Genome type analysis of Brazilian adenovirus strains of serotypes 1, 2, 3, 5, and 7 collected between 1976 and 1995
A collection of 92 epidemiologically unrelated isolates of Ad1 (n = 14), Ad2 (n = 29), Ad3 (n = 19), Ad5 (n = 16), and Ad7 (n = 14) collected in the cities of Belem do Pará (1°S 48°W) and Rio de Janeiro (23°S 43°W) between 1976 and 1995 from patients with respiratory disease and conjunctivitis were...
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description | A collection of 92 epidemiologically unrelated isolates of Ad1 (n = 14), Ad2 (n = 29), Ad3 (n = 19), Ad5 (n = 16), and Ad7 (n = 14) collected in the cities of Belem do Pará (1°S 48°W) and Rio de Janeiro (23°S 43°W) between 1976 and 1995 from patients with respiratory disease and conjunctivitis were characterized by restriction enzyme analysis of genomic DNA. Among the strains of subgenus B, two different genome types of serotype 7, 7b and 7e, were identified. The analysis of their temporal distribution throughout the study period suggested an alternating appearance of these two DNA variants. Only one genome type of Ad3, 3p, was detected during the sampling period. Further analysis with Xba I, Bcl I, and Hpa I indicated that it is a p1‐like genome type. Both previously described and new genomic variants were identified among subgenus C strains. Genome types D1, D7, D10, and one not previously described were identified among the 14 Ad1 strains analyzed. Genome types D2, D5, D25, and 13 new DNA variants were identified among the 29 Ad2 isolates. Genome type D38 and 5 new variants were found among the 16 strains of Ad5. In spite of the relatively small size of the sample analyzed, the results of this study confirm the important genetic variability previously observed for members of subgenus C by other authors. J. Med Virol. 58:408–412, 1999. © 1999 Wiley‐Liss, Inc. |
doi_str_mv | 10.1002/(SICI)1096-9071(199908)58:4<408::AID-JMV14>3.0.CO;2-X |
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Among the strains of subgenus B, two different genome types of serotype 7, 7b and 7e, were identified. The analysis of their temporal distribution throughout the study period suggested an alternating appearance of these two DNA variants. Only one genome type of Ad3, 3p, was detected during the sampling period. Further analysis with Xba I, Bcl I, and Hpa I indicated that it is a p1‐like genome type. Both previously described and new genomic variants were identified among subgenus C strains. Genome types D1, D7, D10, and one not previously described were identified among the 14 Ad1 strains analyzed. Genome types D2, D5, D25, and 13 new DNA variants were identified among the 29 Ad2 isolates. Genome type D38 and 5 new variants were found among the 16 strains of Ad5. In spite of the relatively small size of the sample analyzed, the results of this study confirm the important genetic variability previously observed for members of subgenus C by other authors. J. Med Virol. 58:408–412, 1999. © 1999 Wiley‐Liss, Inc.</description><identifier>ISSN: 0146-6615</identifier><identifier>EISSN: 1096-9071</identifier><identifier>DOI: 10.1002/(SICI)1096-9071(199908)58:4<408::AID-JMV14>3.0.CO;2-X</identifier><identifier>PMID: 10421409</identifier><identifier>CODEN: JMVIDB</identifier><language>eng</language><publisher>New York: John Wiley & Sons, Inc</publisher><subject>Adenoviridae - classification ; Adenoviridae - genetics ; Adenovirus ; Adult ; Biological and medical sciences ; Brazil ; Child ; Child, Preschool ; DNA Restriction Enzymes - metabolism ; DNA, Viral - genetics ; DNA, Viral - metabolism ; Epidemiology ; Female ; Fundamental and applied biological sciences. 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Med. Virol</addtitle><description>A collection of 92 epidemiologically unrelated isolates of Ad1 (n = 14), Ad2 (n = 29), Ad3 (n = 19), Ad5 (n = 16), and Ad7 (n = 14) collected in the cities of Belem do Pará (1°S 48°W) and Rio de Janeiro (23°S 43°W) between 1976 and 1995 from patients with respiratory disease and conjunctivitis were characterized by restriction enzyme analysis of genomic DNA. Among the strains of subgenus B, two different genome types of serotype 7, 7b and 7e, were identified. The analysis of their temporal distribution throughout the study period suggested an alternating appearance of these two DNA variants. Only one genome type of Ad3, 3p, was detected during the sampling period. Further analysis with Xba I, Bcl I, and Hpa I indicated that it is a p1‐like genome type. Both previously described and new genomic variants were identified among subgenus C strains. Genome types D1, D7, D10, and one not previously described were identified among the 14 Ad1 strains analyzed. Genome types D2, D5, D25, and 13 new DNA variants were identified among the 29 Ad2 isolates. Genome type D38 and 5 new variants were found among the 16 strains of Ad5. In spite of the relatively small size of the sample analyzed, the results of this study confirm the important genetic variability previously observed for members of subgenus C by other authors. J. Med Virol. 58:408–412, 1999. © 1999 Wiley‐Liss, Inc.</description><subject>Adenoviridae - classification</subject><subject>Adenoviridae - genetics</subject><subject>Adenovirus</subject><subject>Adult</subject><subject>Biological and medical sciences</subject><subject>Brazil</subject><subject>Child</subject><subject>Child, Preschool</subject><subject>DNA Restriction Enzymes - metabolism</subject><subject>DNA, Viral - genetics</subject><subject>DNA, Viral - metabolism</subject><subject>Epidemiology</subject><subject>Female</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genome, Viral</subject><subject>Human viral diseases</subject><subject>Humans</subject><subject>Infant</subject><subject>Infectious diseases</subject><subject>Male</subject><subject>Medical sciences</subject><subject>Microbiology</subject><subject>molecular epidemiology</subject><subject>respiratory infections</subject><subject>restriction enzyme analysis</subject><subject>Serotyping</subject><subject>Viral diseases</subject><subject>Viral diseases of the respiratory system and ent viral diseases</subject><subject>Virology</subject><issn>0146-6615</issn><issn>1096-9071</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1999</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkV1v0zAUhiMEYmXwF5AvENqkpthO4o_yIY0CXcdYLzbGxM2R65xIGWlS7JRRfj1OUw0kkHZl2efxq_foiaLXjI4YpfzFwflsMjtkVItYU8kOmNaaqsNMjdNXKVXj8dHsXXzy6ZKlb5IRHU3mL3l8dS8a3P64Hw0oS0UsBMv2okfeX1NKleb8YbTHaMpZSvUg8lOsmyWSdrNCYmpTbXzpSVOQt878KqvS1MTkAflRurUnvnWmrLdzj67pPnnChoQPSTIk2TAk5EQS21QV2hZzssD2BrEmTEuxHYY1ssfRg8JUHp_szv3o84f3F5Pj-HQ-nU2OTmObCp7GBaVMG55xQfMCNYoCVa5Z2MBwLaySKKxRTOZoUaXU0oRrtRCYiVwsTLjuR8_73JVrvq_Rt7AsvcWqMjU2aw9Ca6Yymt4JMsklT1QH7ppa13jvsICVK5fGbYBR6LQBdNqgkwCdBOi1QaYghaANIGiDrTZIgMJkDhyuQu7TXYH1Yon5X6m9pwA82wHGW1MVztS29H84JaVKWMAue-ymrHDzT7k7uv2vWv8QguM-uPQt_rwNNu4bCJnIDL6cTeHr-dnxhfh4AjL5DXMRy9k</recordid><startdate>199908</startdate><enddate>199908</enddate><creator>Kajon, Adriana E.</creator><creator>Portes, Silvana A.R.</creator><creator>de Mello, Wyller A.</creator><creator>Nascimento, Jussara P.</creator><creator>Siqueira, Marilda M.</creator><general>John Wiley & Sons, Inc</general><general>Wiley-Liss</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7U9</scope><scope>H94</scope><scope>7X8</scope></search><sort><creationdate>199908</creationdate><title>Genome type analysis of Brazilian adenovirus strains of serotypes 1, 2, 3, 5, and 7 collected between 1976 and 1995</title><author>Kajon, Adriana E. ; Portes, Silvana A.R. ; de Mello, Wyller A. ; Nascimento, Jussara P. ; Siqueira, Marilda M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4624-f0019a25260dfe9e6fe8d91922a296c87e6ca817dece840c03298b6e56d6bac03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1999</creationdate><topic>Adenoviridae - classification</topic><topic>Adenoviridae - genetics</topic><topic>Adenovirus</topic><topic>Adult</topic><topic>Biological and medical sciences</topic><topic>Brazil</topic><topic>Child</topic><topic>Child, Preschool</topic><topic>DNA Restriction Enzymes - metabolism</topic><topic>DNA, Viral - genetics</topic><topic>DNA, Viral - metabolism</topic><topic>Epidemiology</topic><topic>Female</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genome, Viral</topic><topic>Human viral diseases</topic><topic>Humans</topic><topic>Infant</topic><topic>Infectious diseases</topic><topic>Male</topic><topic>Medical sciences</topic><topic>Microbiology</topic><topic>molecular epidemiology</topic><topic>respiratory infections</topic><topic>restriction enzyme analysis</topic><topic>Serotyping</topic><topic>Viral diseases</topic><topic>Viral diseases of the respiratory system and ent viral diseases</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kajon, Adriana E.</creatorcontrib><creatorcontrib>Portes, Silvana A.R.</creatorcontrib><creatorcontrib>de Mello, Wyller A.</creatorcontrib><creatorcontrib>Nascimento, Jussara P.</creatorcontrib><creatorcontrib>Siqueira, Marilda M.</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Virology and AIDS Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of medical virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kajon, Adriana E.</au><au>Portes, Silvana A.R.</au><au>de Mello, Wyller A.</au><au>Nascimento, Jussara P.</au><au>Siqueira, Marilda M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome type analysis of Brazilian adenovirus strains of serotypes 1, 2, 3, 5, and 7 collected between 1976 and 1995</atitle><jtitle>Journal of medical virology</jtitle><addtitle>J. Med. Virol</addtitle><date>1999-08</date><risdate>1999</risdate><volume>58</volume><issue>4</issue><spage>408</spage><epage>412</epage><pages>408-412</pages><issn>0146-6615</issn><eissn>1096-9071</eissn><coden>JMVIDB</coden><abstract>A collection of 92 epidemiologically unrelated isolates of Ad1 (n = 14), Ad2 (n = 29), Ad3 (n = 19), Ad5 (n = 16), and Ad7 (n = 14) collected in the cities of Belem do Pará (1°S 48°W) and Rio de Janeiro (23°S 43°W) between 1976 and 1995 from patients with respiratory disease and conjunctivitis were characterized by restriction enzyme analysis of genomic DNA. Among the strains of subgenus B, two different genome types of serotype 7, 7b and 7e, were identified. The analysis of their temporal distribution throughout the study period suggested an alternating appearance of these two DNA variants. Only one genome type of Ad3, 3p, was detected during the sampling period. Further analysis with Xba I, Bcl I, and Hpa I indicated that it is a p1‐like genome type. Both previously described and new genomic variants were identified among subgenus C strains. Genome types D1, D7, D10, and one not previously described were identified among the 14 Ad1 strains analyzed. Genome types D2, D5, D25, and 13 new DNA variants were identified among the 29 Ad2 isolates. Genome type D38 and 5 new variants were found among the 16 strains of Ad5. In spite of the relatively small size of the sample analyzed, the results of this study confirm the important genetic variability previously observed for members of subgenus C by other authors. J. Med Virol. 58:408–412, 1999. © 1999 Wiley‐Liss, Inc.</abstract><cop>New York</cop><pub>John Wiley & Sons, Inc</pub><pmid>10421409</pmid><doi>10.1002/(SICI)1096-9071(199908)58:4<408::AID-JMV14>3.0.CO;2-X</doi><tpages>5</tpages></addata></record> |
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subjects | Adenoviridae - classification Adenoviridae - genetics Adenovirus Adult Biological and medical sciences Brazil Child Child, Preschool DNA Restriction Enzymes - metabolism DNA, Viral - genetics DNA, Viral - metabolism Epidemiology Female Fundamental and applied biological sciences. Psychology Genome, Viral Human viral diseases Humans Infant Infectious diseases Male Medical sciences Microbiology molecular epidemiology respiratory infections restriction enzyme analysis Serotyping Viral diseases Viral diseases of the respiratory system and ent viral diseases Virology |
title | Genome type analysis of Brazilian adenovirus strains of serotypes 1, 2, 3, 5, and 7 collected between 1976 and 1995 |
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