On the spherical prototype of a complex dissipative late-stage formation seen in terms of least action Vojta–Natanson principle
The spherical prototype of a crystalline and/or disorderly formation may help in understanding the final stages of many complex biomolecular arrangements. These stages are important for both naturally organized simple biosystems, such as protein (or, other amphiphilic) aggregates in vivo, as well as...
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Veröffentlicht in: | BioSystems 2008-12, Vol.94 (3), p.242-247 |
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description | The spherical prototype of a crystalline and/or disorderly formation may help in understanding the final stages of many complex biomolecular arrangements. These stages are important for both naturally organized simple biosystems, such as protein (or, other amphiphilic) aggregates
in vivo, as well as certain their artificial counterparts, mimicking either
in vitro or
in silico their structure–property principal relationship. For our particular one-seed based realization of a protein crystal/aggregate late-stage nucleus grown from nearby fluctuating environment, it turns out that the (osmotic-type) pressure could be, due to local inhomogeneities, and their dynamics shown up in the double layer tightly surrounding the growing object, still an appreciably detectable quantity. This is due to the fact that a special-type generalized thermodynamic (Vojta–Natanson) momentum, subjected to the nucleus’ surface, is manifested interchangeably, whereas the total energy of the solution in the double layer could not be such within the stationary regime explored. It is plausible since the double layer width, related to the object’s surface, contributes ultimately, while based on the so-defined momentum’s changes, to the pressure within this narrow flickering zone, while leaving the total energy fairly unchanged. From the hydrodynamic point of view, the system behaves quite trivially, since the circumventing flow should rather be of laminar, thus not-with-matter supplying, character. |
doi_str_mv | 10.1016/j.biosystems.2008.06.011 |
format | Article |
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in vivo, as well as certain their artificial counterparts, mimicking either
in vitro or
in silico their structure–property principal relationship. For our particular one-seed based realization of a protein crystal/aggregate late-stage nucleus grown from nearby fluctuating environment, it turns out that the (osmotic-type) pressure could be, due to local inhomogeneities, and their dynamics shown up in the double layer tightly surrounding the growing object, still an appreciably detectable quantity. This is due to the fact that a special-type generalized thermodynamic (Vojta–Natanson) momentum, subjected to the nucleus’ surface, is manifested interchangeably, whereas the total energy of the solution in the double layer could not be such within the stationary regime explored. It is plausible since the double layer width, related to the object’s surface, contributes ultimately, while based on the so-defined momentum’s changes, to the pressure within this narrow flickering zone, while leaving the total energy fairly unchanged. From the hydrodynamic point of view, the system behaves quite trivially, since the circumventing flow should rather be of laminar, thus not-with-matter supplying, character.</description><identifier>ISSN: 0303-2647</identifier><identifier>EISSN: 1872-8324</identifier><identifier>DOI: 10.1016/j.biosystems.2008.06.011</identifier><identifier>PMID: 18718503</identifier><language>eng</language><publisher>Ireland: Elsevier Ireland Ltd</publisher><subject>Crystallization ; Immiscibility zone ; Late-stage crystal/aggregate formation ; Least dissipative dynamics ; Macromolecular Substances - chemical synthesis ; Macromolecular Substances - chemistry ; Models, Chemical ; Sphere growth ; Stochastic Processes ; Thermodynamics ; Variational principle</subject><ispartof>BioSystems, 2008-12, Vol.94 (3), p.242-247</ispartof><rights>2008 Elsevier Ireland Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c372t-ec2fda350d46acf618ff18a570ccd8d7bcaa6634abbd005e65bf009f22cb81933</citedby><cites>FETCH-LOGICAL-c372t-ec2fda350d46acf618ff18a570ccd8d7bcaa6634abbd005e65bf009f22cb81933</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.biosystems.2008.06.011$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,778,782,3539,27911,27912,45982</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18718503$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gadomski, A.</creatorcontrib><title>On the spherical prototype of a complex dissipative late-stage formation seen in terms of least action Vojta–Natanson principle</title><title>BioSystems</title><addtitle>Biosystems</addtitle><description>The spherical prototype of a crystalline and/or disorderly formation may help in understanding the final stages of many complex biomolecular arrangements. These stages are important for both naturally organized simple biosystems, such as protein (or, other amphiphilic) aggregates
in vivo, as well as certain their artificial counterparts, mimicking either
in vitro or
in silico their structure–property principal relationship. For our particular one-seed based realization of a protein crystal/aggregate late-stage nucleus grown from nearby fluctuating environment, it turns out that the (osmotic-type) pressure could be, due to local inhomogeneities, and their dynamics shown up in the double layer tightly surrounding the growing object, still an appreciably detectable quantity. This is due to the fact that a special-type generalized thermodynamic (Vojta–Natanson) momentum, subjected to the nucleus’ surface, is manifested interchangeably, whereas the total energy of the solution in the double layer could not be such within the stationary regime explored. It is plausible since the double layer width, related to the object’s surface, contributes ultimately, while based on the so-defined momentum’s changes, to the pressure within this narrow flickering zone, while leaving the total energy fairly unchanged. From the hydrodynamic point of view, the system behaves quite trivially, since the circumventing flow should rather be of laminar, thus not-with-matter supplying, character.</description><subject>Crystallization</subject><subject>Immiscibility zone</subject><subject>Late-stage crystal/aggregate formation</subject><subject>Least dissipative dynamics</subject><subject>Macromolecular Substances - chemical synthesis</subject><subject>Macromolecular Substances - chemistry</subject><subject>Models, Chemical</subject><subject>Sphere growth</subject><subject>Stochastic Processes</subject><subject>Thermodynamics</subject><subject>Variational principle</subject><issn>0303-2647</issn><issn>1872-8324</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkMFu1DAURS0EokPhF5BX7BLsZOJ4llBBi1TRDe3WerGfqUdJHPw8VWcH38Af8iV4mJG6xBtLz_fe53sY41LUUkj1flsPIdKeMk5UN0LoWqhaSPmMraTum0q3zfo5W4lWtFWj1v0Ze0W0FeV0Wr5kZ0UkdSfaFft1M_N8j5yWe0zBwsiXFHPM-wV59By4jdMy4iN3gSgskMMD8hEyVpThO3If01SGceaEOPNQ0jBNdPCOCJQ52H-vd3Gb4c_P318hw0xlsKQw21CiX7MXHkbCN6f7nN1-_vTt4qq6vrn8cvHhurJt3-QKbeMdtJ1wawXWK6m9lxq6XljrtOsHC6BUu4ZhcKUmqm7wQmx809hBy03bnrN3x9xS8McOKZspkMVxhBnjjoza9J0orIpQH4U2RaKE3pS_TpD2RgpzwG-25gm_OeA3QpmCv1jfnnbshgndk_HEuwg-HgVYmj4ETIZswNmiCwltNi6G_2_5C7bboP0</recordid><startdate>20081201</startdate><enddate>20081201</enddate><creator>Gadomski, A.</creator><general>Elsevier Ireland Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20081201</creationdate><title>On the spherical prototype of a complex dissipative late-stage formation seen in terms of least action Vojta–Natanson principle</title><author>Gadomski, A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c372t-ec2fda350d46acf618ff18a570ccd8d7bcaa6634abbd005e65bf009f22cb81933</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Crystallization</topic><topic>Immiscibility zone</topic><topic>Late-stage crystal/aggregate formation</topic><topic>Least dissipative dynamics</topic><topic>Macromolecular Substances - chemical synthesis</topic><topic>Macromolecular Substances - chemistry</topic><topic>Models, Chemical</topic><topic>Sphere growth</topic><topic>Stochastic Processes</topic><topic>Thermodynamics</topic><topic>Variational principle</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gadomski, A.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>BioSystems</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gadomski, A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>On the spherical prototype of a complex dissipative late-stage formation seen in terms of least action Vojta–Natanson principle</atitle><jtitle>BioSystems</jtitle><addtitle>Biosystems</addtitle><date>2008-12-01</date><risdate>2008</risdate><volume>94</volume><issue>3</issue><spage>242</spage><epage>247</epage><pages>242-247</pages><issn>0303-2647</issn><eissn>1872-8324</eissn><abstract>The spherical prototype of a crystalline and/or disorderly formation may help in understanding the final stages of many complex biomolecular arrangements. These stages are important for both naturally organized simple biosystems, such as protein (or, other amphiphilic) aggregates
in vivo, as well as certain their artificial counterparts, mimicking either
in vitro or
in silico their structure–property principal relationship. For our particular one-seed based realization of a protein crystal/aggregate late-stage nucleus grown from nearby fluctuating environment, it turns out that the (osmotic-type) pressure could be, due to local inhomogeneities, and their dynamics shown up in the double layer tightly surrounding the growing object, still an appreciably detectable quantity. This is due to the fact that a special-type generalized thermodynamic (Vojta–Natanson) momentum, subjected to the nucleus’ surface, is manifested interchangeably, whereas the total energy of the solution in the double layer could not be such within the stationary regime explored. It is plausible since the double layer width, related to the object’s surface, contributes ultimately, while based on the so-defined momentum’s changes, to the pressure within this narrow flickering zone, while leaving the total energy fairly unchanged. From the hydrodynamic point of view, the system behaves quite trivially, since the circumventing flow should rather be of laminar, thus not-with-matter supplying, character.</abstract><cop>Ireland</cop><pub>Elsevier Ireland Ltd</pub><pmid>18718503</pmid><doi>10.1016/j.biosystems.2008.06.011</doi><tpages>6</tpages></addata></record> |
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source | MEDLINE; ScienceDirect Journals (5 years ago - present) |
subjects | Crystallization Immiscibility zone Late-stage crystal/aggregate formation Least dissipative dynamics Macromolecular Substances - chemical synthesis Macromolecular Substances - chemistry Models, Chemical Sphere growth Stochastic Processes Thermodynamics Variational principle |
title | On the spherical prototype of a complex dissipative late-stage formation seen in terms of least action Vojta–Natanson principle |
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