Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome
Marine Biotechnology Center, Korea Ocean Research and Development Institute, Ansan PO Box 29, 425-600, Republic of Korea Correspondence Jung-Hyun Lee jlee{at}kordi.re.kr A marine bacterium, DOKDO 007 T , was isolated from the rhizosphere of the marine alga Ecklonia kurome collected from Dokdo Island...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2007-05, Vol.57 (5), p.1050-1054 |
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| creator | Bae, Seung Seob Kwon, Kae Kyoung Yang, Sung Hyun Lee, Hee-Soon Kim, Sang-Jin Lee, Jung-Hyun |
| description | Marine Biotechnology Center, Korea Ocean Research and Development Institute, Ansan PO Box 29, 425-600, Republic of Korea
Correspondence Jung-Hyun Lee jlee{at}kordi.re.kr
A marine bacterium, DOKDO 007 T , was isolated from the rhizosphere of the marine alga Ecklonia kurome collected from Dokdo Island, Korea, in October 2004. The strain produced orange-coloured colonies on marine agar 2216. 16S rRNA gene sequence analysis indicated that the novel isolate belonged to the family Flavobacteriaceae and showed relatively high sequence similarities with members of the genus Muricauda (92.094.0 %). Phylogenetic analysis based on nearly complete 16S rRNA gene sequences revealed that the novel isolate shared a lineage with members of the genera Muricauda and Costertonia . Cells were aerobic, Gram-negative rods producing non-diffusible carotenoid pigments. In contrast to all other members of the family Flavobacteriaceae , cells of DOKDO 007 T were motile by means of a polar flagellum. Optimal growth occurred in the presence of 3.54 % (w/v) sea salts (corresponding to 2.73.1 % NaCl), at pH 8 and at temperatures of 2629 °C. The novel strain required Ca 2+ ions in addition to NaCl for growth. The dominant fatty acids were iso-15 : 0, iso-15 : 1 10 c and 10-methyl-16 : 0. The major respiratory quinone was MK-6. The DNA G+C content was 56.3 mol%, an unusually high value for members of the family Flavobacteriaceae . On the basis of these polyphasic taxonomic data, strain DOKDO 007 T should be classified as representing a new genus and novel species in the family Flavobacteriaceae , for which the name Flagellimonas eckloniae gen. nov., sp. nov. is proposed. The type strain is DOKDO 007 T (=KCCM 42307 T =JCM 13831 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain DOKDO 007 T is DQ191180 .
Transmission and scanning electron micrographs of cells of strain DOKDO 007 T are available as supplementary material in IJSEM Online. |
| doi_str_mv | 10.1099/ijs.0.64565-0 |
| format | Article |
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Correspondence Jung-Hyun Lee jlee{at}kordi.re.kr
A marine bacterium, DOKDO 007 T , was isolated from the rhizosphere of the marine alga Ecklonia kurome collected from Dokdo Island, Korea, in October 2004. The strain produced orange-coloured colonies on marine agar 2216. 16S rRNA gene sequence analysis indicated that the novel isolate belonged to the family Flavobacteriaceae and showed relatively high sequence similarities with members of the genus Muricauda (92.094.0 %). Phylogenetic analysis based on nearly complete 16S rRNA gene sequences revealed that the novel isolate shared a lineage with members of the genera Muricauda and Costertonia . Cells were aerobic, Gram-negative rods producing non-diffusible carotenoid pigments. In contrast to all other members of the family Flavobacteriaceae , cells of DOKDO 007 T were motile by means of a polar flagellum. Optimal growth occurred in the presence of 3.54 % (w/v) sea salts (corresponding to 2.73.1 % NaCl), at pH 8 and at temperatures of 2629 °C. The novel strain required Ca 2+ ions in addition to NaCl for growth. The dominant fatty acids were iso-15 : 0, iso-15 : 1 10 c and 10-methyl-16 : 0. The major respiratory quinone was MK-6. The DNA G+C content was 56.3 mol%, an unusually high value for members of the family Flavobacteriaceae . On the basis of these polyphasic taxonomic data, strain DOKDO 007 T should be classified as representing a new genus and novel species in the family Flavobacteriaceae , for which the name Flagellimonas eckloniae gen. nov., sp. nov. is proposed. The type strain is DOKDO 007 T (=KCCM 42307 T =JCM 13831 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain DOKDO 007 T is DQ191180 .
Transmission and scanning electron micrographs of cells of strain DOKDO 007 T are available as supplementary material in IJSEM Online.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.64565-0</identifier><identifier>PMID: 17473257</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Bacteria ; Bacterial Typing Techniques ; Bacteriology ; Base Composition ; Biological and medical sciences ; Calcium - metabolism ; Carotenoids - analysis ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Ecklonia kurome ; Fatty Acids - analysis ; Flagellimonas eckloniae ; Flavobacteriaceae ; Flavobacteriaceae - chemistry ; Flavobacteriaceae - classification ; Flavobacteriaceae - isolation & purification ; Flavobacteriaceae - physiology ; Fundamental and applied biological sciences. Psychology ; Genes, rRNA ; Hydrogen-Ion Concentration ; Korea ; Marine ; Microbiology ; Molecular Sequence Data ; Phaeophyceae - microbiology ; Phylogeny ; Pigments, Biological - biosynthesis ; Quinones - analysis ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Sequence Homology, Nucleic Acid ; Sodium Chloride - metabolism ; Systematics ; Temperature</subject><ispartof>International journal of systematic and evolutionary microbiology, 2007-05, Vol.57 (5), p.1050-1054</ispartof><rights>2007 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c490t-71fa887baabb967ba0dcaabac68d075ff6adc015a9c0cb4e33d7da57c5daa343</citedby><cites>FETCH-LOGICAL-c490t-71fa887baabb967ba0dcaabac68d075ff6adc015a9c0cb4e33d7da57c5daa343</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,3734,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18772539$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17473257$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bae, Seung Seob</creatorcontrib><creatorcontrib>Kwon, Kae Kyoung</creatorcontrib><creatorcontrib>Yang, Sung Hyun</creatorcontrib><creatorcontrib>Lee, Hee-Soon</creatorcontrib><creatorcontrib>Kim, Sang-Jin</creatorcontrib><creatorcontrib>Lee, Jung-Hyun</creatorcontrib><title>Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Marine Biotechnology Center, Korea Ocean Research and Development Institute, Ansan PO Box 29, 425-600, Republic of Korea
Correspondence Jung-Hyun Lee jlee{at}kordi.re.kr
A marine bacterium, DOKDO 007 T , was isolated from the rhizosphere of the marine alga Ecklonia kurome collected from Dokdo Island, Korea, in October 2004. The strain produced orange-coloured colonies on marine agar 2216. 16S rRNA gene sequence analysis indicated that the novel isolate belonged to the family Flavobacteriaceae and showed relatively high sequence similarities with members of the genus Muricauda (92.094.0 %). Phylogenetic analysis based on nearly complete 16S rRNA gene sequences revealed that the novel isolate shared a lineage with members of the genera Muricauda and Costertonia . Cells were aerobic, Gram-negative rods producing non-diffusible carotenoid pigments. In contrast to all other members of the family Flavobacteriaceae , cells of DOKDO 007 T were motile by means of a polar flagellum. Optimal growth occurred in the presence of 3.54 % (w/v) sea salts (corresponding to 2.73.1 % NaCl), at pH 8 and at temperatures of 2629 °C. The novel strain required Ca 2+ ions in addition to NaCl for growth. The dominant fatty acids were iso-15 : 0, iso-15 : 1 10 c and 10-methyl-16 : 0. The major respiratory quinone was MK-6. The DNA G+C content was 56.3 mol%, an unusually high value for members of the family Flavobacteriaceae . On the basis of these polyphasic taxonomic data, strain DOKDO 007 T should be classified as representing a new genus and novel species in the family Flavobacteriaceae , for which the name Flagellimonas eckloniae gen. nov., sp. nov. is proposed. The type strain is DOKDO 007 T (=KCCM 42307 T =JCM 13831 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain DOKDO 007 T is DQ191180 .
Transmission and scanning electron micrographs of cells of strain DOKDO 007 T are available as supplementary material in IJSEM Online.</description><subject>Bacteria</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>Calcium - metabolism</subject><subject>Carotenoids - analysis</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Ecklonia kurome</subject><subject>Fatty Acids - analysis</subject><subject>Flagellimonas eckloniae</subject><subject>Flavobacteriaceae</subject><subject>Flavobacteriaceae - chemistry</subject><subject>Flavobacteriaceae - classification</subject><subject>Flavobacteriaceae - isolation & purification</subject><subject>Flavobacteriaceae - physiology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes, rRNA</subject><subject>Hydrogen-Ion Concentration</subject><subject>Korea</subject><subject>Marine</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Phaeophyceae - microbiology</subject><subject>Phylogeny</subject><subject>Pigments, Biological - biosynthesis</subject><subject>Quinones - analysis</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Sodium Chloride - metabolism</subject><subject>Systematics</subject><subject>Temperature</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkkFv1DAQhSMEoqVw5Ip8AXFownhjx8kRVS0gVeLSuzVxxhu3SRzspKj8Fn4s3m6gR07zZH-eGb3nLHvLoeDQNJ_cbSygqISsZA7PslMuqiqXUIrn__SuOslexXgLkA4AXmYnXAlV7qQ6zX5fDbinYXCjnzAyMneDnxwS29NUsMnfF-cszn8VspGin3s3OMNGDG4i1qJZKLh1ZN6ypSdmcXTDA0uN7_12iYaQzpmLfsCFOmaDHx_Z0LtfPs49BTo8v9zGs7s1EfQ6e2FxiPRmq2fZzdXlzcXX_Pr7l28Xn69zIxpYcsUt1rVqEdu2qVKFziSNpqo7UNLaCjsDXGJjwLSCyrJTHUplZIdYivIs-3BsOwf_Y6W46NFFk0zBifwatQJRlaLe_RfkjUpmc57A_Aia4GMMZPUcXPLrQXPQh9h0ik2DfoxNQ-LfbY3XdqTuid5ySsD7DcBocLABJ-PiE1crtZNlk7iPR653-_6nC6RTjqNLa7TOH4ZKpWXaIH2QP5ansh0</recordid><startdate>20070501</startdate><enddate>20070501</enddate><creator>Bae, Seung Seob</creator><creator>Kwon, Kae Kyoung</creator><creator>Yang, Sung Hyun</creator><creator>Lee, Hee-Soon</creator><creator>Kim, Sang-Jin</creator><creator>Lee, Jung-Hyun</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20070501</creationdate><title>Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome</title><author>Bae, Seung Seob ; Kwon, Kae Kyoung ; Yang, Sung Hyun ; Lee, Hee-Soon ; Kim, Sang-Jin ; Lee, Jung-Hyun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c490t-71fa887baabb967ba0dcaabac68d075ff6adc015a9c0cb4e33d7da57c5daa343</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Bacteria</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>Calcium - metabolism</topic><topic>Carotenoids - analysis</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Ecklonia kurome</topic><topic>Fatty Acids - analysis</topic><topic>Flagellimonas eckloniae</topic><topic>Flavobacteriaceae</topic><topic>Flavobacteriaceae - chemistry</topic><topic>Flavobacteriaceae - classification</topic><topic>Flavobacteriaceae - isolation & purification</topic><topic>Flavobacteriaceae - physiology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, rRNA</topic><topic>Hydrogen-Ion Concentration</topic><topic>Korea</topic><topic>Marine</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Phaeophyceae - microbiology</topic><topic>Phylogeny</topic><topic>Pigments, Biological - biosynthesis</topic><topic>Quinones - analysis</topic><topic>RNA, Bacterial - genetics</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>Sodium Chloride - metabolism</topic><topic>Systematics</topic><topic>Temperature</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bae, Seung Seob</creatorcontrib><creatorcontrib>Kwon, Kae Kyoung</creatorcontrib><creatorcontrib>Yang, Sung Hyun</creatorcontrib><creatorcontrib>Lee, Hee-Soon</creatorcontrib><creatorcontrib>Kim, Sang-Jin</creatorcontrib><creatorcontrib>Lee, Jung-Hyun</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bae, Seung Seob</au><au>Kwon, Kae Kyoung</au><au>Yang, Sung Hyun</au><au>Lee, Hee-Soon</au><au>Kim, Sang-Jin</au><au>Lee, Jung-Hyun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2007-05-01</date><risdate>2007</risdate><volume>57</volume><issue>5</issue><spage>1050</spage><epage>1054</epage><pages>1050-1054</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Marine Biotechnology Center, Korea Ocean Research and Development Institute, Ansan PO Box 29, 425-600, Republic of Korea
Correspondence Jung-Hyun Lee jlee{at}kordi.re.kr
A marine bacterium, DOKDO 007 T , was isolated from the rhizosphere of the marine alga Ecklonia kurome collected from Dokdo Island, Korea, in October 2004. The strain produced orange-coloured colonies on marine agar 2216. 16S rRNA gene sequence analysis indicated that the novel isolate belonged to the family Flavobacteriaceae and showed relatively high sequence similarities with members of the genus Muricauda (92.094.0 %). Phylogenetic analysis based on nearly complete 16S rRNA gene sequences revealed that the novel isolate shared a lineage with members of the genera Muricauda and Costertonia . Cells were aerobic, Gram-negative rods producing non-diffusible carotenoid pigments. In contrast to all other members of the family Flavobacteriaceae , cells of DOKDO 007 T were motile by means of a polar flagellum. Optimal growth occurred in the presence of 3.54 % (w/v) sea salts (corresponding to 2.73.1 % NaCl), at pH 8 and at temperatures of 2629 °C. The novel strain required Ca 2+ ions in addition to NaCl for growth. The dominant fatty acids were iso-15 : 0, iso-15 : 1 10 c and 10-methyl-16 : 0. The major respiratory quinone was MK-6. The DNA G+C content was 56.3 mol%, an unusually high value for members of the family Flavobacteriaceae . On the basis of these polyphasic taxonomic data, strain DOKDO 007 T should be classified as representing a new genus and novel species in the family Flavobacteriaceae , for which the name Flagellimonas eckloniae gen. nov., sp. nov. is proposed. The type strain is DOKDO 007 T (=KCCM 42307 T =JCM 13831 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain DOKDO 007 T is DQ191180 .
Transmission and scanning electron micrographs of cells of strain DOKDO 007 T are available as supplementary material in IJSEM Online.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>17473257</pmid><doi>10.1099/ijs.0.64565-0</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | International journal of systematic and evolutionary microbiology, 2007-05, Vol.57 (5), p.1050-1054 |
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| subjects | Bacteria Bacterial Typing Techniques Bacteriology Base Composition Biological and medical sciences Calcium - metabolism Carotenoids - analysis DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Ecklonia kurome Fatty Acids - analysis Flagellimonas eckloniae Flavobacteriaceae Flavobacteriaceae - chemistry Flavobacteriaceae - classification Flavobacteriaceae - isolation & purification Flavobacteriaceae - physiology Fundamental and applied biological sciences. Psychology Genes, rRNA Hydrogen-Ion Concentration Korea Marine Microbiology Molecular Sequence Data Phaeophyceae - microbiology Phylogeny Pigments, Biological - biosynthesis Quinones - analysis RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Sequence Homology, Nucleic Acid Sodium Chloride - metabolism Systematics Temperature |
| title | Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome |
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