Diffusion of anionic and neutral GFP derivatives through plasmodesmata in epidermal cells of Nicotiana benthamiana
Plasmodesmata (Pd) are trans-wall membrane channels that permit cell-to-cell transport of metabolites and other small molecules, proteins, RNAs, and signaling molecules. The transport of cytoplasmic soluble macromolecules is a function of the electrochemical gradient between adjacent cells, the numb...
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description | Plasmodesmata (Pd) are trans-wall membrane channels that permit cell-to-cell transport of metabolites and other small molecules, proteins, RNAs, and signaling molecules. The transport of cytoplasmic soluble macromolecules is a function of the electrochemical gradient between adjacent cells, the number of Pd per interface between adjacent cells, Stokes radius (RS), area of the cytoplasmic annulus, and channel length. The size of the largest molecule that can pass through Pd defines the Pd size exclusion limit. However, since the shape and size of a molecule determines its capacity to diffuse through pores or tubes, RS is a better measure. Relatively small changes in RS can cause large differences in the mobility of molecular probes, particularly if the pore size is close to that of the probe. In addition, as the dimensions of a macromolecule approach that of the channel, membrane charge effects may become important. We employed quantitative tools and molecular modeling to measure the apparent coefficient of conductivity of Pd, C(Pd), for the non-targeted transport of macromolecules. This method allowed us to examine the influence of protein charge and RS on C(Pd) in Nicotiana benthamiana. The C(Pd) of modified green fluorescent proteins (GFPs) of different sizes but with the same charge as native GFP and of a more negatively charged derivative were determined. We found that the C(Pd) of cytoplasmic soluble GFP and cytoplasmic forms of modified GFP were the most strongly correlated with RS and that the apparent aberrant increase in C(Pd) of a negatively charged GFP derivative was, at least in part, the result of the charge effect on RS. |
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The transport of cytoplasmic soluble macromolecules is a function of the electrochemical gradient between adjacent cells, the number of Pd per interface between adjacent cells, Stokes radius (RS), area of the cytoplasmic annulus, and channel length. The size of the largest molecule that can pass through Pd defines the Pd size exclusion limit. However, since the shape and size of a molecule determines its capacity to diffuse through pores or tubes, RS is a better measure. Relatively small changes in RS can cause large differences in the mobility of molecular probes, particularly if the pore size is close to that of the probe. In addition, as the dimensions of a macromolecule approach that of the channel, membrane charge effects may become important. We employed quantitative tools and molecular modeling to measure the apparent coefficient of conductivity of Pd, C(Pd), for the non-targeted transport of macromolecules. This method allowed us to examine the influence of protein charge and RS on C(Pd) in Nicotiana benthamiana. The C(Pd) of modified green fluorescent proteins (GFPs) of different sizes but with the same charge as native GFP and of a more negatively charged derivative were determined. We found that the C(Pd) of cytoplasmic soluble GFP and cytoplasmic forms of modified GFP were the most strongly correlated with RS and that the apparent aberrant increase in C(Pd) of a negatively charged GFP derivative was, at least in part, the result of the charge effect on RS.</description><identifier>ISSN: 0033-183X</identifier><identifier>EISSN: 1615-6102</identifier><identifier>DOI: 10.1007/s00709-008-0014-7</identifier><identifier>PMID: 18797983</identifier><language>eng</language><publisher>Vienna: Vienna : Springer Vienna</publisher><subject>Anions - metabolism ; Biomedical and Life Sciences ; Cell Biology ; Cell Communication - physiology ; Cytoplasm - metabolism ; Diffusion ; Fluorescence correlation spectroscopy ; Green Fluorescent Proteins - chemistry ; Green Fluorescent Proteins - metabolism ; hindered transport ; Image Processing, Computer-Assisted ; Life Sciences ; Microscopy, Confocal ; molecular charge ; molecular modeling ; Molecular Probes - metabolism ; Natural Science ; Naturvetenskap ; Nicotiana - metabolism ; Original Article ; Plant Epidermis - metabolism ; Plant Sciences ; plasmodesmal conductivity ; Plasmodesmata - metabolism ; Protein Conformation ; Protein Transport ; Proteins ; Stokes radius ; Zoology</subject><ispartof>Protoplasma, 2008-12, Vol.234 (1-4), p.13-23</ispartof><rights>Springer-Verlag 2008</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c497t-cea14863f6cc537174bfb88919b53d6e5912d1f0a1ec84a16b0e5324801990fb3</citedby><cites>FETCH-LOGICAL-c497t-cea14863f6cc537174bfb88919b53d6e5912d1f0a1ec84a16b0e5324801990fb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00709-008-0014-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00709-008-0014-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,781,785,886,27928,27929,41492,42561,51323</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18797983$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://urn.kb.se/resolve?urn=urn:nbn:se:lnu:diva-14223$$DView record from Swedish Publication Index$$Hfree_for_read</backlink></links><search><creatorcontrib>Dashevskaya, Svetlana</creatorcontrib><creatorcontrib>Kopito, Ronen Benjamine</creatorcontrib><creatorcontrib>Friedman, Ran</creatorcontrib><creatorcontrib>Elbaum, Michael</creatorcontrib><creatorcontrib>Epel, Bernard L</creatorcontrib><title>Diffusion of anionic and neutral GFP derivatives through plasmodesmata in epidermal cells of Nicotiana benthamiana</title><title>Protoplasma</title><addtitle>Protoplasma</addtitle><addtitle>Protoplasma</addtitle><description>Plasmodesmata (Pd) are trans-wall membrane channels that permit cell-to-cell transport of metabolites and other small molecules, proteins, RNAs, and signaling molecules. 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This method allowed us to examine the influence of protein charge and RS on C(Pd) in Nicotiana benthamiana. The C(Pd) of modified green fluorescent proteins (GFPs) of different sizes but with the same charge as native GFP and of a more negatively charged derivative were determined. We found that the C(Pd) of cytoplasmic soluble GFP and cytoplasmic forms of modified GFP were the most strongly correlated with RS and that the apparent aberrant increase in C(Pd) of a negatively charged GFP derivative was, at least in part, the result of the charge effect on RS.</description><subject>Anions - metabolism</subject><subject>Biomedical and Life Sciences</subject><subject>Cell Biology</subject><subject>Cell Communication - physiology</subject><subject>Cytoplasm - metabolism</subject><subject>Diffusion</subject><subject>Fluorescence correlation spectroscopy</subject><subject>Green Fluorescent Proteins - chemistry</subject><subject>Green Fluorescent Proteins - metabolism</subject><subject>hindered transport</subject><subject>Image Processing, Computer-Assisted</subject><subject>Life Sciences</subject><subject>Microscopy, Confocal</subject><subject>molecular charge</subject><subject>molecular modeling</subject><subject>Molecular Probes - metabolism</subject><subject>Natural Science</subject><subject>Naturvetenskap</subject><subject>Nicotiana - metabolism</subject><subject>Original Article</subject><subject>Plant Epidermis - metabolism</subject><subject>Plant Sciences</subject><subject>plasmodesmal conductivity</subject><subject>Plasmodesmata - metabolism</subject><subject>Protein Conformation</subject><subject>Protein Transport</subject><subject>Proteins</subject><subject>Stokes radius</subject><subject>Zoology</subject><issn>0033-183X</issn><issn>1615-6102</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kVGL1TAQhYMo7nX1B_iiAcEnqzNJ0yaPy667CosKuuJbSNvk3ixtU5N2xX9vSi8qPviQzMB85wzDIeQpwmsEqN-k_IEqAGR-WBb1PbLDCkVRIbD7ZAfAeYGSfzshj1K6BQDBQDwkJyhrVSvJdyReeOeW5MNIg6NmzI1vc-3oaJc5mp5eXX6inY3-zsz-ziY6H2JY9gc69SYNobNpMLOhfqR28pkbsqS1fZ9Wvw--DbM3o6GNHeeDGdb-MXngTJ_sk2M9JTeXb7-cvyuuP169Pz-7LtpS1XPRWoOlrLir2lbwGuuycY2UClUjeFdZoZB16MCgbWVpsGrACs5KCagUuIafklebb_php6XRU_SDiT91MF5f-K9nOsS97sdFY8kYz_jLDZ9i-L7YNOvBp_USM9qwJF0pWQErMYMv_gFvwxLHfIpGxGzFlKgzhRvVxpBStO73fgS9pqe39HROT6_p6VXz7Oi8NIPt_iiOcWWAHU_Ko3Fv41-r_-P6fBM5E7TZR5_0zWcGyAFFVQuO_BdMrq6u</recordid><startdate>20081201</startdate><enddate>20081201</enddate><creator>Dashevskaya, Svetlana</creator><creator>Kopito, Ronen Benjamine</creator><creator>Friedman, Ran</creator><creator>Elbaum, Michael</creator><creator>Epel, Bernard L</creator><general>Vienna : Springer Vienna</general><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7RV</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>88G</scope><scope>8AO</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB0</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2M</scope><scope>M7P</scope><scope>NAPCQ</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PSYQQ</scope><scope>Q9U</scope><scope>7X8</scope><scope>ADTPV</scope><scope>AOWAS</scope><scope>D92</scope></search><sort><creationdate>20081201</creationdate><title>Diffusion of anionic and neutral GFP derivatives through plasmodesmata in epidermal cells of Nicotiana benthamiana</title><author>Dashevskaya, Svetlana ; Kopito, Ronen Benjamine ; Friedman, Ran ; Elbaum, Michael ; Epel, Bernard L</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c497t-cea14863f6cc537174bfb88919b53d6e5912d1f0a1ec84a16b0e5324801990fb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Anions - metabolism</topic><topic>Biomedical and Life Sciences</topic><topic>Cell Biology</topic><topic>Cell Communication - physiology</topic><topic>Cytoplasm - metabolism</topic><topic>Diffusion</topic><topic>Fluorescence correlation spectroscopy</topic><topic>Green Fluorescent Proteins - chemistry</topic><topic>Green Fluorescent Proteins - metabolism</topic><topic>hindered transport</topic><topic>Image Processing, Computer-Assisted</topic><topic>Life Sciences</topic><topic>Microscopy, Confocal</topic><topic>molecular charge</topic><topic>molecular modeling</topic><topic>Molecular Probes - metabolism</topic><topic>Natural Science</topic><topic>Naturvetenskap</topic><topic>Nicotiana - metabolism</topic><topic>Original Article</topic><topic>Plant Epidermis - metabolism</topic><topic>Plant Sciences</topic><topic>plasmodesmal conductivity</topic><topic>Plasmodesmata - metabolism</topic><topic>Protein Conformation</topic><topic>Protein Transport</topic><topic>Proteins</topic><topic>Stokes radius</topic><topic>Zoology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Dashevskaya, Svetlana</creatorcontrib><creatorcontrib>Kopito, Ronen Benjamine</creatorcontrib><creatorcontrib>Friedman, Ran</creatorcontrib><creatorcontrib>Elbaum, Michael</creatorcontrib><creatorcontrib>Epel, Bernard L</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nursing & Allied Health Database</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Psychology Database (Alumni)</collection><collection>ProQuest Pharma Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Psychology Database</collection><collection>Biological Science Database</collection><collection>Nursing & Allied Health Premium</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest One Psychology</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - 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The transport of cytoplasmic soluble macromolecules is a function of the electrochemical gradient between adjacent cells, the number of Pd per interface between adjacent cells, Stokes radius (RS), area of the cytoplasmic annulus, and channel length. The size of the largest molecule that can pass through Pd defines the Pd size exclusion limit. However, since the shape and size of a molecule determines its capacity to diffuse through pores or tubes, RS is a better measure. Relatively small changes in RS can cause large differences in the mobility of molecular probes, particularly if the pore size is close to that of the probe. In addition, as the dimensions of a macromolecule approach that of the channel, membrane charge effects may become important. We employed quantitative tools and molecular modeling to measure the apparent coefficient of conductivity of Pd, C(Pd), for the non-targeted transport of macromolecules. This method allowed us to examine the influence of protein charge and RS on C(Pd) in Nicotiana benthamiana. The C(Pd) of modified green fluorescent proteins (GFPs) of different sizes but with the same charge as native GFP and of a more negatively charged derivative were determined. We found that the C(Pd) of cytoplasmic soluble GFP and cytoplasmic forms of modified GFP were the most strongly correlated with RS and that the apparent aberrant increase in C(Pd) of a negatively charged GFP derivative was, at least in part, the result of the charge effect on RS.</abstract><cop>Vienna</cop><pub>Vienna : Springer Vienna</pub><pmid>18797983</pmid><doi>10.1007/s00709-008-0014-7</doi><tpages>11</tpages></addata></record> |
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subjects | Anions - metabolism Biomedical and Life Sciences Cell Biology Cell Communication - physiology Cytoplasm - metabolism Diffusion Fluorescence correlation spectroscopy Green Fluorescent Proteins - chemistry Green Fluorescent Proteins - metabolism hindered transport Image Processing, Computer-Assisted Life Sciences Microscopy, Confocal molecular charge molecular modeling Molecular Probes - metabolism Natural Science Naturvetenskap Nicotiana - metabolism Original Article Plant Epidermis - metabolism Plant Sciences plasmodesmal conductivity Plasmodesmata - metabolism Protein Conformation Protein Transport Proteins Stokes radius Zoology |
title | Diffusion of anionic and neutral GFP derivatives through plasmodesmata in epidermal cells of Nicotiana benthamiana |
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