On Application of Constitutional Descriptors for Merging of Quinoxaline Data Sets Using Linear Statistical Methods
The present paper is an attempt for unifying two different quinoxaline data sets with a wide range of substituents in 2, 3, 7, and 8 positions having excellent antitubercular activities with a view to developing robust and reliable structure-activity relationships. The merging has been performed for...
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description | The present paper is an attempt for unifying two different quinoxaline data sets with a wide range of substituents in 2, 3, 7, and 8 positions having excellent antitubercular activities with a view to developing robust and reliable structure-activity relationships. The merging has been performed for these two sets of quinoxaline 1,4-di-N-oxides derivatives comprising 29 and 18 compounds, respectively, on the basis of constitutional descriptors, which denotes the structural characterization of the molecules. Principal component analysis was performed to see the distribution of the compounds from two data sets for the constitutional descriptors. The distribution of compounds in score plot based on constitutional descriptors suggests unification of quinoxaline data sets which is useful for the model development. Outlier detection was performed from the standpoint of residual analysis of the partial least squares regression models. The superiority of the constitutional descriptors over other calculated molecular descriptors has been established from the standpoint of leave-one-out cross-validation technique associated with partial least squares regression analysis. Internal validation through the leave-many-out methodology was also performed with good results, assuring the stability of the models. The results obtained from linear partial least squares regression analysis lead to a statistically significant and robust quantitative structure-activity relationship modeling. |
doi_str_mv | 10.1111/j.1747-0285.2008.00686.x |
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The merging has been performed for these two sets of quinoxaline 1,4-di-N-oxides derivatives comprising 29 and 18 compounds, respectively, on the basis of constitutional descriptors, which denotes the structural characterization of the molecules. Principal component analysis was performed to see the distribution of the compounds from two data sets for the constitutional descriptors. The distribution of compounds in score plot based on constitutional descriptors suggests unification of quinoxaline data sets which is useful for the model development. Outlier detection was performed from the standpoint of residual analysis of the partial least squares regression models. The superiority of the constitutional descriptors over other calculated molecular descriptors has been established from the standpoint of leave-one-out cross-validation technique associated with partial least squares regression analysis. Internal validation through the leave-many-out methodology was also performed with good results, assuring the stability of the models. 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The merging has been performed for these two sets of quinoxaline 1,4-di-N-oxides derivatives comprising 29 and 18 compounds, respectively, on the basis of constitutional descriptors, which denotes the structural characterization of the molecules. Principal component analysis was performed to see the distribution of the compounds from two data sets for the constitutional descriptors. The distribution of compounds in score plot based on constitutional descriptors suggests unification of quinoxaline data sets which is useful for the model development. Outlier detection was performed from the standpoint of residual analysis of the partial least squares regression models. The superiority of the constitutional descriptors over other calculated molecular descriptors has been established from the standpoint of leave-one-out cross-validation technique associated with partial least squares regression analysis. Internal validation through the leave-many-out methodology was also performed with good results, assuring the stability of the models. The results obtained from linear partial least squares regression analysis lead to a statistically significant and robust quantitative structure-activity relationship modeling.</description><subject>Antibiotics, Antitubercular - chemistry</subject><subject>Antibiotics, Antitubercular - pharmacology</subject><subject>Microbial Viability - drug effects</subject><subject>Models, Biological</subject><subject>Molecular Structure</subject><subject>partial least squares</subject><subject>principal component analysis</subject><subject>Quantitative Structure-Activity Relationship</subject><subject>quinoxaline compounds</subject><subject>Quinoxalines - chemistry</subject><subject>Quinoxalines - pharmacology</subject><subject>theoretical molecular descriptors</subject><issn>1747-0277</issn><issn>1747-0285</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkE9v0zAchqMJtI2NrwA-cWtmO47tHDiMFAao24S6akfrF9cpLmmc2Ynovj3OUpXrfPDf530tPUmCCE5JHFfblAgmZpjKPKUYyxRjLnm6P0nOjw9vjnshzpJ3IWwxZiyn8jQ5I5JnoijweeLvW3TddY3V0FvXIlej0rWht_0wnqFBcxO0t13vfEC18-jW-I1tNyP5a7Ct20NjW4Pm0ANamj6gVRifF_ESPFr2sTfW6dh0a_rfbh0uk7c1NMG8P6wXyerb14fy-2xxf_OjvF7MNKMFj7OuK50RqgUxIIXgBjOgREDFqZTM6AK0kRTynK4pVLLKMhETGiDHrObZRfJp6u28expM6NXOBm2aBlrjhqB4wSSngkZQTqD2LgRvatV5uwP_rAhWo2-1VaNKNWpVo2_14lvtY_TD4Y-h2pn1_-BBcAQ-T8Bf25jnVxer8st8HncxP5vyUaLZH_Pg_yguMpGrx7sbdUfKR0HYg_oZ-Y8TX4NTsPE2qNWSYpJhXBBJGc_-AbFGqPo</recordid><startdate>200808</startdate><enddate>200808</enddate><creator>Ghosh, Payel</creator><creator>Vracko, Marjan</creator><creator>Chattopadhyay, Asis Kumar</creator><creator>Bagchi, Manish C</creator><general>Oxford, UK : Blackwell Publishing Ltd</general><general>Blackwell Publishing Ltd</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>200808</creationdate><title>On Application of Constitutional Descriptors for Merging of Quinoxaline Data Sets Using Linear Statistical Methods</title><author>Ghosh, Payel ; Vracko, Marjan ; Chattopadhyay, Asis Kumar ; Bagchi, Manish C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4296-c4cfbc312c71ea8776e04a217ab62884ec9ace82a552d2ab8b337fbccaa504f63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Antibiotics, Antitubercular - chemistry</topic><topic>Antibiotics, Antitubercular - pharmacology</topic><topic>Microbial Viability - drug effects</topic><topic>Models, Biological</topic><topic>Molecular Structure</topic><topic>partial least squares</topic><topic>principal component analysis</topic><topic>Quantitative Structure-Activity Relationship</topic><topic>quinoxaline compounds</topic><topic>Quinoxalines - chemistry</topic><topic>Quinoxalines - pharmacology</topic><topic>theoretical molecular descriptors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ghosh, Payel</creatorcontrib><creatorcontrib>Vracko, Marjan</creatorcontrib><creatorcontrib>Chattopadhyay, Asis Kumar</creatorcontrib><creatorcontrib>Bagchi, Manish C</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Chemical biology & drug design</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ghosh, Payel</au><au>Vracko, Marjan</au><au>Chattopadhyay, Asis Kumar</au><au>Bagchi, Manish C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>On Application of Constitutional Descriptors for Merging of Quinoxaline Data Sets Using Linear Statistical Methods</atitle><jtitle>Chemical biology & drug design</jtitle><addtitle>Chem Biol Drug Des</addtitle><date>2008-08</date><risdate>2008</risdate><volume>72</volume><issue>2</issue><spage>155</spage><epage>162</epage><pages>155-162</pages><issn>1747-0277</issn><eissn>1747-0285</eissn><abstract>The present paper is an attempt for unifying two different quinoxaline data sets with a wide range of substituents in 2, 3, 7, and 8 positions having excellent antitubercular activities with a view to developing robust and reliable structure-activity relationships. The merging has been performed for these two sets of quinoxaline 1,4-di-N-oxides derivatives comprising 29 and 18 compounds, respectively, on the basis of constitutional descriptors, which denotes the structural characterization of the molecules. Principal component analysis was performed to see the distribution of the compounds from two data sets for the constitutional descriptors. The distribution of compounds in score plot based on constitutional descriptors suggests unification of quinoxaline data sets which is useful for the model development. Outlier detection was performed from the standpoint of residual analysis of the partial least squares regression models. The superiority of the constitutional descriptors over other calculated molecular descriptors has been established from the standpoint of leave-one-out cross-validation technique associated with partial least squares regression analysis. 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subjects | Antibiotics, Antitubercular - chemistry Antibiotics, Antitubercular - pharmacology Microbial Viability - drug effects Models, Biological Molecular Structure partial least squares principal component analysis Quantitative Structure-Activity Relationship quinoxaline compounds Quinoxalines - chemistry Quinoxalines - pharmacology theoretical molecular descriptors |
title | On Application of Constitutional Descriptors for Merging of Quinoxaline Data Sets Using Linear Statistical Methods |
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