Recovery and STR Amplification of DNA from RFLP Membranes
: Restriction fragment length polymorphism (RFLP) techniques were utilized in the forensic DNA community until the mid 1990s when less labor‐intensive polymerase chain reaction short tandem repeat (PCR STR) techniques became available. During the transition from RFLP technology to PCR‐based STR pla...
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Veröffentlicht in: | Journal of forensic sciences 2008-03, Vol.53 (2), p.349-358 |
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description | : Restriction fragment length polymorphism (RFLP) techniques were utilized in the forensic DNA community until the mid 1990s when less labor‐intensive polymerase chain reaction short tandem repeat (PCR STR) techniques became available. During the transition from RFLP technology to PCR‐based STR platforms, a method for comparing RFLP profiles to STR profiles was not developed. While the preferred approach for applying new technology to old cases would be to analyze the original biological stain, this is not always possible. For unsolved cases that previously underwent RFLP analysis, the only DNA remaining may be restriction cut and bound to nylon membranes. These studies investigate several methods for obtaining STR profiles from membrane bound DNA, including removal of bound DNA with bases, acids, detergents, various chemicals, and conventional cell extraction solutions. Direct multiplex STR amplification of template in the membrane‐bound state was also explored. A partial STR profile was obtained from DNA that was recovered from an archived membrane using conventional extraction buffer components, indicating promise for recovering useful STR information from RFLP membranes that have been maintained in long‐term frozen storage. |
doi_str_mv | 10.1111/j.1556-4029.2008.00674.x |
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David ; Andrews, John S. ; Watson, Nigel D.</creator><creatorcontrib>Steadman, Shelly A. ; McDonald, J. David ; Andrews, John S. ; Watson, Nigel D.</creatorcontrib><description>: Restriction fragment length polymorphism (RFLP) techniques were utilized in the forensic DNA community until the mid 1990s when less labor‐intensive polymerase chain reaction short tandem repeat (PCR STR) techniques became available. During the transition from RFLP technology to PCR‐based STR platforms, a method for comparing RFLP profiles to STR profiles was not developed. While the preferred approach for applying new technology to old cases would be to analyze the original biological stain, this is not always possible. For unsolved cases that previously underwent RFLP analysis, the only DNA remaining may be restriction cut and bound to nylon membranes. These studies investigate several methods for obtaining STR profiles from membrane bound DNA, including removal of bound DNA with bases, acids, detergents, various chemicals, and conventional cell extraction solutions. Direct multiplex STR amplification of template in the membrane‐bound state was also explored. A partial STR profile was obtained from DNA that was recovered from an archived membrane using conventional extraction buffer components, indicating promise for recovering useful STR information from RFLP membranes that have been maintained in long‐term frozen storage.</description><identifier>ISSN: 0022-1198</identifier><identifier>EISSN: 1556-4029</identifier><identifier>DOI: 10.1111/j.1556-4029.2008.00674.x</identifier><identifier>PMID: 18366567</identifier><identifier>CODEN: JFSCAS</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>amplification ; Deoxyribonucleic acid ; DNA ; DNA - isolation & purification ; DNA typing ; Female ; forensic science ; Forensic sciences ; Humans ; membrane ; Membranes ; Membranes, Artificial ; Nylons ; Polymerase Chain Reaction ; Polymorphism ; Polymorphism, Restriction Fragment Length ; Preservation, Biological ; restriction fragment length polymorphism ; Studies ; Tandem Repeat Sequences</subject><ispartof>Journal of forensic sciences, 2008-03, Vol.53 (2), p.349-358</ispartof><rights>2008 American Academy of Forensic Sciences</rights><rights>Copyright American Society for Testing and Materials Mar 2008</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4314-e12eee06b5440d6a9a565f80389979d27d5f66fda90a7efd01044f8f9898256a3</citedby><cites>FETCH-LOGICAL-c4314-e12eee06b5440d6a9a565f80389979d27d5f66fda90a7efd01044f8f9898256a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1556-4029.2008.00674.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1556-4029.2008.00674.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18366567$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Steadman, Shelly A.</creatorcontrib><creatorcontrib>McDonald, J. David</creatorcontrib><creatorcontrib>Andrews, John S.</creatorcontrib><creatorcontrib>Watson, Nigel D.</creatorcontrib><title>Recovery and STR Amplification of DNA from RFLP Membranes</title><title>Journal of forensic sciences</title><addtitle>J Forensic Sci</addtitle><description>: Restriction fragment length polymorphism (RFLP) techniques were utilized in the forensic DNA community until the mid 1990s when less labor‐intensive polymerase chain reaction short tandem repeat (PCR STR) techniques became available. During the transition from RFLP technology to PCR‐based STR platforms, a method for comparing RFLP profiles to STR profiles was not developed. While the preferred approach for applying new technology to old cases would be to analyze the original biological stain, this is not always possible. For unsolved cases that previously underwent RFLP analysis, the only DNA remaining may be restriction cut and bound to nylon membranes. These studies investigate several methods for obtaining STR profiles from membrane bound DNA, including removal of bound DNA with bases, acids, detergents, various chemicals, and conventional cell extraction solutions. Direct multiplex STR amplification of template in the membrane‐bound state was also explored. A partial STR profile was obtained from DNA that was recovered from an archived membrane using conventional extraction buffer components, indicating promise for recovering useful STR information from RFLP membranes that have been maintained in long‐term frozen storage.</description><subject>amplification</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA - isolation & purification</subject><subject>DNA typing</subject><subject>Female</subject><subject>forensic science</subject><subject>Forensic sciences</subject><subject>Humans</subject><subject>membrane</subject><subject>Membranes</subject><subject>Membranes, Artificial</subject><subject>Nylons</subject><subject>Polymerase Chain Reaction</subject><subject>Polymorphism</subject><subject>Polymorphism, Restriction Fragment Length</subject><subject>Preservation, Biological</subject><subject>restriction fragment length polymorphism</subject><subject>Studies</subject><subject>Tandem Repeat Sequences</subject><issn>0022-1198</issn><issn>1556-4029</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkMFuEzEQhi0EomnhFZDFgdsuY6_ttSUuoXRTqtCWUAS3kbNrSxt2s8FO2uTtcZqoSJyYi0fy9_8afYRQBjlL836RMylVJoCbnAPoHECVIt8-I6Onj-dkBMB5xpjRJ-Q0xgUkiin2kpwwXSglVTkiZubq4d6FHbXLhn67m9Fxv-pa39Z23Q5LOnj66XpMfRh6Oqumt_SL6-fBLl18RV5420X3-vieke_Vxd35ZTa9mXw-H0-zWhRMZI5x5xyouRQCGmWNlUp6DYU2pjQNLxvplfKNNWBL5xtgIITX3mijuVS2OCPvDr2rMPzeuLjGvo2167p0xLCJWIIoNOMigW__ARfDJizTbciZUSaZkQnSB6gOQ4zBeVyFtrdhhwxw7xYXuFeIe4W4d4uPbnGbom-O_Zt575q_waPMBHw4AA9t53b_XYxX1U1aUjw7xNu4dtunuA2_MJWXEn9cT_Dj5ddbPal-YlX8Ad90k1Q</recordid><startdate>200803</startdate><enddate>200803</enddate><creator>Steadman, Shelly A.</creator><creator>McDonald, J. David</creator><creator>Andrews, John S.</creator><creator>Watson, Nigel D.</creator><general>Blackwell Publishing Ltd</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>K7.</scope><scope>7X8</scope></search><sort><creationdate>200803</creationdate><title>Recovery and STR Amplification of DNA from RFLP Membranes</title><author>Steadman, Shelly A. ; McDonald, J. David ; Andrews, John S. ; Watson, Nigel D.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4314-e12eee06b5440d6a9a565f80389979d27d5f66fda90a7efd01044f8f9898256a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>amplification</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA - isolation & purification</topic><topic>DNA typing</topic><topic>Female</topic><topic>forensic science</topic><topic>Forensic sciences</topic><topic>Humans</topic><topic>membrane</topic><topic>Membranes</topic><topic>Membranes, Artificial</topic><topic>Nylons</topic><topic>Polymerase Chain Reaction</topic><topic>Polymorphism</topic><topic>Polymorphism, Restriction Fragment Length</topic><topic>Preservation, Biological</topic><topic>restriction fragment length polymorphism</topic><topic>Studies</topic><topic>Tandem Repeat Sequences</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Steadman, Shelly A.</creatorcontrib><creatorcontrib>McDonald, J. David</creatorcontrib><creatorcontrib>Andrews, John S.</creatorcontrib><creatorcontrib>Watson, Nigel D.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Criminal Justice (Alumni)</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of forensic sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Steadman, Shelly A.</au><au>McDonald, J. David</au><au>Andrews, John S.</au><au>Watson, Nigel D.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Recovery and STR Amplification of DNA from RFLP Membranes</atitle><jtitle>Journal of forensic sciences</jtitle><addtitle>J Forensic Sci</addtitle><date>2008-03</date><risdate>2008</risdate><volume>53</volume><issue>2</issue><spage>349</spage><epage>358</epage><pages>349-358</pages><issn>0022-1198</issn><eissn>1556-4029</eissn><coden>JFSCAS</coden><abstract>: Restriction fragment length polymorphism (RFLP) techniques were utilized in the forensic DNA community until the mid 1990s when less labor‐intensive polymerase chain reaction short tandem repeat (PCR STR) techniques became available. During the transition from RFLP technology to PCR‐based STR platforms, a method for comparing RFLP profiles to STR profiles was not developed. While the preferred approach for applying new technology to old cases would be to analyze the original biological stain, this is not always possible. For unsolved cases that previously underwent RFLP analysis, the only DNA remaining may be restriction cut and bound to nylon membranes. These studies investigate several methods for obtaining STR profiles from membrane bound DNA, including removal of bound DNA with bases, acids, detergents, various chemicals, and conventional cell extraction solutions. Direct multiplex STR amplification of template in the membrane‐bound state was also explored. A partial STR profile was obtained from DNA that was recovered from an archived membrane using conventional extraction buffer components, indicating promise for recovering useful STR information from RFLP membranes that have been maintained in long‐term frozen storage.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>18366567</pmid><doi>10.1111/j.1556-4029.2008.00674.x</doi><tpages>10</tpages></addata></record> |
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subjects | amplification Deoxyribonucleic acid DNA DNA - isolation & purification DNA typing Female forensic science Forensic sciences Humans membrane Membranes Membranes, Artificial Nylons Polymerase Chain Reaction Polymorphism Polymorphism, Restriction Fragment Length Preservation, Biological restriction fragment length polymorphism Studies Tandem Repeat Sequences |
title | Recovery and STR Amplification of DNA from RFLP Membranes |
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