Pedobacter suwonensis sp. nov., isolated from the rhizosphere of Chinese cabbage (Brassica campestris)
1 Korean Agricultural Culture Collection (KACC), Genetic Resources Division, National Institute of Agricultural Biotechnology, Rural Development Administration (RDA), Suwon 441-707, Korea 2 Applied Microbiology Division, National Institute of Agricultural Science and Technology, RDA, Suwon 441-707,...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2007-03, Vol.57 (3), p.480-484 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Kwon, Soon-Wo Kim, Byung-Yong Lee, Kang-Hyo Jang, Kab-Yeul Seok, Soon-Ja Kwon, Jang-Sik Kim, Wan-Gyu Weon, Hang-Yeon |
| description | 1 Korean Agricultural Culture Collection (KACC), Genetic Resources Division, National Institute of Agricultural Biotechnology, Rural Development Administration (RDA), Suwon 441-707, Korea
2 Applied Microbiology Division, National Institute of Agricultural Science and Technology, RDA, Suwon 441-707, Korea
Correspondence Hang-Yeon Weon hyweon{at}rda.go.kr
A mesophilic bacterium, strain 15-52 T , was isolated from the rhizosphere of Chinese cabbage ( Brassica campestris ). On the basis of phenotypic and genotypic characteristics, the bacterium was identified as representing a novel species belonging to the genus Pedobacter . The strain is non-flagellated, non-spore-forming and grows at temperatures in the range 137 °C. Physiological tests of the strain showed the presence of oxidase, catalase, protease (gelatin and casein hydrolysis), -glucosidase and -galactosidase activities. The highest levels of 16S rRNA gene sequence similarity were found with respect to Pedobacter roseus CL-GP80 T (97.3 %) and Pedobacter sandarakinus DS-27 T (97.2 %). A phylogenetic analysis based on 16S rRNA gene sequence data indicated that strain 15-52 T is a member of the genus Pedobacter . DNADNA hybridization analysis revealed low levels of relatedness ( |
| doi_str_mv | 10.1099/ijs.0.64196-0 |
| format | Article |
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2 Applied Microbiology Division, National Institute of Agricultural Science and Technology, RDA, Suwon 441-707, Korea
Correspondence Hang-Yeon Weon hyweon{at}rda.go.kr
A mesophilic bacterium, strain 15-52 T , was isolated from the rhizosphere of Chinese cabbage ( Brassica campestris ). On the basis of phenotypic and genotypic characteristics, the bacterium was identified as representing a novel species belonging to the genus Pedobacter . The strain is non-flagellated, non-spore-forming and grows at temperatures in the range 137 °C. Physiological tests of the strain showed the presence of oxidase, catalase, protease (gelatin and casein hydrolysis), -glucosidase and -galactosidase activities. The highest levels of 16S rRNA gene sequence similarity were found with respect to Pedobacter roseus CL-GP80 T (97.3 %) and Pedobacter sandarakinus DS-27 T (97.2 %). A phylogenetic analysis based on 16S rRNA gene sequence data indicated that strain 15-52 T is a member of the genus Pedobacter . DNADNA hybridization analysis revealed low levels of relatedness (<42.3 %) between the isolate and two phylogenetically related type strains, P. roseus KCCM 42272 T and P. sandarakinus KCTC 12559 T . The DNA G+C content is 44.2 mol% and the predominant fatty acids are iso-C 15 : 0 (35.4 %), iso-C 15 : 0 2-OH and/or C 16 : 1 7 c (27.8 %) and iso-C 17 : 0 3-OH (15.8 %). On the basis of these data, strain 15-52 T represents a novel species of the genus Pedobacter , for which the name Pedobacter suwonensis sp. nov. is proposed. The type strain is 15-52 T (=KACC 11317 T =DSM 18130 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain 15-52 T is DQ097274 .</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.64196-0</identifier><identifier>PMID: 17329772</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Bacteriology ; Biological and medical sciences ; Brassica - microbiology ; Brassica campestris ; DNA, Bacterial - genetics ; DNA, Ribosomal - genetics ; Fundamental and applied biological sciences. Psychology ; Microbiology ; Molecular Sequence Data ; Pedobacter roseus ; Pedobacter sandarakinus ; Pedobacter suwonensis ; RNA, Ribosomal, 16S - genetics ; Soil Microbiology ; Sphingobacterium - classification ; Sphingobacterium - genetics ; Sphingobacterium - isolation & purification ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2007-03, Vol.57 (3), p.480-484</ispartof><rights>2007 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c489t-461a4d1c10d76218b1a784379cf8c61ebc2ba89a97d4c0b4adeb460fe34158063</citedby><cites>FETCH-LOGICAL-c489t-461a4d1c10d76218b1a784379cf8c61ebc2ba89a97d4c0b4adeb460fe34158063</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,781,785,3747,3748,27926,27927</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18592595$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17329772$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kwon, Soon-Wo</creatorcontrib><creatorcontrib>Kim, Byung-Yong</creatorcontrib><creatorcontrib>Lee, Kang-Hyo</creatorcontrib><creatorcontrib>Jang, Kab-Yeul</creatorcontrib><creatorcontrib>Seok, Soon-Ja</creatorcontrib><creatorcontrib>Kwon, Jang-Sik</creatorcontrib><creatorcontrib>Kim, Wan-Gyu</creatorcontrib><creatorcontrib>Weon, Hang-Yeon</creatorcontrib><title>Pedobacter suwonensis sp. nov., isolated from the rhizosphere of Chinese cabbage (Brassica campestris)</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Korean Agricultural Culture Collection (KACC), Genetic Resources Division, National Institute of Agricultural Biotechnology, Rural Development Administration (RDA), Suwon 441-707, Korea
2 Applied Microbiology Division, National Institute of Agricultural Science and Technology, RDA, Suwon 441-707, Korea
Correspondence Hang-Yeon Weon hyweon{at}rda.go.kr
A mesophilic bacterium, strain 15-52 T , was isolated from the rhizosphere of Chinese cabbage ( Brassica campestris ). On the basis of phenotypic and genotypic characteristics, the bacterium was identified as representing a novel species belonging to the genus Pedobacter . The strain is non-flagellated, non-spore-forming and grows at temperatures in the range 137 °C. Physiological tests of the strain showed the presence of oxidase, catalase, protease (gelatin and casein hydrolysis), -glucosidase and -galactosidase activities. The highest levels of 16S rRNA gene sequence similarity were found with respect to Pedobacter roseus CL-GP80 T (97.3 %) and Pedobacter sandarakinus DS-27 T (97.2 %). A phylogenetic analysis based on 16S rRNA gene sequence data indicated that strain 15-52 T is a member of the genus Pedobacter . DNADNA hybridization analysis revealed low levels of relatedness (<42.3 %) between the isolate and two phylogenetically related type strains, P. roseus KCCM 42272 T and P. sandarakinus KCTC 12559 T . The DNA G+C content is 44.2 mol% and the predominant fatty acids are iso-C 15 : 0 (35.4 %), iso-C 15 : 0 2-OH and/or C 16 : 1 7 c (27.8 %) and iso-C 17 : 0 3-OH (15.8 %). On the basis of these data, strain 15-52 T represents a novel species of the genus Pedobacter , for which the name Pedobacter suwonensis sp. nov. is proposed. The type strain is 15-52 T (=KACC 11317 T =DSM 18130 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain 15-52 T is DQ097274 .</description><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>Brassica - microbiology</subject><subject>Brassica campestris</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Pedobacter roseus</subject><subject>Pedobacter sandarakinus</subject><subject>Pedobacter suwonensis</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Soil Microbiology</subject><subject>Sphingobacterium - classification</subject><subject>Sphingobacterium - genetics</subject><subject>Sphingobacterium - isolation & purification</subject><subject>Systematics</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0cFu1DAQBuAIgWgpHLkiXyitRILtOI59hBUtSJXgAGfLdiYbV0kcPNlW8PR42VV75GRr9Glm7L8oXjNaMar1h3CLFa2kYFqW9ElxyoSUZUNr8fThzuVJ8QLxltJcoPR5ccLamuu25adF_x266KxfIRHc3ccZZgxIcKnIHO-q9yRgHO0KHelTnMg6AElD-BNxGSABiT3ZDGEGBOKtc3YL5OJTsojB21yZFsA1Bbx8WTzr7Yjw6nieFT-vPv_YfClvvl1_3Xy8Kb1Qei2FZFZ0zDPatZIz5Zhtlahb7XvlJQPnubNKW912wlMnbAcuP6mHWrBGUVmfFeeHvkuKv3Z5uJkCehhHO0PcoWkp50px_l_IdCP3G2RYHqBPETFBb5YUJpt-G0bNPgGTEzDU_EvA0OzfHBvv3ATdoz5-eQZvj8Cit2Of7OwDPjrVaN7oJrt3BzeE7XAfEpgtzFPIa7gQ90Ob1tRGKFr_BfvhnLA</recordid><startdate>20070301</startdate><enddate>20070301</enddate><creator>Kwon, Soon-Wo</creator><creator>Kim, Byung-Yong</creator><creator>Lee, Kang-Hyo</creator><creator>Jang, Kab-Yeul</creator><creator>Seok, Soon-Ja</creator><creator>Kwon, Jang-Sik</creator><creator>Kim, Wan-Gyu</creator><creator>Weon, Hang-Yeon</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>20070301</creationdate><title>Pedobacter suwonensis sp. nov., isolated from the rhizosphere of Chinese cabbage (Brassica campestris)</title><author>Kwon, Soon-Wo ; Kim, Byung-Yong ; Lee, Kang-Hyo ; Jang, Kab-Yeul ; Seok, Soon-Ja ; Kwon, Jang-Sik ; Kim, Wan-Gyu ; Weon, Hang-Yeon</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c489t-461a4d1c10d76218b1a784379cf8c61ebc2ba89a97d4c0b4adeb460fe34158063</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>Brassica - microbiology</topic><topic>Brassica campestris</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Pedobacter roseus</topic><topic>Pedobacter sandarakinus</topic><topic>Pedobacter suwonensis</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Soil Microbiology</topic><topic>Sphingobacterium - classification</topic><topic>Sphingobacterium - genetics</topic><topic>Sphingobacterium - isolation & purification</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kwon, Soon-Wo</creatorcontrib><creatorcontrib>Kim, Byung-Yong</creatorcontrib><creatorcontrib>Lee, Kang-Hyo</creatorcontrib><creatorcontrib>Jang, Kab-Yeul</creatorcontrib><creatorcontrib>Seok, Soon-Ja</creatorcontrib><creatorcontrib>Kwon, Jang-Sik</creatorcontrib><creatorcontrib>Kim, Wan-Gyu</creatorcontrib><creatorcontrib>Weon, Hang-Yeon</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kwon, Soon-Wo</au><au>Kim, Byung-Yong</au><au>Lee, Kang-Hyo</au><au>Jang, Kab-Yeul</au><au>Seok, Soon-Ja</au><au>Kwon, Jang-Sik</au><au>Kim, Wan-Gyu</au><au>Weon, Hang-Yeon</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Pedobacter suwonensis sp. nov., isolated from the rhizosphere of Chinese cabbage (Brassica campestris)</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2007-03-01</date><risdate>2007</risdate><volume>57</volume><issue>3</issue><spage>480</spage><epage>484</epage><pages>480-484</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Korean Agricultural Culture Collection (KACC), Genetic Resources Division, National Institute of Agricultural Biotechnology, Rural Development Administration (RDA), Suwon 441-707, Korea
2 Applied Microbiology Division, National Institute of Agricultural Science and Technology, RDA, Suwon 441-707, Korea
Correspondence Hang-Yeon Weon hyweon{at}rda.go.kr
A mesophilic bacterium, strain 15-52 T , was isolated from the rhizosphere of Chinese cabbage ( Brassica campestris ). On the basis of phenotypic and genotypic characteristics, the bacterium was identified as representing a novel species belonging to the genus Pedobacter . The strain is non-flagellated, non-spore-forming and grows at temperatures in the range 137 °C. Physiological tests of the strain showed the presence of oxidase, catalase, protease (gelatin and casein hydrolysis), -glucosidase and -galactosidase activities. The highest levels of 16S rRNA gene sequence similarity were found with respect to Pedobacter roseus CL-GP80 T (97.3 %) and Pedobacter sandarakinus DS-27 T (97.2 %). A phylogenetic analysis based on 16S rRNA gene sequence data indicated that strain 15-52 T is a member of the genus Pedobacter . DNADNA hybridization analysis revealed low levels of relatedness (<42.3 %) between the isolate and two phylogenetically related type strains, P. roseus KCCM 42272 T and P. sandarakinus KCTC 12559 T . The DNA G+C content is 44.2 mol% and the predominant fatty acids are iso-C 15 : 0 (35.4 %), iso-C 15 : 0 2-OH and/or C 16 : 1 7 c (27.8 %) and iso-C 17 : 0 3-OH (15.8 %). On the basis of these data, strain 15-52 T represents a novel species of the genus Pedobacter , for which the name Pedobacter suwonensis sp. nov. is proposed. The type strain is 15-52 T (=KACC 11317 T =DSM 18130 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain 15-52 T is DQ097274 .</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>17329772</pmid><doi>10.1099/ijs.0.64196-0</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Bacteriology Biological and medical sciences Brassica - microbiology Brassica campestris DNA, Bacterial - genetics DNA, Ribosomal - genetics Fundamental and applied biological sciences. Psychology Microbiology Molecular Sequence Data Pedobacter roseus Pedobacter sandarakinus Pedobacter suwonensis RNA, Ribosomal, 16S - genetics Soil Microbiology Sphingobacterium - classification Sphingobacterium - genetics Sphingobacterium - isolation & purification Systematics |
| title | Pedobacter suwonensis sp. nov., isolated from the rhizosphere of Chinese cabbage (Brassica campestris) |
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