Amycolatopsis nigrescens sp. nov., an actinomycete isolated from a Roman catacomb
1 Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e.V., Hans-Knöll-Institut, Beutenbergstrasse 11a, 07745 Jena, Germany 2 Institute of Biological Sciences (Microbiology), Faculty of Science, University of Malaya, 50603 Kuala Lumpur, Malaysia 3 Instituto de Recursos Naturales y Agrob...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2007-03, Vol.57 (3), p.513-519 |
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| creator | Groth, Ingrid Tan, Geok Yuan Annie Gonzalez, Juan M Laiz, Leonila Carlsohn, Marc Rene Schutze, Barbara Wink, Joachim Goodfellow, Michael |
| description | 1 Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e.V., Hans-Knöll-Institut, Beutenbergstrasse 11a, 07745 Jena, Germany
2 Institute of Biological Sciences (Microbiology), Faculty of Science, University of Malaya, 50603 Kuala Lumpur, Malaysia
3 Instituto de Recursos Naturales y Agrobiologia, CSIC, Apartado 1052, 41080 Sevilla, Spain
4 Sanofi-Aventis Deutschland GmbH, Industriepark Hoechst, 65926 Frankfurt (Main), Germany
5 Division of Biology, University of Newcastle, Newcastle upon Tyne NE1 7RU, UK
Correspondence Ingrid Groth Ingrid.Groth{at}hki-jena.de
The taxonomic status of two actinomycetes isolated from the wall of a hypogean Roman catacomb was established based on a polyphasic investigation. The organisms were found to have chemical and morphological markers typical of members of the genus Amycolatopsis . They also shared a range of chemical, molecular and phenotypic markers which served to separate them from representatives of recognized Amycolatopsis species. The new isolates formed a branch in the Amycolatopsis 16S rRNA gene sequence tree with Amycolatopsis minnesotensis NRRL B-24435 T , but this association was not supported by a particularly high bootstrap value or by the product of the maximum-parsimony tree-making algorithm. The organisms were distinguished readily from closely related Amycolatopsis species based on a combination of phenotypic properties and from all Amycolatopsis strains by their characteristic menaquinone profiles, in which tetra-hydrogenated menaquinones with 11 isoprene units predominated. The combined genotypic and phenotypic data indicate that the isolates merit recognition as representing a novel species of the genus Amycolatopsis . The name proposed for this novel species is Amycolatopsis nigrescens sp. nov., with type strain CSC17Ta-90 T (=HKI 0330 T =DSM 44992 T =NRRL B-24473 T ).
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains CSC17Ta-90 T and CSC17Ta-84 are respectively DQ486888 and DQ486887 .
A table giving the cellular fatty acid compositions of strains CSC17Ta-90 T and CSC17Ta-84 and A. minnesotensis NRRL B-24435 T is available as supplementary material in IJSEM Online. |
| doi_str_mv | 10.1099/ijs.0.64602-0 |
| format | Article |
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2 Institute of Biological Sciences (Microbiology), Faculty of Science, University of Malaya, 50603 Kuala Lumpur, Malaysia
3 Instituto de Recursos Naturales y Agrobiologia, CSIC, Apartado 1052, 41080 Sevilla, Spain
4 Sanofi-Aventis Deutschland GmbH, Industriepark Hoechst, 65926 Frankfurt (Main), Germany
5 Division of Biology, University of Newcastle, Newcastle upon Tyne NE1 7RU, UK
Correspondence Ingrid Groth Ingrid.Groth{at}hki-jena.de
The taxonomic status of two actinomycetes isolated from the wall of a hypogean Roman catacomb was established based on a polyphasic investigation. The organisms were found to have chemical and morphological markers typical of members of the genus Amycolatopsis . They also shared a range of chemical, molecular and phenotypic markers which served to separate them from representatives of recognized Amycolatopsis species. The new isolates formed a branch in the Amycolatopsis 16S rRNA gene sequence tree with Amycolatopsis minnesotensis NRRL B-24435 T , but this association was not supported by a particularly high bootstrap value or by the product of the maximum-parsimony tree-making algorithm. The organisms were distinguished readily from closely related Amycolatopsis species based on a combination of phenotypic properties and from all Amycolatopsis strains by their characteristic menaquinone profiles, in which tetra-hydrogenated menaquinones with 11 isoprene units predominated. The combined genotypic and phenotypic data indicate that the isolates merit recognition as representing a novel species of the genus Amycolatopsis . The name proposed for this novel species is Amycolatopsis nigrescens sp. nov., with type strain CSC17Ta-90 T (=HKI 0330 T =DSM 44992 T =NRRL B-24473 T ).
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains CSC17Ta-90 T and CSC17Ta-84 are respectively DQ486888 and DQ486887 .
A table giving the cellular fatty acid compositions of strains CSC17Ta-90 T and CSC17Ta-84 and A. minnesotensis NRRL B-24435 T is available as supplementary material in IJSEM Online.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.64602-0</identifier><identifier>PMID: 17329776</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Actinomycetales - classification ; Actinomycetales - genetics ; Actinomycetales - isolation & purification ; Amycolatopsis nigrescens ; Bacteriology ; Biological and medical sciences ; Burial ; DNA, Bacterial - genetics ; DNA, Ribosomal - genetics ; Fundamental and applied biological sciences. Psychology ; Genotype ; Humans ; Microbiology ; Molecular Sequence Data ; Phenotype ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Roman World ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2007-03, Vol.57 (3), p.513-519</ispartof><rights>2007 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c423t-32b25ba501c0a1b163d663f588880a7f240a6476125eff764fd559e873b74fc13</citedby><cites>FETCH-LOGICAL-c423t-32b25ba501c0a1b163d663f588880a7f240a6476125eff764fd559e873b74fc13</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,3734,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18592599$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17329776$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Groth, Ingrid</creatorcontrib><creatorcontrib>Tan, Geok Yuan Annie</creatorcontrib><creatorcontrib>Gonzalez, Juan M</creatorcontrib><creatorcontrib>Laiz, Leonila</creatorcontrib><creatorcontrib>Carlsohn, Marc Rene</creatorcontrib><creatorcontrib>Schutze, Barbara</creatorcontrib><creatorcontrib>Wink, Joachim</creatorcontrib><creatorcontrib>Goodfellow, Michael</creatorcontrib><title>Amycolatopsis nigrescens sp. nov., an actinomycete isolated from a Roman catacomb</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e.V., Hans-Knöll-Institut, Beutenbergstrasse 11a, 07745 Jena, Germany
2 Institute of Biological Sciences (Microbiology), Faculty of Science, University of Malaya, 50603 Kuala Lumpur, Malaysia
3 Instituto de Recursos Naturales y Agrobiologia, CSIC, Apartado 1052, 41080 Sevilla, Spain
4 Sanofi-Aventis Deutschland GmbH, Industriepark Hoechst, 65926 Frankfurt (Main), Germany
5 Division of Biology, University of Newcastle, Newcastle upon Tyne NE1 7RU, UK
Correspondence Ingrid Groth Ingrid.Groth{at}hki-jena.de
The taxonomic status of two actinomycetes isolated from the wall of a hypogean Roman catacomb was established based on a polyphasic investigation. The organisms were found to have chemical and morphological markers typical of members of the genus Amycolatopsis . They also shared a range of chemical, molecular and phenotypic markers which served to separate them from representatives of recognized Amycolatopsis species. The new isolates formed a branch in the Amycolatopsis 16S rRNA gene sequence tree with Amycolatopsis minnesotensis NRRL B-24435 T , but this association was not supported by a particularly high bootstrap value or by the product of the maximum-parsimony tree-making algorithm. The organisms were distinguished readily from closely related Amycolatopsis species based on a combination of phenotypic properties and from all Amycolatopsis strains by their characteristic menaquinone profiles, in which tetra-hydrogenated menaquinones with 11 isoprene units predominated. The combined genotypic and phenotypic data indicate that the isolates merit recognition as representing a novel species of the genus Amycolatopsis . The name proposed for this novel species is Amycolatopsis nigrescens sp. nov., with type strain CSC17Ta-90 T (=HKI 0330 T =DSM 44992 T =NRRL B-24473 T ).
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains CSC17Ta-90 T and CSC17Ta-84 are respectively DQ486888 and DQ486887 .
A table giving the cellular fatty acid compositions of strains CSC17Ta-90 T and CSC17Ta-84 and A. minnesotensis NRRL B-24435 T is available as supplementary material in IJSEM Online.</description><subject>Actinomycetales - classification</subject><subject>Actinomycetales - genetics</subject><subject>Actinomycetales - isolation & purification</subject><subject>Amycolatopsis nigrescens</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>Burial</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genotype</subject><subject>Humans</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Phenotype</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Roman World</subject><subject>Systematics</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0E1PGzEQBmALgQiFHrkiX2gv3e34O3uMon4gRUKt2rPldexgtLsO9qaIf49DVuRYX8aynhmPXoSuCdQEmuZreMw11JJLoBWcoAvCpawEMH76fqdyhj7k_AhQHgDO0YwoRhul5AX6tehfbOzMGLc5ZDyETXLZuiHjvK3xEP_VX7AZsLFjGGKhbnQ45H2DW2OfYo8N_h37QqwZjY19e4XOvOmy-zjVS_T3-7c_y5_V6v7H3XKxqiynbKwYbalojQBiwZCWSLaWknkxLweM8pSDkVxJQoXzXknu10I0bq5Yq7i3hF2iT4e52xSfdi6Pug9l864zg4u7rBVQyjn7PySNkESReYHVAdoUc07O620KvUkvmoDeh61L2Br0W9gair-ZBu_a3q2Pekq3gNsJmGxN55MZbMhHNxcNFU1T3OeDewibh-eQnN64oQ9ljTbE_adCaaYFYewV4zuUTA</recordid><startdate>20070301</startdate><enddate>20070301</enddate><creator>Groth, Ingrid</creator><creator>Tan, Geok Yuan Annie</creator><creator>Gonzalez, Juan M</creator><creator>Laiz, Leonila</creator><creator>Carlsohn, Marc Rene</creator><creator>Schutze, Barbara</creator><creator>Wink, Joachim</creator><creator>Goodfellow, Michael</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>20070301</creationdate><title>Amycolatopsis nigrescens sp. nov., an actinomycete isolated from a Roman catacomb</title><author>Groth, Ingrid ; Tan, Geok Yuan Annie ; Gonzalez, Juan M ; Laiz, Leonila ; Carlsohn, Marc Rene ; Schutze, Barbara ; Wink, Joachim ; Goodfellow, Michael</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c423t-32b25ba501c0a1b163d663f588880a7f240a6476125eff764fd559e873b74fc13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Actinomycetales - classification</topic><topic>Actinomycetales - genetics</topic><topic>Actinomycetales - isolation & purification</topic><topic>Amycolatopsis nigrescens</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>Burial</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genotype</topic><topic>Humans</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Phenotype</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Roman World</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Groth, Ingrid</creatorcontrib><creatorcontrib>Tan, Geok Yuan Annie</creatorcontrib><creatorcontrib>Gonzalez, Juan M</creatorcontrib><creatorcontrib>Laiz, Leonila</creatorcontrib><creatorcontrib>Carlsohn, Marc Rene</creatorcontrib><creatorcontrib>Schutze, Barbara</creatorcontrib><creatorcontrib>Wink, Joachim</creatorcontrib><creatorcontrib>Goodfellow, Michael</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Groth, Ingrid</au><au>Tan, Geok Yuan Annie</au><au>Gonzalez, Juan M</au><au>Laiz, Leonila</au><au>Carlsohn, Marc Rene</au><au>Schutze, Barbara</au><au>Wink, Joachim</au><au>Goodfellow, Michael</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Amycolatopsis nigrescens sp. nov., an actinomycete isolated from a Roman catacomb</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2007-03-01</date><risdate>2007</risdate><volume>57</volume><issue>3</issue><spage>513</spage><epage>519</epage><pages>513-519</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e.V., Hans-Knöll-Institut, Beutenbergstrasse 11a, 07745 Jena, Germany
2 Institute of Biological Sciences (Microbiology), Faculty of Science, University of Malaya, 50603 Kuala Lumpur, Malaysia
3 Instituto de Recursos Naturales y Agrobiologia, CSIC, Apartado 1052, 41080 Sevilla, Spain
4 Sanofi-Aventis Deutschland GmbH, Industriepark Hoechst, 65926 Frankfurt (Main), Germany
5 Division of Biology, University of Newcastle, Newcastle upon Tyne NE1 7RU, UK
Correspondence Ingrid Groth Ingrid.Groth{at}hki-jena.de
The taxonomic status of two actinomycetes isolated from the wall of a hypogean Roman catacomb was established based on a polyphasic investigation. The organisms were found to have chemical and morphological markers typical of members of the genus Amycolatopsis . They also shared a range of chemical, molecular and phenotypic markers which served to separate them from representatives of recognized Amycolatopsis species. The new isolates formed a branch in the Amycolatopsis 16S rRNA gene sequence tree with Amycolatopsis minnesotensis NRRL B-24435 T , but this association was not supported by a particularly high bootstrap value or by the product of the maximum-parsimony tree-making algorithm. The organisms were distinguished readily from closely related Amycolatopsis species based on a combination of phenotypic properties and from all Amycolatopsis strains by their characteristic menaquinone profiles, in which tetra-hydrogenated menaquinones with 11 isoprene units predominated. The combined genotypic and phenotypic data indicate that the isolates merit recognition as representing a novel species of the genus Amycolatopsis . The name proposed for this novel species is Amycolatopsis nigrescens sp. nov., with type strain CSC17Ta-90 T (=HKI 0330 T =DSM 44992 T =NRRL B-24473 T ).
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains CSC17Ta-90 T and CSC17Ta-84 are respectively DQ486888 and DQ486887 .
A table giving the cellular fatty acid compositions of strains CSC17Ta-90 T and CSC17Ta-84 and A. minnesotensis NRRL B-24435 T is available as supplementary material in IJSEM Online.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>17329776</pmid><doi>10.1099/ijs.0.64602-0</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Actinomycetales - classification Actinomycetales - genetics Actinomycetales - isolation & purification Amycolatopsis nigrescens Bacteriology Biological and medical sciences Burial DNA, Bacterial - genetics DNA, Ribosomal - genetics Fundamental and applied biological sciences. Psychology Genotype Humans Microbiology Molecular Sequence Data Phenotype Phylogeny RNA, Ribosomal, 16S - genetics Roman World Systematics |
| title | Amycolatopsis nigrescens sp. nov., an actinomycete isolated from a Roman catacomb |
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