Usefulness of Statistic Experimental Designs in Enzymology: Example with Recombinant hCYP3A4 and 1A2
First, the effects of 10 incubation factors were screened altogether on nifedipine dehydrogenase (NIF) and methoxyresorufin O-deethylase (MROD) activities catalyzed by recombinant human CYP3A4 and 1A2, respectively. Using a statistic experimental design, only 36 assays were needed to be exhaustive....
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Veröffentlicht in: | Analytical biochemistry 1999-12, Vol.276 (1), p.18-26 |
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description | First, the effects of 10 incubation factors were screened altogether on nifedipine dehydrogenase (NIF) and methoxyresorufin O-deethylase (MROD) activities catalyzed by recombinant human CYP3A4 and 1A2, respectively. Using a statistic experimental design, only 36 assays were needed to be exhaustive. Eight factors influenced CYP3A4-mediated NIF activity: buffer type, pH, temperature, Mg/EDTA, cytochrome b5, NADPH-P450 reductase, NADH, and solvent. Two factors had no significant effect: total ionic concentration and catalase/reduced glutathione. Six factors influenced CYP1A2-mediated MROD rates: buffer type, pH, temperature, Mg/EDTA, NADH, and glycerol. Four factors had no significant effect: total ionic concentration, cytochrome b5, reductase, and NAD+. Secondly, the combined effects of ionic strength and Mg concentration on NIF/CYP3A4 were studied and easily modeled using another statistic experimental design. The effect of Mg was strong at a constant ionic strength of 100 mM and negligible at a constant ionic strength of 500 mM. Thirdly, the effects of influencing factors and their interactions on MROD/CYP1A2 were modeled after 40 assays using a third statistic experimental design. Later experiments confirmed the predictivity of the models and the efficiency of optimized conditions. This approach can be applied to other biochemistry areas. |
doi_str_mv | 10.1006/abio.1999.4304 |
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Using a statistic experimental design, only 36 assays were needed to be exhaustive. Eight factors influenced CYP3A4-mediated NIF activity: buffer type, pH, temperature, Mg/EDTA, cytochrome b5, NADPH-P450 reductase, NADH, and solvent. Two factors had no significant effect: total ionic concentration and catalase/reduced glutathione. Six factors influenced CYP1A2-mediated MROD rates: buffer type, pH, temperature, Mg/EDTA, NADH, and glycerol. Four factors had no significant effect: total ionic concentration, cytochrome b5, reductase, and NAD+. Secondly, the combined effects of ionic strength and Mg concentration on NIF/CYP3A4 were studied and easily modeled using another statistic experimental design. The effect of Mg was strong at a constant ionic strength of 100 mM and negligible at a constant ionic strength of 500 mM. Thirdly, the effects of influencing factors and their interactions on MROD/CYP1A2 were modeled after 40 assays using a third statistic experimental design. Later experiments confirmed the predictivity of the models and the efficiency of optimized conditions. This approach can be applied to other biochemistry areas.</description><identifier>ISSN: 0003-2697</identifier><identifier>EISSN: 1096-0309</identifier><identifier>DOI: 10.1006/abio.1999.4304</identifier><identifier>PMID: 10585740</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Biometry ; CYP1A2 ; CYP3A4 ; Cytochrome P-450 CYP1A2 - genetics ; Cytochrome P-450 CYP1A2 - metabolism ; Cytochrome P-450 CYP3A ; Cytochrome P-450 Enzyme System - genetics ; Cytochrome P-450 Enzyme System - metabolism ; drug metabolism ; enzyme ; experimental design ; heterologous expression ; Humans ; In Vitro Techniques ; Kinetics ; Magnesium - pharmacology ; membrane ; Mixed Function Oxygenases - genetics ; Mixed Function Oxygenases - metabolism ; modeling ; Models, Biological ; MROD ; nifedipine ; optimization ; Osmolar Concentration ; Recombinant Proteins - genetics ; Recombinant Proteins - metabolism ; Saccharomyces cerevisiae - genetics ; Substrate Specificity ; yeast</subject><ispartof>Analytical biochemistry, 1999-12, Vol.276 (1), p.18-26</ispartof><rights>1999 Academic Press</rights><rights>Copyright 1999 Academic Press.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c340t-3f42697ce857b0fe3f5307c888fa6b0fb3706e91926c0645d3bbbc2e9992a34c3</citedby><cites>FETCH-LOGICAL-c340t-3f42697ce857b0fe3f5307c888fa6b0fb3706e91926c0645d3bbbc2e9992a34c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1006/abio.1999.4304$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10585740$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bournique, B.</creatorcontrib><creatorcontrib>Petry, M.</creatorcontrib><creatorcontrib>Gousset, G.</creatorcontrib><title>Usefulness of Statistic Experimental Designs in Enzymology: Example with Recombinant hCYP3A4 and 1A2</title><title>Analytical biochemistry</title><addtitle>Anal Biochem</addtitle><description>First, the effects of 10 incubation factors were screened altogether on nifedipine dehydrogenase (NIF) and methoxyresorufin O-deethylase (MROD) activities catalyzed by recombinant human CYP3A4 and 1A2, respectively. Using a statistic experimental design, only 36 assays were needed to be exhaustive. Eight factors influenced CYP3A4-mediated NIF activity: buffer type, pH, temperature, Mg/EDTA, cytochrome b5, NADPH-P450 reductase, NADH, and solvent. Two factors had no significant effect: total ionic concentration and catalase/reduced glutathione. Six factors influenced CYP1A2-mediated MROD rates: buffer type, pH, temperature, Mg/EDTA, NADH, and glycerol. Four factors had no significant effect: total ionic concentration, cytochrome b5, reductase, and NAD+. Secondly, the combined effects of ionic strength and Mg concentration on NIF/CYP3A4 were studied and easily modeled using another statistic experimental design. The effect of Mg was strong at a constant ionic strength of 100 mM and negligible at a constant ionic strength of 500 mM. Thirdly, the effects of influencing factors and their interactions on MROD/CYP1A2 were modeled after 40 assays using a third statistic experimental design. Later experiments confirmed the predictivity of the models and the efficiency of optimized conditions. This approach can be applied to other biochemistry areas.</description><subject>Biometry</subject><subject>CYP1A2</subject><subject>CYP3A4</subject><subject>Cytochrome P-450 CYP1A2 - genetics</subject><subject>Cytochrome P-450 CYP1A2 - metabolism</subject><subject>Cytochrome P-450 CYP3A</subject><subject>Cytochrome P-450 Enzyme System - genetics</subject><subject>Cytochrome P-450 Enzyme System - metabolism</subject><subject>drug metabolism</subject><subject>enzyme</subject><subject>experimental design</subject><subject>heterologous expression</subject><subject>Humans</subject><subject>In Vitro Techniques</subject><subject>Kinetics</subject><subject>Magnesium - pharmacology</subject><subject>membrane</subject><subject>Mixed Function Oxygenases - genetics</subject><subject>Mixed Function Oxygenases - metabolism</subject><subject>modeling</subject><subject>Models, Biological</subject><subject>MROD</subject><subject>nifedipine</subject><subject>optimization</subject><subject>Osmolar Concentration</subject><subject>Recombinant Proteins - genetics</subject><subject>Recombinant Proteins - metabolism</subject><subject>Saccharomyces cerevisiae - genetics</subject><subject>Substrate Specificity</subject><subject>yeast</subject><issn>0003-2697</issn><issn>1096-0309</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1999</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kE1P3DAQhq2qCBbKtcfKp96yjGPHG_e22m4BCQnEx6Eny3Em4Cqxt7G3sP31OFoOXDiNNHrm1bwPIV8ZzBmAPDONC3OmlJoLDuITmTFQsgAO6jOZAQAvSqkWR-Q4xj8AjIlKHpIjBlVdLQTMSPsQsdv2HmOkoaN3ySQXk7N0_bLB0Q3ok-npT4zu0UfqPF37_7sh9OFx9yMzZtj0SJ9deqK3aMPQOG98ok-r3zd8KajxLWXL8gs56Ewf8fRtnpCHX-v71UVxdX1-uVpeFZYLSAXvxPSsxfxbAx3yruKwsHVdd0bmRcMXIFExVUoLUlQtb5rGlpjbl4YLy0_I933uZgx_txiTHly02PfGY9hGLRUXTIkyg_M9aMcQ44id3uSuZtxpBnryqievevKqJ6_54Ntb8rYZsH2H70VmoN4DmPv9czjqaB16i60b0SbdBvdR9itAMoaX</recordid><startdate>19991201</startdate><enddate>19991201</enddate><creator>Bournique, B.</creator><creator>Petry, M.</creator><creator>Gousset, G.</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>19991201</creationdate><title>Usefulness of Statistic Experimental Designs in Enzymology: Example with Recombinant hCYP3A4 and 1A2</title><author>Bournique, B. ; Petry, M. ; Gousset, G.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c340t-3f42697ce857b0fe3f5307c888fa6b0fb3706e91926c0645d3bbbc2e9992a34c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1999</creationdate><topic>Biometry</topic><topic>CYP1A2</topic><topic>CYP3A4</topic><topic>Cytochrome P-450 CYP1A2 - genetics</topic><topic>Cytochrome P-450 CYP1A2 - metabolism</topic><topic>Cytochrome P-450 CYP3A</topic><topic>Cytochrome P-450 Enzyme System - genetics</topic><topic>Cytochrome P-450 Enzyme System - metabolism</topic><topic>drug metabolism</topic><topic>enzyme</topic><topic>experimental design</topic><topic>heterologous expression</topic><topic>Humans</topic><topic>In Vitro Techniques</topic><topic>Kinetics</topic><topic>Magnesium - pharmacology</topic><topic>membrane</topic><topic>Mixed Function Oxygenases - genetics</topic><topic>Mixed Function Oxygenases - metabolism</topic><topic>modeling</topic><topic>Models, Biological</topic><topic>MROD</topic><topic>nifedipine</topic><topic>optimization</topic><topic>Osmolar Concentration</topic><topic>Recombinant Proteins - genetics</topic><topic>Recombinant Proteins - metabolism</topic><topic>Saccharomyces cerevisiae - genetics</topic><topic>Substrate Specificity</topic><topic>yeast</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bournique, B.</creatorcontrib><creatorcontrib>Petry, M.</creatorcontrib><creatorcontrib>Gousset, G.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Analytical biochemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bournique, B.</au><au>Petry, M.</au><au>Gousset, G.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Usefulness of Statistic Experimental Designs in Enzymology: Example with Recombinant hCYP3A4 and 1A2</atitle><jtitle>Analytical biochemistry</jtitle><addtitle>Anal Biochem</addtitle><date>1999-12-01</date><risdate>1999</risdate><volume>276</volume><issue>1</issue><spage>18</spage><epage>26</epage><pages>18-26</pages><issn>0003-2697</issn><eissn>1096-0309</eissn><abstract>First, the effects of 10 incubation factors were screened altogether on nifedipine dehydrogenase (NIF) and methoxyresorufin O-deethylase (MROD) activities catalyzed by recombinant human CYP3A4 and 1A2, respectively. Using a statistic experimental design, only 36 assays were needed to be exhaustive. Eight factors influenced CYP3A4-mediated NIF activity: buffer type, pH, temperature, Mg/EDTA, cytochrome b5, NADPH-P450 reductase, NADH, and solvent. Two factors had no significant effect: total ionic concentration and catalase/reduced glutathione. Six factors influenced CYP1A2-mediated MROD rates: buffer type, pH, temperature, Mg/EDTA, NADH, and glycerol. Four factors had no significant effect: total ionic concentration, cytochrome b5, reductase, and NAD+. Secondly, the combined effects of ionic strength and Mg concentration on NIF/CYP3A4 were studied and easily modeled using another statistic experimental design. The effect of Mg was strong at a constant ionic strength of 100 mM and negligible at a constant ionic strength of 500 mM. Thirdly, the effects of influencing factors and their interactions on MROD/CYP1A2 were modeled after 40 assays using a third statistic experimental design. Later experiments confirmed the predictivity of the models and the efficiency of optimized conditions. This approach can be applied to other biochemistry areas.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>10585740</pmid><doi>10.1006/abio.1999.4304</doi><tpages>9</tpages></addata></record> |
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subjects | Biometry CYP1A2 CYP3A4 Cytochrome P-450 CYP1A2 - genetics Cytochrome P-450 CYP1A2 - metabolism Cytochrome P-450 CYP3A Cytochrome P-450 Enzyme System - genetics Cytochrome P-450 Enzyme System - metabolism drug metabolism enzyme experimental design heterologous expression Humans In Vitro Techniques Kinetics Magnesium - pharmacology membrane Mixed Function Oxygenases - genetics Mixed Function Oxygenases - metabolism modeling Models, Biological MROD nifedipine optimization Osmolar Concentration Recombinant Proteins - genetics Recombinant Proteins - metabolism Saccharomyces cerevisiae - genetics Substrate Specificity yeast |
title | Usefulness of Statistic Experimental Designs in Enzymology: Example with Recombinant hCYP3A4 and 1A2 |
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