Lactobacillus farraginis sp. nov. and Lactobacillus parafarraginis sp. nov., heterofermentative lactobacilli isolated from a compost of distilled shochu residue
NODAI Culture Collection Center, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya, Tokyo 156-8502, Japan Correspondence Akihito Endo pegaman{at}hotmail.co.jp Five strains of lactic acid bacteria were isolated from a compost of distilled shochu residue in Japan. The isolates were separate...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2007-04, Vol.57 (4), p.708-712 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Endo, Akihito Okada, Sanae |
| description | NODAI Culture Collection Center, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya, Tokyo 156-8502, Japan
Correspondence Akihito Endo pegaman{at}hotmail.co.jp
Five strains of lactic acid bacteria were isolated from a compost of distilled shochu residue in Japan. The isolates were separated into two groups on the basis of 16S rRNA gene sequence similarity, and two subclusters were formed that comprised micro-organisms closely related to Lactobacillus buchneri , L. diolivorans , L. hilgardii , L. kefiri , L. parabuchneri and L. parakefiri . DNADNA relatedness results revealed that the isolates could be separated into two groups, and these groups correlated well with the subclusters generated using the phylogenetic analysis. Moreover, the levels of DNADNA relatedness showed clear separation of the two groups from their phylogenetic relatives. Therefore, the two groups represent two novel species, for which the names Lactobacillus farraginis sp. nov. (type strain NRIC 0676 T =JCM 14108 T =DSM 18382 T ) and Lactobacillus parafarraginis sp. nov. (type strain NRIC 0677 T =JCM 14109 T =DSM 18390 T ) are proposed.
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains NRIC 0676 T , NRIC 1078, NRIC 0679, NRIC 0677 T and NRIC 0680 are AB262731 AB262735, respectively.
Maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences of the novel strains and related species are available as supplementary figures in IJSEM Online. |
| doi_str_mv | 10.1099/ijs.0.64618-0 |
| format | Article |
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Correspondence Akihito Endo pegaman{at}hotmail.co.jp
Five strains of lactic acid bacteria were isolated from a compost of distilled shochu residue in Japan. The isolates were separated into two groups on the basis of 16S rRNA gene sequence similarity, and two subclusters were formed that comprised micro-organisms closely related to Lactobacillus buchneri , L. diolivorans , L. hilgardii , L. kefiri , L. parabuchneri and L. parakefiri . DNADNA relatedness results revealed that the isolates could be separated into two groups, and these groups correlated well with the subclusters generated using the phylogenetic analysis. Moreover, the levels of DNADNA relatedness showed clear separation of the two groups from their phylogenetic relatives. Therefore, the two groups represent two novel species, for which the names Lactobacillus farraginis sp. nov. (type strain NRIC 0676 T =JCM 14108 T =DSM 18382 T ) and Lactobacillus parafarraginis sp. nov. (type strain NRIC 0677 T =JCM 14109 T =DSM 18390 T ) are proposed.
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains NRIC 0676 T , NRIC 1078, NRIC 0679, NRIC 0677 T and NRIC 0680 are AB262731 AB262735, respectively.
Maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences of the novel strains and related species are available as supplementary figures in IJSEM Online.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.64618-0</identifier><identifier>PMID: 17392191</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Alcoholic Beverages - microbiology ; Bacteriology ; Biological and medical sciences ; DNA, Bacterial - genetics ; DNA, Ribosomal - genetics ; Fermentation ; Fundamental and applied biological sciences. Psychology ; Japan ; Lactobacillus ; Lactobacillus - classification ; Lactobacillus - genetics ; Lactobacillus - isolation & purification ; Lactobacillus - metabolism ; Lactobacillus buchneri ; Microbiology ; Molecular Sequence Data ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2007-04, Vol.57 (4), p.708-712</ispartof><rights>2007 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c489t-74d360afa39ea78a2c984f4255b5e93b6fdae114f71406c5f6e596ea758615143</citedby><cites>FETCH-LOGICAL-c489t-74d360afa39ea78a2c984f4255b5e93b6fdae114f71406c5f6e596ea758615143</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,3734,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18679354$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17392191$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Endo, Akihito</creatorcontrib><creatorcontrib>Okada, Sanae</creatorcontrib><title>Lactobacillus farraginis sp. nov. and Lactobacillus parafarraginis sp. nov., heterofermentative lactobacilli isolated from a compost of distilled shochu residue</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>NODAI Culture Collection Center, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya, Tokyo 156-8502, Japan
Correspondence Akihito Endo pegaman{at}hotmail.co.jp
Five strains of lactic acid bacteria were isolated from a compost of distilled shochu residue in Japan. The isolates were separated into two groups on the basis of 16S rRNA gene sequence similarity, and two subclusters were formed that comprised micro-organisms closely related to Lactobacillus buchneri , L. diolivorans , L. hilgardii , L. kefiri , L. parabuchneri and L. parakefiri . DNADNA relatedness results revealed that the isolates could be separated into two groups, and these groups correlated well with the subclusters generated using the phylogenetic analysis. Moreover, the levels of DNADNA relatedness showed clear separation of the two groups from their phylogenetic relatives. Therefore, the two groups represent two novel species, for which the names Lactobacillus farraginis sp. nov. (type strain NRIC 0676 T =JCM 14108 T =DSM 18382 T ) and Lactobacillus parafarraginis sp. nov. (type strain NRIC 0677 T =JCM 14109 T =DSM 18390 T ) are proposed.
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains NRIC 0676 T , NRIC 1078, NRIC 0679, NRIC 0677 T and NRIC 0680 are AB262731 AB262735, respectively.
Maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences of the novel strains and related species are available as supplementary figures in IJSEM Online.</description><subject>Alcoholic Beverages - microbiology</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fermentation</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Japan</subject><subject>Lactobacillus</subject><subject>Lactobacillus - classification</subject><subject>Lactobacillus - genetics</subject><subject>Lactobacillus - isolation & purification</subject><subject>Lactobacillus - metabolism</subject><subject>Lactobacillus buchneri</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Systematics</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0U2L1TAUBuAiijOOLt1KNjobW5Pmo81yGPyCC250HdL05DZD29Scdgb_jT_VXO_FiyC4SkienJzDWxQvGa0Y1fpduMOKVkoo1pb0UXHJhFKlpFw8_rOv1UXxDPGO0nxA6dPigjVc10yzy-Lnzro1dtaFcdyQeJuS3Yc5IMGlInO8r4ide_K3Wmyy_5BvyQArpOghTTCvdg33QMbzy0ACxtGu0BOf4kQscXFaIq4ketIHXLPJdzhEN2wkAYZ-g-fFE29HhBen9ar49uH919tP5e7Lx8-3N7vSiVavZSN6rmjuimuwTWtrp1vhRS1lJ0HzTvneAmPCN0xQ5aRXILXKVLaKSSb4VfHmWHdJ8fsGuJopoINxtDPEDU1Dec0Y5f-FTCvVNlRlWB6hSxExgTdLCpNNPwyj5pCdydkZan5nZ2j2r06Ft26C_qxPYWXw-gQsOjv6ZGcX8Oxa1WguD6NcH90Q9sNDSGD2ME8ht9GFePhUNkbkgVr-Czz9szE</recordid><startdate>20070401</startdate><enddate>20070401</enddate><creator>Endo, Akihito</creator><creator>Okada, Sanae</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>20070401</creationdate><title>Lactobacillus farraginis sp. nov. and Lactobacillus parafarraginis sp. nov., heterofermentative lactobacilli isolated from a compost of distilled shochu residue</title><author>Endo, Akihito ; Okada, Sanae</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c489t-74d360afa39ea78a2c984f4255b5e93b6fdae114f71406c5f6e596ea758615143</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Alcoholic Beverages - microbiology</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fermentation</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Japan</topic><topic>Lactobacillus</topic><topic>Lactobacillus - classification</topic><topic>Lactobacillus - genetics</topic><topic>Lactobacillus - isolation & purification</topic><topic>Lactobacillus - metabolism</topic><topic>Lactobacillus buchneri</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Endo, Akihito</creatorcontrib><creatorcontrib>Okada, Sanae</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Endo, Akihito</au><au>Okada, Sanae</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Lactobacillus farraginis sp. nov. and Lactobacillus parafarraginis sp. nov., heterofermentative lactobacilli isolated from a compost of distilled shochu residue</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2007-04-01</date><risdate>2007</risdate><volume>57</volume><issue>4</issue><spage>708</spage><epage>712</epage><pages>708-712</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>NODAI Culture Collection Center, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya, Tokyo 156-8502, Japan
Correspondence Akihito Endo pegaman{at}hotmail.co.jp
Five strains of lactic acid bacteria were isolated from a compost of distilled shochu residue in Japan. The isolates were separated into two groups on the basis of 16S rRNA gene sequence similarity, and two subclusters were formed that comprised micro-organisms closely related to Lactobacillus buchneri , L. diolivorans , L. hilgardii , L. kefiri , L. parabuchneri and L. parakefiri . DNADNA relatedness results revealed that the isolates could be separated into two groups, and these groups correlated well with the subclusters generated using the phylogenetic analysis. Moreover, the levels of DNADNA relatedness showed clear separation of the two groups from their phylogenetic relatives. Therefore, the two groups represent two novel species, for which the names Lactobacillus farraginis sp. nov. (type strain NRIC 0676 T =JCM 14108 T =DSM 18382 T ) and Lactobacillus parafarraginis sp. nov. (type strain NRIC 0677 T =JCM 14109 T =DSM 18390 T ) are proposed.
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains NRIC 0676 T , NRIC 1078, NRIC 0679, NRIC 0677 T and NRIC 0680 are AB262731 AB262735, respectively.
Maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences of the novel strains and related species are available as supplementary figures in IJSEM Online.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>17392191</pmid><doi>10.1099/ijs.0.64618-0</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Alcoholic Beverages - microbiology Bacteriology Biological and medical sciences DNA, Bacterial - genetics DNA, Ribosomal - genetics Fermentation Fundamental and applied biological sciences. Psychology Japan Lactobacillus Lactobacillus - classification Lactobacillus - genetics Lactobacillus - isolation & purification Lactobacillus - metabolism Lactobacillus buchneri Microbiology Molecular Sequence Data Phylogeny RNA, Ribosomal, 16S - genetics Systematics |
| title | Lactobacillus farraginis sp. nov. and Lactobacillus parafarraginis sp. nov., heterofermentative lactobacilli isolated from a compost of distilled shochu residue |
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