Phylogenetic analysis of rotaviruses with genotypes G1, G2, G9 and G12 in Bangladesh: evidence for a close relationship between rotaviruses from children and adults
To clarify the phylogenetic relatedness of rotaviruses causing gastroenteritis in children and adults, an epidemiologic investigation was conducted in Mymensingh, Bangladesh, during the period between July 2004 and June 2006. A total of 2,540 stool specimens from diarrheal patients from three hospit...
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| Veröffentlicht in: | Archives of virology 2008-11, Vol.153 (11), p.1999-2012 |
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| creator | Paul, Shyamal Kumar Kobayashi, Nobumichi Nagashima, Shigeo Ishino, Masaho Watanabe, Shojiro Alam, Mohammed Mahbub Ahmed, Muzahed Uddin Hossain, Mohammad Akram Naik, Trailokya Nath |
| description | To clarify the phylogenetic relatedness of rotaviruses causing gastroenteritis in children and adults, an epidemiologic investigation was conducted in Mymensingh, Bangladesh, during the period between July 2004 and June 2006. A total of 2,540 stool specimens from diarrheal patients from three hospitals were analyzed. Overall, rotavirus-positive rates in children and adults were 26.4 and 10.1%, respectively. Among the 155 rotavirus specimens examined genetically from both children and adults, the most frequent G genotype was G2 (detection rate: 54.0 and 47.6%, respectively), followed by G1 (21.2 and 26.2%, respectively), and G9 (15.9 and 9.5%, respectively). G12 was also detected in five specimens (3.2% in total; four children and one adult). Sequence identities of VP7 genes of G2 rotaviruses from children and adults were higher than 97.8%, while these Bangladeshi G2 viruses showed generally lower identities to G2 rotaviruses reported elsewhere in the world, except for some strains reported in African countries. Similarly, extremely high sequence identities between children and adults were observed for VP7 genes of G1, G9 and G12 rotaviruses, and also for the VP4 genes of P[4], P[6], and P[8] viruses. Rotaviruses from children and adults detected in this study were included in a single cluster in phylogenetic dendrograms of VP7 or VP4 genes of individual G/P types. Rotaviruses with two emerging types, G9 and G12, had VP7 genes that were phylogenetically close to those of individual G-types recently reported in Bangladesh and India and were included in the globally spreading lineages of these G-types. These findings suggested that genetically identical rotaviruses, including those with the emerging types G9 and G12, were circulating among children and adults in city and rural areas of Bangladesh. |
| doi_str_mv | 10.1007/s00705-008-0212-9 |
| format | Article |
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A total of 2,540 stool specimens from diarrheal patients from three hospitals were analyzed. Overall, rotavirus-positive rates in children and adults were 26.4 and 10.1%, respectively. Among the 155 rotavirus specimens examined genetically from both children and adults, the most frequent G genotype was G2 (detection rate: 54.0 and 47.6%, respectively), followed by G1 (21.2 and 26.2%, respectively), and G9 (15.9 and 9.5%, respectively). G12 was also detected in five specimens (3.2% in total; four children and one adult). Sequence identities of VP7 genes of G2 rotaviruses from children and adults were higher than 97.8%, while these Bangladeshi G2 viruses showed generally lower identities to G2 rotaviruses reported elsewhere in the world, except for some strains reported in African countries. Similarly, extremely high sequence identities between children and adults were observed for VP7 genes of G1, G9 and G12 rotaviruses, and also for the VP4 genes of P[4], P[6], and P[8] viruses. Rotaviruses from children and adults detected in this study were included in a single cluster in phylogenetic dendrograms of VP7 or VP4 genes of individual G/P types. Rotaviruses with two emerging types, G9 and G12, had VP7 genes that were phylogenetically close to those of individual G-types recently reported in Bangladesh and India and were included in the globally spreading lineages of these G-types. These findings suggested that genetically identical rotaviruses, including those with the emerging types G9 and G12, were circulating among children and adults in city and rural areas of Bangladesh.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-008-0212-9</identifier><identifier>PMID: 18839059</identifier><language>eng</language><publisher>Vienna: Vienna : Springer Vienna</publisher><subject>Adolescent ; Adult ; Bangladesh - epidemiology ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; Cell Line ; Child ; Child, Preschool ; Diarrhea ; Epidemics ; Feces ; Feces - virology ; Female ; Fundamental and applied biological sciences. Psychology ; Gastroenteritis ; Gastroenteritis - epidemiology ; Gastroenteritis - virology ; Genotype ; Genotype & phenotype ; Hospitals ; Humans ; Infant ; Infectious Diseases ; Male ; Medical Microbiology ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Original Article ; Phylogenetics ; Phylogeny ; Proteins ; Rotavirus ; Rotavirus - classification ; Rotavirus - genetics ; Rotavirus - isolation & purification ; Rotavirus Infections - epidemiology ; Rotavirus Infections - virology ; Vaccines ; Viral Proteins - genetics ; Virology ; Viruses ; Young Adult</subject><ispartof>Archives of virology, 2008-11, Vol.153 (11), p.1999-2012</ispartof><rights>Springer-Verlag 2008</rights><rights>2009 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c454t-b6815191991bc12a1993e60fa690540dc3e6ba036bfc3217e8971dc8bc0a57753</citedby><cites>FETCH-LOGICAL-c454t-b6815191991bc12a1993e60fa690540dc3e6ba036bfc3217e8971dc8bc0a57753</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-008-0212-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-008-0212-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21119528$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18839059$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Paul, Shyamal Kumar</creatorcontrib><creatorcontrib>Kobayashi, Nobumichi</creatorcontrib><creatorcontrib>Nagashima, Shigeo</creatorcontrib><creatorcontrib>Ishino, Masaho</creatorcontrib><creatorcontrib>Watanabe, Shojiro</creatorcontrib><creatorcontrib>Alam, Mohammed Mahbub</creatorcontrib><creatorcontrib>Ahmed, Muzahed Uddin</creatorcontrib><creatorcontrib>Hossain, Mohammad Akram</creatorcontrib><creatorcontrib>Naik, Trailokya Nath</creatorcontrib><title>Phylogenetic analysis of rotaviruses with genotypes G1, G2, G9 and G12 in Bangladesh: evidence for a close relationship between rotaviruses from children and adults</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>To clarify the phylogenetic relatedness of rotaviruses causing gastroenteritis in children and adults, an epidemiologic investigation was conducted in Mymensingh, Bangladesh, during the period between July 2004 and June 2006. A total of 2,540 stool specimens from diarrheal patients from three hospitals were analyzed. Overall, rotavirus-positive rates in children and adults were 26.4 and 10.1%, respectively. Among the 155 rotavirus specimens examined genetically from both children and adults, the most frequent G genotype was G2 (detection rate: 54.0 and 47.6%, respectively), followed by G1 (21.2 and 26.2%, respectively), and G9 (15.9 and 9.5%, respectively). G12 was also detected in five specimens (3.2% in total; four children and one adult). Sequence identities of VP7 genes of G2 rotaviruses from children and adults were higher than 97.8%, while these Bangladeshi G2 viruses showed generally lower identities to G2 rotaviruses reported elsewhere in the world, except for some strains reported in African countries. Similarly, extremely high sequence identities between children and adults were observed for VP7 genes of G1, G9 and G12 rotaviruses, and also for the VP4 genes of P[4], P[6], and P[8] viruses. Rotaviruses from children and adults detected in this study were included in a single cluster in phylogenetic dendrograms of VP7 or VP4 genes of individual G/P types. Rotaviruses with two emerging types, G9 and G12, had VP7 genes that were phylogenetically close to those of individual G-types recently reported in Bangladesh and India and were included in the globally spreading lineages of these G-types. These findings suggested that genetically identical rotaviruses, including those with the emerging types G9 and G12, were circulating among children and adults in city and rural areas of Bangladesh.</description><subject>Adolescent</subject><subject>Adult</subject><subject>Bangladesh - epidemiology</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Cell Line</subject><subject>Child</subject><subject>Child, Preschool</subject><subject>Diarrhea</subject><subject>Epidemics</subject><subject>Feces</subject><subject>Feces - virology</subject><subject>Female</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gastroenteritis</subject><subject>Gastroenteritis - epidemiology</subject><subject>Gastroenteritis - virology</subject><subject>Genotype</subject><subject>Genotype & phenotype</subject><subject>Hospitals</subject><subject>Humans</subject><subject>Infant</subject><subject>Infectious Diseases</subject><subject>Male</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Original Article</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Proteins</subject><subject>Rotavirus</subject><subject>Rotavirus - classification</subject><subject>Rotavirus - genetics</subject><subject>Rotavirus - isolation & purification</subject><subject>Rotavirus Infections - epidemiology</subject><subject>Rotavirus Infections - virology</subject><subject>Vaccines</subject><subject>Viral Proteins - genetics</subject><subject>Virology</subject><subject>Viruses</subject><subject>Young Adult</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkc9u1DAQxiMEokvhAbiAhQQnAjN2nNjcoCoLUiWQoGfLcZyNK2-82EmrfR8etF6yooIDHPxn7N98M_ZXFE8R3iBA8zblCXgJIEqgSEt5r1hhxWgpGinuFytgUJWiBnFSPErpCiAfMP6wOEEhmAQuV8XPr8Peh40d7eQM0aP2--QSCT2JYdLXLs7JJnLjpoFkKEz7XQ7X-JqsaR4yZ3Q5pMSN5IMeN153Ng3viL12nR2NJX2IRBPjQ7IkWq8nF8Y0uB1p7XRj7fhHmT6GLTGD813MNwdp3c1-So-LB732yT45rqfF5cfz72efyosv689n7y9KU_FqKttaIEeJUmJrkOq8YbaGXtf5rRV0JketBla3vWEUGytkg50RrQHNm4az0-LVoruL4cds06S2LhnrvR5tmJOqZSOwrpr_gih5zajEDL74C7wKc8y_nFQ2jDXQ_FLDBTIxpBRtr3bRbXXcKwR1MFotRqtstDoYrWTOeXYUntut7e4yjs5m4OUR0Mlo30c9Gpd-cxQxN0lF5ujCpXw1bmy86_Bf1Z8vSb0OSm9iFr78RgEZIOeSM85uAcrWyVI</recordid><startdate>20081101</startdate><enddate>20081101</enddate><creator>Paul, Shyamal Kumar</creator><creator>Kobayashi, Nobumichi</creator><creator>Nagashima, Shigeo</creator><creator>Ishino, Masaho</creator><creator>Watanabe, Shojiro</creator><creator>Alam, Mohammed Mahbub</creator><creator>Ahmed, Muzahed Uddin</creator><creator>Hossain, Mohammad Akram</creator><creator>Naik, Trailokya Nath</creator><general>Vienna : Springer Vienna</general><general>Springer Vienna</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20081101</creationdate><title>Phylogenetic analysis of rotaviruses with genotypes G1, G2, G9 and G12 in Bangladesh: evidence for a close relationship between rotaviruses from children and adults</title><author>Paul, Shyamal Kumar ; Kobayashi, Nobumichi ; Nagashima, Shigeo ; Ishino, Masaho ; Watanabe, Shojiro ; Alam, Mohammed Mahbub ; Ahmed, Muzahed Uddin ; Hossain, Mohammad Akram ; Naik, Trailokya Nath</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c454t-b6815191991bc12a1993e60fa690540dc3e6ba036bfc3217e8971dc8bc0a57753</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Adolescent</topic><topic>Adult</topic><topic>Bangladesh - epidemiology</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Cell Line</topic><topic>Child</topic><topic>Child, Preschool</topic><topic>Diarrhea</topic><topic>Epidemics</topic><topic>Feces</topic><topic>Feces - virology</topic><topic>Female</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gastroenteritis</topic><topic>Gastroenteritis - epidemiology</topic><topic>Gastroenteritis - virology</topic><topic>Genotype</topic><topic>Genotype & phenotype</topic><topic>Hospitals</topic><topic>Humans</topic><topic>Infant</topic><topic>Infectious Diseases</topic><topic>Male</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Original Article</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Proteins</topic><topic>Rotavirus</topic><topic>Rotavirus - classification</topic><topic>Rotavirus - genetics</topic><topic>Rotavirus - isolation & purification</topic><topic>Rotavirus Infections - epidemiology</topic><topic>Rotavirus Infections - virology</topic><topic>Vaccines</topic><topic>Viral Proteins - genetics</topic><topic>Virology</topic><topic>Viruses</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Paul, Shyamal Kumar</creatorcontrib><creatorcontrib>Kobayashi, Nobumichi</creatorcontrib><creatorcontrib>Nagashima, Shigeo</creatorcontrib><creatorcontrib>Ishino, Masaho</creatorcontrib><creatorcontrib>Watanabe, Shojiro</creatorcontrib><creatorcontrib>Alam, Mohammed Mahbub</creatorcontrib><creatorcontrib>Ahmed, Muzahed Uddin</creatorcontrib><creatorcontrib>Hossain, Mohammad Akram</creatorcontrib><creatorcontrib>Naik, Trailokya Nath</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Paul, Shyamal Kumar</au><au>Kobayashi, Nobumichi</au><au>Nagashima, Shigeo</au><au>Ishino, Masaho</au><au>Watanabe, Shojiro</au><au>Alam, Mohammed Mahbub</au><au>Ahmed, Muzahed Uddin</au><au>Hossain, Mohammad Akram</au><au>Naik, Trailokya Nath</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetic analysis of rotaviruses with genotypes G1, G2, G9 and G12 in Bangladesh: evidence for a close relationship between rotaviruses from children and adults</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2008-11-01</date><risdate>2008</risdate><volume>153</volume><issue>11</issue><spage>1999</spage><epage>2012</epage><pages>1999-2012</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>To clarify the phylogenetic relatedness of rotaviruses causing gastroenteritis in children and adults, an epidemiologic investigation was conducted in Mymensingh, Bangladesh, during the period between July 2004 and June 2006. A total of 2,540 stool specimens from diarrheal patients from three hospitals were analyzed. Overall, rotavirus-positive rates in children and adults were 26.4 and 10.1%, respectively. Among the 155 rotavirus specimens examined genetically from both children and adults, the most frequent G genotype was G2 (detection rate: 54.0 and 47.6%, respectively), followed by G1 (21.2 and 26.2%, respectively), and G9 (15.9 and 9.5%, respectively). G12 was also detected in five specimens (3.2% in total; four children and one adult). Sequence identities of VP7 genes of G2 rotaviruses from children and adults were higher than 97.8%, while these Bangladeshi G2 viruses showed generally lower identities to G2 rotaviruses reported elsewhere in the world, except for some strains reported in African countries. Similarly, extremely high sequence identities between children and adults were observed for VP7 genes of G1, G9 and G12 rotaviruses, and also for the VP4 genes of P[4], P[6], and P[8] viruses. Rotaviruses from children and adults detected in this study were included in a single cluster in phylogenetic dendrograms of VP7 or VP4 genes of individual G/P types. Rotaviruses with two emerging types, G9 and G12, had VP7 genes that were phylogenetically close to those of individual G-types recently reported in Bangladesh and India and were included in the globally spreading lineages of these G-types. These findings suggested that genetically identical rotaviruses, including those with the emerging types G9 and G12, were circulating among children and adults in city and rural areas of Bangladesh.</abstract><cop>Vienna</cop><pub>Vienna : Springer Vienna</pub><pmid>18839059</pmid><doi>10.1007/s00705-008-0212-9</doi><tpages>14</tpages></addata></record> |
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| subjects | Adolescent Adult Bangladesh - epidemiology Biological and medical sciences Biomedical and Life Sciences Biomedicine Cell Line Child Child, Preschool Diarrhea Epidemics Feces Feces - virology Female Fundamental and applied biological sciences. Psychology Gastroenteritis Gastroenteritis - epidemiology Gastroenteritis - virology Genotype Genotype & phenotype Hospitals Humans Infant Infectious Diseases Male Medical Microbiology Microbiology Miscellaneous Molecular Sequence Data Original Article Phylogenetics Phylogeny Proteins Rotavirus Rotavirus - classification Rotavirus - genetics Rotavirus - isolation & purification Rotavirus Infections - epidemiology Rotavirus Infections - virology Vaccines Viral Proteins - genetics Virology Viruses Young Adult |
| title | Phylogenetic analysis of rotaviruses with genotypes G1, G2, G9 and G12 in Bangladesh: evidence for a close relationship between rotaviruses from children and adults |
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