Sinorhizobium meliloti insertion sequence (IS) element ISRm14 is related to a previously unrecognized IS element located adjacent to the Escherichia coli locus of enterocyte effacement (LEE) pathogenicity island
ISRm14 is 2695 basepairs (bp) in size and bordered by 22 bp imperfect inverted repeats (IRs). A 9-bp target sequence is duplicated upon ISRm14 transposition. The DNA strand that putatively encodes the transposase enzyme carries three open reading frames (ORFs) designated ORFs1 to 3, which specify pu...
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| Veröffentlicht in: | Current microbiology 1999-11, Vol.39 (5), p.274-281 |
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| creator | Schneiker, S Kosier, B Puhler, A Selbitschka, W |
| description | ISRm14 is 2695 basepairs (bp) in size and bordered by 22 bp imperfect inverted repeats (IRs). A 9-bp target sequence is duplicated upon ISRm14 transposition. The DNA strand that putatively encodes the transposase enzyme carries three open reading frames (ORFs) designated ORFs1 to 3, which specify putative proteins of 15.9 kDa, 13.1 kDa, and 61.1 kDa, respectively. According to its structural characteristics, ISRm14 belongs to the recently proposed IS66 family of IS elements. The ORFs1 to 3 encoded putative proteins displayed significant similarities to ORFs of the previously unrecognized IS element ISEc8, which is inserted adjacent to the locus of enterocyte effacement (LEE) pathogenicity island of Escherichia coli EDL933. Analyses of the distribution of ISRm14 in a natural S. meliloti population showed its widespread occurrence in 66% of the strains tested with a copy number ranging from 1 to 6. |
| doi_str_mv | 10.1007/s002849900459 |
| format | Article |
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A 9-bp target sequence is duplicated upon ISRm14 transposition. The DNA strand that putatively encodes the transposase enzyme carries three open reading frames (ORFs) designated ORFs1 to 3, which specify putative proteins of 15.9 kDa, 13.1 kDa, and 61.1 kDa, respectively. According to its structural characteristics, ISRm14 belongs to the recently proposed IS66 family of IS elements. The ORFs1 to 3 encoded putative proteins displayed significant similarities to ORFs of the previously unrecognized IS element ISEc8, which is inserted adjacent to the locus of enterocyte effacement (LEE) pathogenicity island of Escherichia coli EDL933. Analyses of the distribution of ISRm14 in a natural S. meliloti population showed its widespread occurrence in 66% of the strains tested with a copy number ranging from 1 to 6.</description><identifier>ISSN: 0343-8651</identifier><identifier>EISSN: 1432-0991</identifier><identifier>DOI: 10.1007/s002849900459</identifier><identifier>PMID: 10489437</identifier><identifier>CODEN: CUMIDD</identifier><language>eng</language><publisher>New York, NY: Springer</publisher><subject>Amino Acid Sequence ; Bacteriology ; Base Sequence ; Biological and medical sciences ; Deoxyribonucleic acid ; DNA ; DNA Transposable Elements ; E coli ; Escherichia coli - genetics ; Escherichia coli - growth & development ; Escherichia coli - pathogenicity ; Escherichia coli - physiology ; Fundamental and applied biological sciences. Psychology ; genbank/af134706 ; Genes ; Genetics ; Microbiology ; Molecular Sequence Data ; Pathogens ; Plasmids - genetics ; Sequence Alignment ; Sequence Analysis, DNA ; Sinorhizobium meliloti - chemistry ; Sinorhizobium meliloti - genetics ; Sinorhizobium meliloti - growth & development ; transposition ; transposons ; Virulence - genetics</subject><ispartof>Current microbiology, 1999-11, Vol.39 (5), p.274-281</ispartof><rights>1999 INIST-CNRS</rights><rights>Springer-Verlag New York Inc. 1999</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=1972587$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10489437$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Schneiker, S</creatorcontrib><creatorcontrib>Kosier, B</creatorcontrib><creatorcontrib>Puhler, A</creatorcontrib><creatorcontrib>Selbitschka, W</creatorcontrib><title>Sinorhizobium meliloti insertion sequence (IS) element ISRm14 is related to a previously unrecognized IS element located adjacent to the Escherichia coli locus of enterocyte effacement (LEE) pathogenicity island</title><title>Current microbiology</title><addtitle>Curr Microbiol</addtitle><description>ISRm14 is 2695 basepairs (bp) in size and bordered by 22 bp imperfect inverted repeats (IRs). A 9-bp target sequence is duplicated upon ISRm14 transposition. The DNA strand that putatively encodes the transposase enzyme carries three open reading frames (ORFs) designated ORFs1 to 3, which specify putative proteins of 15.9 kDa, 13.1 kDa, and 61.1 kDa, respectively. According to its structural characteristics, ISRm14 belongs to the recently proposed IS66 family of IS elements. The ORFs1 to 3 encoded putative proteins displayed significant similarities to ORFs of the previously unrecognized IS element ISEc8, which is inserted adjacent to the locus of enterocyte effacement (LEE) pathogenicity island of Escherichia coli EDL933. Analyses of the distribution of ISRm14 in a natural S. meliloti population showed its widespread occurrence in 66% of the strains tested with a copy number ranging from 1 to 6.</description><subject>Amino Acid Sequence</subject><subject>Bacteriology</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA Transposable Elements</subject><subject>E coli</subject><subject>Escherichia coli - genetics</subject><subject>Escherichia coli - growth & development</subject><subject>Escherichia coli - pathogenicity</subject><subject>Escherichia coli - physiology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>genbank/af134706</subject><subject>Genes</subject><subject>Genetics</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Pathogens</subject><subject>Plasmids - genetics</subject><subject>Sequence Alignment</subject><subject>Sequence Analysis, DNA</subject><subject>Sinorhizobium meliloti - chemistry</subject><subject>Sinorhizobium meliloti - genetics</subject><subject>Sinorhizobium meliloti - growth & development</subject><subject>transposition</subject><subject>transposons</subject><subject>Virulence - genetics</subject><issn>0343-8651</issn><issn>1432-0991</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1999</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqF0c-LEzEUB_AgilurR68aWJHdQzU_J5OjLFULBcG65yGTedOmzCQ1yQjdf9N_yHS3KnjxFEg-7_Hyvgi9pOQdJUS9T4SwWmhNiJD6EZpRwdmCaE0foxnhgi_qStIL9CylPSGUaUKfogtKRK0FVzP0c-N8iDt3F1o3jXiEwQ0hO-x8gphd8DjB9wm8BXy12lxjGGAEn_Fq83WkAruEIwwmQ4dzwAYfIvxwYUrDEU8-gg1b7-7K42rzp3II9t6bbm_s6aIU5h3gZbI7iM7unME2DO4Ep4RDjwuCGOwxA4a-L0X3fa7Wy-U1Ppi8C1vwzrp8LOMMxnfP0ZPeDAlenM85uv24_HbzebH-8ml182G96DnVeQGVMm1bSQ2WKFMZAVXdEUqlkIYaUYlaMiJbCqTTVKmam5ZIRlVXE9VLJvkcvX3oe4ih7CjlZnTJwlBmgLKDRpVMuGL1fyGta0VKTAVe_gP3YYq-fKKhgikuhCiRztGrs5raEbrmEN1o4rH5nWoBb87AJGuGPhpvXfrrtGKyPrHXD6w3oTHbWMjthhHKCdNSUc35L39Uu4M</recordid><startdate>19991101</startdate><enddate>19991101</enddate><creator>Schneiker, S</creator><creator>Kosier, B</creator><creator>Puhler, A</creator><creator>Selbitschka, W</creator><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>19991101</creationdate><title>Sinorhizobium meliloti insertion sequence (IS) element ISRm14 is related to a previously unrecognized IS element located adjacent to the Escherichia coli locus of enterocyte effacement (LEE) pathogenicity island</title><author>Schneiker, S ; Kosier, B ; Puhler, A ; Selbitschka, W</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-f319t-e67abb659ec07a6a4e68d011545a1a46485205b1e0d917783ab05217d807f5253</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1999</creationdate><topic>Amino Acid Sequence</topic><topic>Bacteriology</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA Transposable Elements</topic><topic>E coli</topic><topic>Escherichia coli - genetics</topic><topic>Escherichia coli - growth & development</topic><topic>Escherichia coli - pathogenicity</topic><topic>Escherichia coli - physiology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>genbank/af134706</topic><topic>Genes</topic><topic>Genetics</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Pathogens</topic><topic>Plasmids - genetics</topic><topic>Sequence Alignment</topic><topic>Sequence Analysis, DNA</topic><topic>Sinorhizobium meliloti - chemistry</topic><topic>Sinorhizobium meliloti - genetics</topic><topic>Sinorhizobium meliloti - growth & development</topic><topic>transposition</topic><topic>transposons</topic><topic>Virulence - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Schneiker, S</creatorcontrib><creatorcontrib>Kosier, B</creatorcontrib><creatorcontrib>Puhler, A</creatorcontrib><creatorcontrib>Selbitschka, W</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Current microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Schneiker, S</au><au>Kosier, B</au><au>Puhler, A</au><au>Selbitschka, W</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Sinorhizobium meliloti insertion sequence (IS) element ISRm14 is related to a previously unrecognized IS element located adjacent to the Escherichia coli locus of enterocyte effacement (LEE) pathogenicity island</atitle><jtitle>Current microbiology</jtitle><addtitle>Curr Microbiol</addtitle><date>1999-11-01</date><risdate>1999</risdate><volume>39</volume><issue>5</issue><spage>274</spage><epage>281</epage><pages>274-281</pages><issn>0343-8651</issn><eissn>1432-0991</eissn><coden>CUMIDD</coden><abstract>ISRm14 is 2695 basepairs (bp) in size and bordered by 22 bp imperfect inverted repeats (IRs). A 9-bp target sequence is duplicated upon ISRm14 transposition. The DNA strand that putatively encodes the transposase enzyme carries three open reading frames (ORFs) designated ORFs1 to 3, which specify putative proteins of 15.9 kDa, 13.1 kDa, and 61.1 kDa, respectively. According to its structural characteristics, ISRm14 belongs to the recently proposed IS66 family of IS elements. The ORFs1 to 3 encoded putative proteins displayed significant similarities to ORFs of the previously unrecognized IS element ISEc8, which is inserted adjacent to the locus of enterocyte effacement (LEE) pathogenicity island of Escherichia coli EDL933. Analyses of the distribution of ISRm14 in a natural S. meliloti population showed its widespread occurrence in 66% of the strains tested with a copy number ranging from 1 to 6.</abstract><cop>New York, NY</cop><pub>Springer</pub><pmid>10489437</pmid><doi>10.1007/s002849900459</doi><tpages>8</tpages></addata></record> |
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| source | MEDLINE; SpringerNature Journals |
| subjects | Amino Acid Sequence Bacteriology Base Sequence Biological and medical sciences Deoxyribonucleic acid DNA DNA Transposable Elements E coli Escherichia coli - genetics Escherichia coli - growth & development Escherichia coli - pathogenicity Escherichia coli - physiology Fundamental and applied biological sciences. Psychology genbank/af134706 Genes Genetics Microbiology Molecular Sequence Data Pathogens Plasmids - genetics Sequence Alignment Sequence Analysis, DNA Sinorhizobium meliloti - chemistry Sinorhizobium meliloti - genetics Sinorhizobium meliloti - growth & development transposition transposons Virulence - genetics |
| title | Sinorhizobium meliloti insertion sequence (IS) element ISRm14 is related to a previously unrecognized IS element located adjacent to the Escherichia coli locus of enterocyte effacement (LEE) pathogenicity island |
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