topic>Gobioidei</topic><topic>Haplotypes</topic><topic>Japan</topic><topic>Marine</topic><topic>Molecular phylogeny</topic><topic>Molecular Sequence Data</topic><topic>Paedomorphosis</topic><topic>Perciformes - classification</topic><topic>Perciformes - genetics</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Schindleria</topic><topic>Schindleriidae</topic><topic>Sequence Analysis, DNA</topic><topic>Vertebrates - classification</topic><topic>Vertebrates - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kon, Takeshi</creatorcontrib><creatorcontrib>Yoshino, Tetsuo</creatorcontrib><creatorcontrib>Mukai, Takahiko</creatorcontrib><creatorcontrib>Nishida, Mutsumi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular phylogenetics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kon, Takeshi</au><au>Yoshino, Tetsuo</au><au>Mukai, Takahiko</au><au>Nishida, Mutsumi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>DNA sequences identify numerous cryptic species of the vertebrate: A lesson from the gobioid fish Schindleria</atitle><jtitle>Molecular phylogenetics and evolution</jtitle><addtitle>Mol Phylogenet Evol</addtitle><date>2007-07-01</date><risdate>2007</risdate><volume>44</volume><issue>1</issue><spage>53</spage><epage>62</epage><pages>53-62</pages><issn>1055-7903</issn><eissn>1095-9513</eissn><abstract>Schindleria (Gobioidei, Schindleriidae), believed to include one of the smallest and youngest reproducing vertebrates, is broadly distributed in the Indo-Pacific Oceans, inhabiting coral reef lagoons. They are all characterized by a reduced larval-like form, such as a slender translucent and scaleless body. The three nominal species recognized in the genus to date have been distinguished by only combination of dorsal and anal fin-ray counts, and the existence of some undescribed species has been suggested in
Schindleria; thus a total picture of species composition of the genus is poorly known. Towards the disclosure of diversity of
Schindleria, a molecular phylogenetic analysis using partial mitochondrial 16S rRNA sequences was conducted for specimens from the Ryukyu and Ogasawara Islands, Japan. This analysis showed clearly that as many as 21 genetically distinguishable species occurred within the geographical areas. The degree of species crypticness of “
S. praematura” [15.0
=
15 (new cryptic species
+
known species)/1 (known species)] is higher than the values of well-known animal examples, such as the pan-mesopelagic bristlemouth fish
Cyclothone alba (5.0) and the South American skipper butterfly
Astraptes fulgerator (10.0). This discovery of many cryptic species in
Schindleria suggests that the use of DNA sequences is necessary for species identification of such morphologically conserved taxa. Because molecular analyses should increase the number of hitherto unnamed and pseudonymous species, especially in tropical areas, it is proposed that DNA-based designation is necessary for such taxa in order to compile the full “species lists”, although there is presently no consensus for the inclusion of DNA sequencing data in the formal descriptions of new species.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>17275344</pmid><doi>10.1016/j.ympev.2006.12.007</doi><tpages>10</tpages></addata></record> |
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source | MEDLINE; Elsevier ScienceDirect Journals |
subjects | Animals Cryptic species Cyclothone alba Diversity DNA-based designation Genetic Variation Geography Gobioidei Haplotypes Japan Marine Molecular phylogeny Molecular Sequence Data Paedomorphosis Perciformes - classification Perciformes - genetics Phylogeny RNA, Ribosomal, 16S - genetics Schindleria Schindleriidae Sequence Analysis, DNA Vertebrates - classification Vertebrates - genetics |
title | DNA sequences identify numerous cryptic species of the vertebrate: A lesson from the gobioid fish Schindleria |
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