Biophysical and Biochemical Characterization of a Hyperthermostable and Ca²⁺-independent α-Amylase of an Extreme Thermophile Geobacillus thermoleovorans
α-Amylases reported from various microbial sources have been shown to be moderately thermostable and Ca²⁺ dependent. The bacterial strain used in this investigation is an extremely thermophilic bacterium Geobacillus thermoleovorans that produces a novel α-amylase (26 kDa; α-amylase gt), which is hyp...
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description | α-Amylases reported from various microbial sources have been shown to be moderately thermostable and Ca²⁺ dependent. The bacterial strain used in this investigation is an extremely thermophilic bacterium Geobacillus thermoleovorans that produces a novel α-amylase (26 kDa; α-amylase gt), which is hyperthermostable (T(opt) 100 °C) and does not require Ca²⁺ for its activity/stability. These special features of α-amylase gt make it applicable in starch saccharification process. The structural aspects of α-amylase gt are, therefore, of significant interest to understand its structure-function relationship. The circular dichroism spectroscopic data revealed the native α-amylase gt to contain 25% α-helix, 21% β-sheet, and 54% random coils. The addition of urea, at high concentration (8 M), appeared to expose the buried Trp residues of the native α-amylase gt to the aqueous environment and thus showed low fluorophore. Fluorescence-quenching experiments using KI, CsCl, N-bromosuccinimide, and acrylamide revealed interesting features of the tryptophan microenvironment. Analysis of K(sv) and f(a) values of KI, CsCl, and acrylamide suggested the overall Trp microenvironment in α-amylase to be slightly electropositive. Fluorescence-quenching studies with acrylamide revealed the occurrence of both collisional as well as static quenching processes. There was no change in the α-helix content or the enzyme activity with an increase in temperature (60-100 °C) that suggested a critical role of the α-helix content in maintaining the catalytic activity. |
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The bacterial strain used in this investigation is an extremely thermophilic bacterium Geobacillus thermoleovorans that produces a novel α-amylase (26 kDa; α-amylase gt), which is hyperthermostable (T(opt) 100 °C) and does not require Ca²⁺ for its activity/stability. These special features of α-amylase gt make it applicable in starch saccharification process. The structural aspects of α-amylase gt are, therefore, of significant interest to understand its structure-function relationship. The circular dichroism spectroscopic data revealed the native α-amylase gt to contain 25% α-helix, 21% β-sheet, and 54% random coils. The addition of urea, at high concentration (8 M), appeared to expose the buried Trp residues of the native α-amylase gt to the aqueous environment and thus showed low fluorophore. Fluorescence-quenching experiments using KI, CsCl, N-bromosuccinimide, and acrylamide revealed interesting features of the tryptophan microenvironment. Analysis of K(sv) and f(a) values of KI, CsCl, and acrylamide suggested the overall Trp microenvironment in α-amylase to be slightly electropositive. Fluorescence-quenching studies with acrylamide revealed the occurrence of both collisional as well as static quenching processes. There was no change in the α-helix content or the enzyme activity with an increase in temperature (60-100 °C) that suggested a critical role of the α-helix content in maintaining the catalytic activity.</description><identifier>ISSN: 0273-2289</identifier><identifier>EISSN: 1559-0291</identifier><identifier>DOI: 10.1007/s12010-008-8171-x</identifier><identifier>PMID: 18443744</identifier><identifier>CODEN: ABIBDL</identifier><language>eng</language><publisher>New York: Humana Press Inc</publisher><subject>alpha-amylase ; alpha-Amylases - metabolism ; Bacillaceae - enzymology ; Bacillaceae - genetics ; Bacillaceae - metabolism ; Bacillus thermoleovorans ; Biochemistry ; Biological and medical sciences ; biophysics ; Biotechnology ; calcium ; Calcium - metabolism ; Chemistry ; Chemistry and Materials Science ; circular dichroism spectroscopy ; Enzyme Stability ; fluorescence ; Fundamental and applied biological sciences. Psychology ; saccharification ; starch ; strains ; Temperature ; thermal stability ; thermophilic bacteria ; tryptophan ; urea</subject><ispartof>Applied biochemistry and biotechnology, 2008-08, Vol.150 (2), p.205-219</ispartof><rights>Humana Press 2008</rights><rights>2008 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c326t-8eb3dfd611dfcbd97746349a764fcc8abdf8f011cee7ffaf30f8cb25ba15c16c3</citedby><cites>FETCH-LOGICAL-c326t-8eb3dfd611dfcbd97746349a764fcc8abdf8f011cee7ffaf30f8cb25ba15c16c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s12010-008-8171-x$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s12010-008-8171-x$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27923,27924,41487,42556,51318</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=20547906$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18443744$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Uma Maheswar Rao, J.L</creatorcontrib><creatorcontrib>Satyanarayana, T</creatorcontrib><title>Biophysical and Biochemical Characterization of a Hyperthermostable and Ca²⁺-independent α-Amylase of an Extreme Thermophile Geobacillus thermoleovorans</title><title>Applied biochemistry and biotechnology</title><addtitle>Appl Biochem Biotechnol</addtitle><addtitle>Appl Biochem Biotechnol</addtitle><description>α-Amylases reported from various microbial sources have been shown to be moderately thermostable and Ca²⁺ dependent. The bacterial strain used in this investigation is an extremely thermophilic bacterium Geobacillus thermoleovorans that produces a novel α-amylase (26 kDa; α-amylase gt), which is hyperthermostable (T(opt) 100 °C) and does not require Ca²⁺ for its activity/stability. These special features of α-amylase gt make it applicable in starch saccharification process. The structural aspects of α-amylase gt are, therefore, of significant interest to understand its structure-function relationship. The circular dichroism spectroscopic data revealed the native α-amylase gt to contain 25% α-helix, 21% β-sheet, and 54% random coils. The addition of urea, at high concentration (8 M), appeared to expose the buried Trp residues of the native α-amylase gt to the aqueous environment and thus showed low fluorophore. Fluorescence-quenching experiments using KI, CsCl, N-bromosuccinimide, and acrylamide revealed interesting features of the tryptophan microenvironment. Analysis of K(sv) and f(a) values of KI, CsCl, and acrylamide suggested the overall Trp microenvironment in α-amylase to be slightly electropositive. Fluorescence-quenching studies with acrylamide revealed the occurrence of both collisional as well as static quenching processes. There was no change in the α-helix content or the enzyme activity with an increase in temperature (60-100 °C) that suggested a critical role of the α-helix content in maintaining the catalytic activity.</description><subject>alpha-amylase</subject><subject>alpha-Amylases - metabolism</subject><subject>Bacillaceae - enzymology</subject><subject>Bacillaceae - genetics</subject><subject>Bacillaceae - metabolism</subject><subject>Bacillus thermoleovorans</subject><subject>Biochemistry</subject><subject>Biological and medical sciences</subject><subject>biophysics</subject><subject>Biotechnology</subject><subject>calcium</subject><subject>Calcium - metabolism</subject><subject>Chemistry</subject><subject>Chemistry and Materials Science</subject><subject>circular dichroism spectroscopy</subject><subject>Enzyme Stability</subject><subject>fluorescence</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>saccharification</subject><subject>starch</subject><subject>strains</subject><subject>Temperature</subject><subject>thermal stability</subject><subject>thermophilic bacteria</subject><subject>tryptophan</subject><subject>urea</subject><issn>0273-2289</issn><issn>1559-0291</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kU1u1DAYhi0EokPhAGwgG9gZ_JPEybKMSotUiQXt2vrifO64SuJgJ2iGHffgErBk2QP0EJwEdzKCHRtblp_ntfy9hDzn7A1nTL2NXDDOKGMVrbjidPuArHhR1JSJmj8kKyaUpEJU9RF5EuMNY1xUhXpMjniV51Ll-Yp8f-f8uNlFZ6DLYGizdDYb7Pfn9QYCmAmD-wqT80PmbQbZ-W7EMG0w9D5O0HS499Zw-_P3t1_UDS2OmJZhyu5-0JN-10HEvTlkp9spYI_Z5d4eNy7JZ-gbMK7r5pgtqR36Lz7AEJ-SRxa6iM8O-zG5en96uT6nFx_PPqxPLqiRopxohY1sbVty3lrTtLVSeSnzGlSZW2MqaFpbWca5QVTWgpXMVqYRRQO8MLw08pi8XnLH4D_PGCfdu2iw62BAP0dd1pKXRZEnkC-gCT7GgFaPwfUQdpozfV-JXirRqRJ9X4neJufFIXxuemz_GYcOEvDqAEBMU7fp58bFv5xgRa5qViZOLFxMV8M1Bn3j5zCkwfz39ZeLZMFruA4p-OpTgiTjhSylUvIPKp61EQ</recordid><startdate>20080801</startdate><enddate>20080801</enddate><creator>Uma Maheswar Rao, J.L</creator><creator>Satyanarayana, T</creator><general>Humana Press Inc</general><general>Springer</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20080801</creationdate><title>Biophysical and Biochemical Characterization of a Hyperthermostable and Ca²⁺-independent α-Amylase of an Extreme Thermophile Geobacillus thermoleovorans</title><author>Uma Maheswar Rao, J.L ; Satyanarayana, T</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c326t-8eb3dfd611dfcbd97746349a764fcc8abdf8f011cee7ffaf30f8cb25ba15c16c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>alpha-amylase</topic><topic>alpha-Amylases - metabolism</topic><topic>Bacillaceae - enzymology</topic><topic>Bacillaceae - genetics</topic><topic>Bacillaceae - metabolism</topic><topic>Bacillus thermoleovorans</topic><topic>Biochemistry</topic><topic>Biological and medical sciences</topic><topic>biophysics</topic><topic>Biotechnology</topic><topic>calcium</topic><topic>Calcium - metabolism</topic><topic>Chemistry</topic><topic>Chemistry and Materials Science</topic><topic>circular dichroism spectroscopy</topic><topic>Enzyme Stability</topic><topic>fluorescence</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>saccharification</topic><topic>starch</topic><topic>strains</topic><topic>Temperature</topic><topic>thermal stability</topic><topic>thermophilic bacteria</topic><topic>tryptophan</topic><topic>urea</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Uma Maheswar Rao, J.L</creatorcontrib><creatorcontrib>Satyanarayana, T</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Applied biochemistry and biotechnology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Uma Maheswar Rao, J.L</au><au>Satyanarayana, T</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Biophysical and Biochemical Characterization of a Hyperthermostable and Ca²⁺-independent α-Amylase of an Extreme Thermophile Geobacillus thermoleovorans</atitle><jtitle>Applied biochemistry and biotechnology</jtitle><stitle>Appl Biochem Biotechnol</stitle><addtitle>Appl Biochem Biotechnol</addtitle><date>2008-08-01</date><risdate>2008</risdate><volume>150</volume><issue>2</issue><spage>205</spage><epage>219</epage><pages>205-219</pages><issn>0273-2289</issn><eissn>1559-0291</eissn><coden>ABIBDL</coden><abstract>α-Amylases reported from various microbial sources have been shown to be moderately thermostable and Ca²⁺ dependent. The bacterial strain used in this investigation is an extremely thermophilic bacterium Geobacillus thermoleovorans that produces a novel α-amylase (26 kDa; α-amylase gt), which is hyperthermostable (T(opt) 100 °C) and does not require Ca²⁺ for its activity/stability. These special features of α-amylase gt make it applicable in starch saccharification process. The structural aspects of α-amylase gt are, therefore, of significant interest to understand its structure-function relationship. The circular dichroism spectroscopic data revealed the native α-amylase gt to contain 25% α-helix, 21% β-sheet, and 54% random coils. The addition of urea, at high concentration (8 M), appeared to expose the buried Trp residues of the native α-amylase gt to the aqueous environment and thus showed low fluorophore. Fluorescence-quenching experiments using KI, CsCl, N-bromosuccinimide, and acrylamide revealed interesting features of the tryptophan microenvironment. Analysis of K(sv) and f(a) values of KI, CsCl, and acrylamide suggested the overall Trp microenvironment in α-amylase to be slightly electropositive. Fluorescence-quenching studies with acrylamide revealed the occurrence of both collisional as well as static quenching processes. There was no change in the α-helix content or the enzyme activity with an increase in temperature (60-100 °C) that suggested a critical role of the α-helix content in maintaining the catalytic activity.</abstract><cop>New York</cop><pub>Humana Press Inc</pub><pmid>18443744</pmid><doi>10.1007/s12010-008-8171-x</doi><tpages>15</tpages></addata></record> |
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subjects | alpha-amylase alpha-Amylases - metabolism Bacillaceae - enzymology Bacillaceae - genetics Bacillaceae - metabolism Bacillus thermoleovorans Biochemistry Biological and medical sciences biophysics Biotechnology calcium Calcium - metabolism Chemistry Chemistry and Materials Science circular dichroism spectroscopy Enzyme Stability fluorescence Fundamental and applied biological sciences. Psychology saccharification starch strains Temperature thermal stability thermophilic bacteria tryptophan urea |
title | Biophysical and Biochemical Characterization of a Hyperthermostable and Ca²⁺-independent α-Amylase of an Extreme Thermophile Geobacillus thermoleovorans |
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