Complete nucleotide sequence and genome organization of pineapple mealybug wilt-associated virus-1
Pineapple mealybug wilt-associated virus-1 (PMWaV-1; family Closteroviridae, genus Ampelovirus) belongs to a complex of mealybug-transmissible viruses found in pineapple worldwide. In this study, the complete genome of PMWaV-1 was sequenced and found to be 13.1 kb in length, making it the smallest i...
Gespeichert in:
| Veröffentlicht in: | Archives of virology 2008-04, Vol.153 (4), p.707-714 |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 714 |
|---|---|
| container_issue | 4 |
| container_start_page | 707 |
| container_title | Archives of virology |
| container_volume | 153 |
| creator | Melzer, M. J Sether, D. M Karasev, A. V Borth, W Hu, J. S |
| description | Pineapple mealybug wilt-associated virus-1 (PMWaV-1; family Closteroviridae, genus Ampelovirus) belongs to a complex of mealybug-transmissible viruses found in pineapple worldwide. In this study, the complete genome of PMWaV-1 was sequenced and found to be 13.1 kb in length, making it the smallest in the family. The genome encoded seven open reading frames (ORFs) and was unusual for an ampelovirus due to the lack of an intergenic region between the RdRp and p6 ORFs, an ORF encoding a relatively small coat protein (CP), and the absence of an ORF encoding a coat protein duplicate (CPd). Phylogenetic analyses placed PMWaV-1, plum bark necrosis stem pitting-associated virus and some grapevine leafroll-associated viruses in a distinct clade within the genus Ampelovirus. |
| doi_str_mv | 10.1007/s00705-008-0051-8 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_70418349</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>20943214</sourcerecordid><originalsourceid>FETCH-LOGICAL-c455t-3a6c10db956d35fdd10c9767caa46ba49963544e38e7d91867163df2bf064f9f3</originalsourceid><addsrcrecordid>eNqFkU-P1SAUxYnROM-nH8CNEhfuqpcCLSzNi_-SSVzorAkttw2TFiq0mvHTy0tfMokLZwEk8Dvncu8h5CWDdwygfZ_LBrICUGVJVqlH5MAEryvVavWYHICDqFQD6oo8y_kWoFxw-ZRcMVUrLkAfSHeK8zLhijRs_YRx9Q5pxp8bhh6pDY6OGOKMNKbRBv_Hrj4GGge6-IB2KVI6o53uum2kv_20Vjbn2Hu7oqO_fNpyxZ6TJ4OdMr64nEdy8-njj9OX6vrb56-nD9dVL6RcK26bnoHrtGwcl4NzDHrdNm1vrWg6K7RuuBQCucLWaaaaljXcDXU3QCMGPfAjebv7LimW_-fVzD73OE02YNyyaUGw0rV-EKxBlyGWQT4EMq1AtbIu4Jt_wNu4pVC6NTWrectkmfeRsB3qU8w54WCW5Geb7gwDc87T7Hmakqc552nOmlcX462b0d0rLgEWoN6BXJ7CiOm-8v9cX--iwUZjx-SzufleA-OFaZUQwP8CCuizzw</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>212371528</pqid></control><display><type>article</type><title>Complete nucleotide sequence and genome organization of pineapple mealybug wilt-associated virus-1</title><source>MEDLINE</source><source>SpringerLink Journals - AutoHoldings</source><creator>Melzer, M. J ; Sether, D. M ; Karasev, A. V ; Borth, W ; Hu, J. S</creator><creatorcontrib>Melzer, M. J ; Sether, D. M ; Karasev, A. V ; Borth, W ; Hu, J. S</creatorcontrib><description>Pineapple mealybug wilt-associated virus-1 (PMWaV-1; family Closteroviridae, genus Ampelovirus) belongs to a complex of mealybug-transmissible viruses found in pineapple worldwide. In this study, the complete genome of PMWaV-1 was sequenced and found to be 13.1 kb in length, making it the smallest in the family. The genome encoded seven open reading frames (ORFs) and was unusual for an ampelovirus due to the lack of an intergenic region between the RdRp and p6 ORFs, an ORF encoding a relatively small coat protein (CP), and the absence of an ORF encoding a coat protein duplicate (CPd). Phylogenetic analyses placed PMWaV-1, plum bark necrosis stem pitting-associated virus and some grapevine leafroll-associated viruses in a distinct clade within the genus Ampelovirus.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-008-0051-8</identifier><identifier>PMID: 18283409</identifier><language>eng</language><publisher>Vienna: Vienna : Springer Vienna</publisher><subject>Amino Acid Sequence ; Amino acids ; Ananas - virology ; Animals ; Biomedical and Life Sciences ; Biomedicine ; Cloning ; Closteroviridae - classification ; Closteroviridae - genetics ; Genome, Viral ; Genomes ; Hemiptera - virology ; Infectious Diseases ; Medical Microbiology ; Molecular Sequence Data ; Open Reading Frames ; Original Article ; Phylogenetics ; Phylogeny ; Proteins ; Prunus ; RNA polymerase ; Sequence Alignment ; Sequence Analysis, DNA ; Virology ; Viruses ; Vitaceae</subject><ispartof>Archives of virology, 2008-04, Vol.153 (4), p.707-714</ispartof><rights>Springer-Verlag 2008</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c455t-3a6c10db956d35fdd10c9767caa46ba49963544e38e7d91867163df2bf064f9f3</citedby><cites>FETCH-LOGICAL-c455t-3a6c10db956d35fdd10c9767caa46ba49963544e38e7d91867163df2bf064f9f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-008-0051-8$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-008-0051-8$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18283409$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Melzer, M. J</creatorcontrib><creatorcontrib>Sether, D. M</creatorcontrib><creatorcontrib>Karasev, A. V</creatorcontrib><creatorcontrib>Borth, W</creatorcontrib><creatorcontrib>Hu, J. S</creatorcontrib><title>Complete nucleotide sequence and genome organization of pineapple mealybug wilt-associated virus-1</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Pineapple mealybug wilt-associated virus-1 (PMWaV-1; family Closteroviridae, genus Ampelovirus) belongs to a complex of mealybug-transmissible viruses found in pineapple worldwide. In this study, the complete genome of PMWaV-1 was sequenced and found to be 13.1 kb in length, making it the smallest in the family. The genome encoded seven open reading frames (ORFs) and was unusual for an ampelovirus due to the lack of an intergenic region between the RdRp and p6 ORFs, an ORF encoding a relatively small coat protein (CP), and the absence of an ORF encoding a coat protein duplicate (CPd). Phylogenetic analyses placed PMWaV-1, plum bark necrosis stem pitting-associated virus and some grapevine leafroll-associated viruses in a distinct clade within the genus Ampelovirus.</description><subject>Amino Acid Sequence</subject><subject>Amino acids</subject><subject>Ananas - virology</subject><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Cloning</subject><subject>Closteroviridae - classification</subject><subject>Closteroviridae - genetics</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Hemiptera - virology</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Open Reading Frames</subject><subject>Original Article</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Proteins</subject><subject>Prunus</subject><subject>RNA polymerase</subject><subject>Sequence Alignment</subject><subject>Sequence Analysis, DNA</subject><subject>Virology</subject><subject>Viruses</subject><subject>Vitaceae</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqFkU-P1SAUxYnROM-nH8CNEhfuqpcCLSzNi_-SSVzorAkttw2TFiq0mvHTy0tfMokLZwEk8Dvncu8h5CWDdwygfZ_LBrICUGVJVqlH5MAEryvVavWYHICDqFQD6oo8y_kWoFxw-ZRcMVUrLkAfSHeK8zLhijRs_YRx9Q5pxp8bhh6pDY6OGOKMNKbRBv_Hrj4GGge6-IB2KVI6o53uum2kv_20Vjbn2Hu7oqO_fNpyxZ6TJ4OdMr64nEdy8-njj9OX6vrb56-nD9dVL6RcK26bnoHrtGwcl4NzDHrdNm1vrWg6K7RuuBQCucLWaaaaljXcDXU3QCMGPfAjebv7LimW_-fVzD73OE02YNyyaUGw0rV-EKxBlyGWQT4EMq1AtbIu4Jt_wNu4pVC6NTWrectkmfeRsB3qU8w54WCW5Geb7gwDc87T7Hmakqc552nOmlcX462b0d0rLgEWoN6BXJ7CiOm-8v9cX--iwUZjx-SzufleA-OFaZUQwP8CCuizzw</recordid><startdate>20080401</startdate><enddate>20080401</enddate><creator>Melzer, M. J</creator><creator>Sether, D. M</creator><creator>Karasev, A. V</creator><creator>Borth, W</creator><creator>Hu, J. S</creator><general>Vienna : Springer Vienna</general><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7SS</scope><scope>7X8</scope></search><sort><creationdate>20080401</creationdate><title>Complete nucleotide sequence and genome organization of pineapple mealybug wilt-associated virus-1</title><author>Melzer, M. J ; Sether, D. M ; Karasev, A. V ; Borth, W ; Hu, J. S</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c455t-3a6c10db956d35fdd10c9767caa46ba49963544e38e7d91867163df2bf064f9f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Amino Acid Sequence</topic><topic>Amino acids</topic><topic>Ananas - virology</topic><topic>Animals</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Cloning</topic><topic>Closteroviridae - classification</topic><topic>Closteroviridae - genetics</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Hemiptera - virology</topic><topic>Infectious Diseases</topic><topic>Medical Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Open Reading Frames</topic><topic>Original Article</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Proteins</topic><topic>Prunus</topic><topic>RNA polymerase</topic><topic>Sequence Alignment</topic><topic>Sequence Analysis, DNA</topic><topic>Virology</topic><topic>Viruses</topic><topic>Vitaceae</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Melzer, M. J</creatorcontrib><creatorcontrib>Sether, D. M</creatorcontrib><creatorcontrib>Karasev, A. V</creatorcontrib><creatorcontrib>Borth, W</creatorcontrib><creatorcontrib>Hu, J. S</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Melzer, M. J</au><au>Sether, D. M</au><au>Karasev, A. V</au><au>Borth, W</au><au>Hu, J. S</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete nucleotide sequence and genome organization of pineapple mealybug wilt-associated virus-1</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2008-04-01</date><risdate>2008</risdate><volume>153</volume><issue>4</issue><spage>707</spage><epage>714</epage><pages>707-714</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>Pineapple mealybug wilt-associated virus-1 (PMWaV-1; family Closteroviridae, genus Ampelovirus) belongs to a complex of mealybug-transmissible viruses found in pineapple worldwide. In this study, the complete genome of PMWaV-1 was sequenced and found to be 13.1 kb in length, making it the smallest in the family. The genome encoded seven open reading frames (ORFs) and was unusual for an ampelovirus due to the lack of an intergenic region between the RdRp and p6 ORFs, an ORF encoding a relatively small coat protein (CP), and the absence of an ORF encoding a coat protein duplicate (CPd). Phylogenetic analyses placed PMWaV-1, plum bark necrosis stem pitting-associated virus and some grapevine leafroll-associated viruses in a distinct clade within the genus Ampelovirus.</abstract><cop>Vienna</cop><pub>Vienna : Springer Vienna</pub><pmid>18283409</pmid><doi>10.1007/s00705-008-0051-8</doi><tpages>8</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0304-8608 |
| ispartof | Archives of virology, 2008-04, Vol.153 (4), p.707-714 |
| issn | 0304-8608 1432-8798 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_70418349 |
| source | MEDLINE; SpringerLink Journals - AutoHoldings |
| subjects | Amino Acid Sequence Amino acids Ananas - virology Animals Biomedical and Life Sciences Biomedicine Cloning Closteroviridae - classification Closteroviridae - genetics Genome, Viral Genomes Hemiptera - virology Infectious Diseases Medical Microbiology Molecular Sequence Data Open Reading Frames Original Article Phylogenetics Phylogeny Proteins Prunus RNA polymerase Sequence Alignment Sequence Analysis, DNA Virology Viruses Vitaceae |
| title | Complete nucleotide sequence and genome organization of pineapple mealybug wilt-associated virus-1 |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-04T13%3A28%3A56IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Complete%20nucleotide%20sequence%20and%20genome%20organization%20of%20pineapple%20mealybug%20wilt-associated%20virus-1&rft.jtitle=Archives%20of%20virology&rft.au=Melzer,%20M.%20J&rft.date=2008-04-01&rft.volume=153&rft.issue=4&rft.spage=707&rft.epage=714&rft.pages=707-714&rft.issn=0304-8608&rft.eissn=1432-8798&rft_id=info:doi/10.1007/s00705-008-0051-8&rft_dat=%3Cproquest_cross%3E20943214%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=212371528&rft_id=info:pmid/18283409&rfr_iscdi=true |