Transcription factors in fungi
Transcription factors (TFs) orchestrate gene expression control of a cell and, in many respects, their repertoire determines the life and functionality of the cell. For a better understanding of their regulatory mechanisms, it is essential to know the entire repertoire of TFs of a species. The incre...
Gespeichert in:
| Veröffentlicht in: | FEMS microbiology letters 2008-09, Vol.286 (2), p.145-151 |
|---|---|
| 1. Verfasser: | |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 151 |
|---|---|
| container_issue | 2 |
| container_start_page | 145 |
| container_title | FEMS microbiology letters |
| container_volume | 286 |
| creator | Shelest, Ekaterina |
| description | Transcription factors (TFs) orchestrate gene expression control of a cell and, in many respects, their repertoire determines the life and functionality of the cell. For a better understanding of their regulatory mechanisms, it is essential to know the entire repertoire of TFs of a species. The increasing number of sequenced genomes together with the development of computational methods allow us not only to predict whole sets of TFs but also to analyse and compare them. Such an analysis is required in particular for fungal species, as our knowledge of the potential set of TFs in fungi is very limited. In fact, at present we do not know which TFs can in general be found in fungi, and which of them are strictly fungal specific. Other interesting questions regard the evolutionary relationships of fungal TFs with other kingdoms and the functions of fungal-specific TFs. This minireview addresses these issues. The analysis of predicted occurrences of DNA-binding domains in 62 fungal genomes reveals a set of 37 potential 'fungal' TF families. Six families are fungal-specific, i.e. they do not appear in other kingdoms. Interestingly, the fungal-specific TFs are not restricted to strictly fungal-specific functions. Consideration of fungal TF distributions in different kingdoms provides a platform to discuss the evolution of domains and TFs. |
| doi_str_mv | 10.1111/j.1574-6968.2008.01293.x |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_69545577</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><oup_id>10.1111/j.1574-6968.2008.01293.x</oup_id><sourcerecordid>19712341</sourcerecordid><originalsourceid>FETCH-LOGICAL-c5243-12e82eafb351deac586cc6a204d2c006d19f64bb523ae17fd04428d84edcface3</originalsourceid><addsrcrecordid>eNqNkF1LHDEUhkNR6tb2L-iC1LsZT06-L7woom1hSy_U65DNZGSW2Zk12UH992acxUJp0dwkkOfNefMQMqdQ0rzOViUVihfSSF0igC6BomHl4wcye73YIzNgShcUjDogn1JaAQBHkB_JAdVKG4pyRo5uouuSj81m2_TdvHZ-28c0b_Jx6O6az2S_dm0KX3b7Ibm9ury5-FEsfn__efFtUXiBnBUUg8bg6iUTtArOCy29lw6BV-gBZEVNLflyKZC5QFVdAeeoK81D5fPIwA7J6fTuJvb3Q0hbu26SD23rutAPyUojuBBKvQlSoygyTjN48he46ofY5U9YZCBzba55pvRE-dinFENtN7FZu_hkKdhRtV3Z0agdjdpRtX1RbR9z9Gg3YFiuQ_UnuHObga87wCXv2jqL9k165RCE0Wggc-cT99C04endBezVr8V4ynk25fth85908a_6x1Oqdr11dzE3u71GoAzAIJeg2DO_Oq_R</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2306524484</pqid></control><display><type>article</type><title>Transcription factors in fungi</title><source>MEDLINE</source><source>Oxford University Press Journals All Titles (1996-Current)</source><source>Wiley Online Library All Journals</source><creator>Shelest, Ekaterina</creator><creatorcontrib>Shelest, Ekaterina</creatorcontrib><description>Transcription factors (TFs) orchestrate gene expression control of a cell and, in many respects, their repertoire determines the life and functionality of the cell. For a better understanding of their regulatory mechanisms, it is essential to know the entire repertoire of TFs of a species. The increasing number of sequenced genomes together with the development of computational methods allow us not only to predict whole sets of TFs but also to analyse and compare them. Such an analysis is required in particular for fungal species, as our knowledge of the potential set of TFs in fungi is very limited. In fact, at present we do not know which TFs can in general be found in fungi, and which of them are strictly fungal specific. Other interesting questions regard the evolutionary relationships of fungal TFs with other kingdoms and the functions of fungal-specific TFs. This minireview addresses these issues. The analysis of predicted occurrences of DNA-binding domains in 62 fungal genomes reveals a set of 37 potential 'fungal' TF families. Six families are fungal-specific, i.e. they do not appear in other kingdoms. Interestingly, the fungal-specific TFs are not restricted to strictly fungal-specific functions. Consideration of fungal TF distributions in different kingdoms provides a platform to discuss the evolution of domains and TFs.</description><identifier>ISSN: 0378-1097</identifier><identifier>EISSN: 1574-6968</identifier><identifier>DOI: 10.1111/j.1574-6968.2008.01293.x</identifier><identifier>PMID: 18789126</identifier><identifier>CODEN: FMLED7</identifier><language>eng</language><publisher>Oxford, UK: Oxford, UK : Blackwell Publishing Ltd</publisher><subject>Biological and medical sciences ; Computer applications ; Deoxyribonucleic acid ; DNA ; DNA-binding domain ; Domains ; Fundamental and applied biological sciences. Psychology ; Fungal Proteins - genetics ; Fungal Proteins - physiology ; fungal-specific ; Fungi ; Fungi - physiology ; Gene expression ; Genome, Fungal ; Genomes ; Growth, nutrition, metabolism, transports, enzymes. Molecular biology ; horizontal gene transfer ; Microbiology ; Molecular and cellular biology ; Molecular genetics ; Mycology ; Proteomics ; Regulatory mechanisms (biology) ; transcription factor ; Transcription factors ; Transcription Factors - genetics ; Transcription Factors - physiology ; Transcription, Genetic ; Transcription. Transcription factor. Splicing. Rna processing</subject><ispartof>FEMS microbiology letters, 2008-09, Vol.286 (2), p.145-151</ispartof><rights>2008 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd 2008</rights><rights>Hans Knoll Institute. Journal compilation © 2008 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd</rights><rights>2009 INIST-CNRS</rights><rights>2008 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5243-12e82eafb351deac586cc6a204d2c006d19f64bb523ae17fd04428d84edcface3</citedby><cites>FETCH-LOGICAL-c5243-12e82eafb351deac586cc6a204d2c006d19f64bb523ae17fd04428d84edcface3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1574-6968.2008.01293.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1574-6968.2008.01293.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=20598290$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18789126$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Shelest, Ekaterina</creatorcontrib><title>Transcription factors in fungi</title><title>FEMS microbiology letters</title><addtitle>FEMS Microbiol Lett</addtitle><description>Transcription factors (TFs) orchestrate gene expression control of a cell and, in many respects, their repertoire determines the life and functionality of the cell. For a better understanding of their regulatory mechanisms, it is essential to know the entire repertoire of TFs of a species. The increasing number of sequenced genomes together with the development of computational methods allow us not only to predict whole sets of TFs but also to analyse and compare them. Such an analysis is required in particular for fungal species, as our knowledge of the potential set of TFs in fungi is very limited. In fact, at present we do not know which TFs can in general be found in fungi, and which of them are strictly fungal specific. Other interesting questions regard the evolutionary relationships of fungal TFs with other kingdoms and the functions of fungal-specific TFs. This minireview addresses these issues. The analysis of predicted occurrences of DNA-binding domains in 62 fungal genomes reveals a set of 37 potential 'fungal' TF families. Six families are fungal-specific, i.e. they do not appear in other kingdoms. Interestingly, the fungal-specific TFs are not restricted to strictly fungal-specific functions. Consideration of fungal TF distributions in different kingdoms provides a platform to discuss the evolution of domains and TFs.</description><subject>Biological and medical sciences</subject><subject>Computer applications</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA-binding domain</subject><subject>Domains</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Fungal Proteins - genetics</subject><subject>Fungal Proteins - physiology</subject><subject>fungal-specific</subject><subject>Fungi</subject><subject>Fungi - physiology</subject><subject>Gene expression</subject><subject>Genome, Fungal</subject><subject>Genomes</subject><subject>Growth, nutrition, metabolism, transports, enzymes. Molecular biology</subject><subject>horizontal gene transfer</subject><subject>Microbiology</subject><subject>Molecular and cellular biology</subject><subject>Molecular genetics</subject><subject>Mycology</subject><subject>Proteomics</subject><subject>Regulatory mechanisms (biology)</subject><subject>transcription factor</subject><subject>Transcription factors</subject><subject>Transcription Factors - genetics</subject><subject>Transcription Factors - physiology</subject><subject>Transcription, Genetic</subject><subject>Transcription. Transcription factor. Splicing. Rna processing</subject><issn>0378-1097</issn><issn>1574-6968</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkF1LHDEUhkNR6tb2L-iC1LsZT06-L7woom1hSy_U65DNZGSW2Zk12UH992acxUJp0dwkkOfNefMQMqdQ0rzOViUVihfSSF0igC6BomHl4wcye73YIzNgShcUjDogn1JaAQBHkB_JAdVKG4pyRo5uouuSj81m2_TdvHZ-28c0b_Jx6O6az2S_dm0KX3b7Ibm9ury5-FEsfn__efFtUXiBnBUUg8bg6iUTtArOCy29lw6BV-gBZEVNLflyKZC5QFVdAeeoK81D5fPIwA7J6fTuJvb3Q0hbu26SD23rutAPyUojuBBKvQlSoygyTjN48he46ofY5U9YZCBzba55pvRE-dinFENtN7FZu_hkKdhRtV3Z0agdjdpRtX1RbR9z9Gg3YFiuQ_UnuHObga87wCXv2jqL9k165RCE0Wggc-cT99C04endBezVr8V4ynk25fth85908a_6x1Oqdr11dzE3u71GoAzAIJeg2DO_Oq_R</recordid><startdate>200809</startdate><enddate>200809</enddate><creator>Shelest, Ekaterina</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing Ltd</general><general>Wiley-Blackwell</general><general>Oxford University Press</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>200809</creationdate><title>Transcription factors in fungi</title><author>Shelest, Ekaterina</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5243-12e82eafb351deac586cc6a204d2c006d19f64bb523ae17fd04428d84edcface3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Biological and medical sciences</topic><topic>Computer applications</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA-binding domain</topic><topic>Domains</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Fungal Proteins - genetics</topic><topic>Fungal Proteins - physiology</topic><topic>fungal-specific</topic><topic>Fungi</topic><topic>Fungi - physiology</topic><topic>Gene expression</topic><topic>Genome, Fungal</topic><topic>Genomes</topic><topic>Growth, nutrition, metabolism, transports, enzymes. Molecular biology</topic><topic>horizontal gene transfer</topic><topic>Microbiology</topic><topic>Molecular and cellular biology</topic><topic>Molecular genetics</topic><topic>Mycology</topic><topic>Proteomics</topic><topic>Regulatory mechanisms (biology)</topic><topic>transcription factor</topic><topic>Transcription factors</topic><topic>Transcription Factors - genetics</topic><topic>Transcription Factors - physiology</topic><topic>Transcription, Genetic</topic><topic>Transcription. Transcription factor. Splicing. Rna processing</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shelest, Ekaterina</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>FEMS microbiology letters</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shelest, Ekaterina</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Transcription factors in fungi</atitle><jtitle>FEMS microbiology letters</jtitle><addtitle>FEMS Microbiol Lett</addtitle><date>2008-09</date><risdate>2008</risdate><volume>286</volume><issue>2</issue><spage>145</spage><epage>151</epage><pages>145-151</pages><issn>0378-1097</issn><eissn>1574-6968</eissn><coden>FMLED7</coden><abstract>Transcription factors (TFs) orchestrate gene expression control of a cell and, in many respects, their repertoire determines the life and functionality of the cell. For a better understanding of their regulatory mechanisms, it is essential to know the entire repertoire of TFs of a species. The increasing number of sequenced genomes together with the development of computational methods allow us not only to predict whole sets of TFs but also to analyse and compare them. Such an analysis is required in particular for fungal species, as our knowledge of the potential set of TFs in fungi is very limited. In fact, at present we do not know which TFs can in general be found in fungi, and which of them are strictly fungal specific. Other interesting questions regard the evolutionary relationships of fungal TFs with other kingdoms and the functions of fungal-specific TFs. This minireview addresses these issues. The analysis of predicted occurrences of DNA-binding domains in 62 fungal genomes reveals a set of 37 potential 'fungal' TF families. Six families are fungal-specific, i.e. they do not appear in other kingdoms. Interestingly, the fungal-specific TFs are not restricted to strictly fungal-specific functions. Consideration of fungal TF distributions in different kingdoms provides a platform to discuss the evolution of domains and TFs.</abstract><cop>Oxford, UK</cop><pub>Oxford, UK : Blackwell Publishing Ltd</pub><pmid>18789126</pmid><doi>10.1111/j.1574-6968.2008.01293.x</doi><tpages>7</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0378-1097 |
| ispartof | FEMS microbiology letters, 2008-09, Vol.286 (2), p.145-151 |
| issn | 0378-1097 1574-6968 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_69545577 |
| source | MEDLINE; Oxford University Press Journals All Titles (1996-Current); Wiley Online Library All Journals |
| subjects | Biological and medical sciences Computer applications Deoxyribonucleic acid DNA DNA-binding domain Domains Fundamental and applied biological sciences. Psychology Fungal Proteins - genetics Fungal Proteins - physiology fungal-specific Fungi Fungi - physiology Gene expression Genome, Fungal Genomes Growth, nutrition, metabolism, transports, enzymes. Molecular biology horizontal gene transfer Microbiology Molecular and cellular biology Molecular genetics Mycology Proteomics Regulatory mechanisms (biology) transcription factor Transcription factors Transcription Factors - genetics Transcription Factors - physiology Transcription, Genetic Transcription. Transcription factor. Splicing. Rna processing |
| title | Transcription factors in fungi |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-07T05%3A09%3A53IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Transcription%20factors%20in%20fungi&rft.jtitle=FEMS%20microbiology%20letters&rft.au=Shelest,%20Ekaterina&rft.date=2008-09&rft.volume=286&rft.issue=2&rft.spage=145&rft.epage=151&rft.pages=145-151&rft.issn=0378-1097&rft.eissn=1574-6968&rft.coden=FMLED7&rft_id=info:doi/10.1111/j.1574-6968.2008.01293.x&rft_dat=%3Cproquest_cross%3E19712341%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2306524484&rft_id=info:pmid/18789126&rft_oup_id=10.1111/j.1574-6968.2008.01293.x&rfr_iscdi=true |