Induction of Globin Synthesis in K562 Cells Is Associated with Differential Expression of Transcription Factor Genes
Globin gene switching may be mediated by proteins expressed during different stages of development. Their identification may clarify the mechanisms of the conversion from fetal to adult globin production and lead to new approaches to reversing or retarding the γ- to β-globin gene switch. To explore...
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Veröffentlicht in: | Blood cells, molecules, & diseases molecules, & diseases, 1999-06, Vol.25 (3), p.156-165 |
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description | Globin gene switching may be mediated by proteins expressed during different stages of development. Their identification may clarify the mechanisms of the conversion from fetal to adult globin production and lead to new approaches to reversing or retarding the γ- to β-globin gene switch. To explore this hypothesis, K562 erythroleukemia cells were induced to differentiate with 1.25, 2.5, and 5 mM sodium butyrate and gene expression was studied after 24, 48, and 72 h. Erythroid differentiation was verified by benzidine staining and by measuring the activity of a transduced Aγ-globin gene promoter linked to a luciferase reporter gene. Using differential display polymerase chain reaction (PCR), total mRNA extracted from induced cells at each time point of induction was reverse transcribed in the presence of A, G, and C anchored primers and 16 arbitrary primers, calculated to amplify approximately 50% of expressed genes. Amplified mRNAs from induced and uninduced cells were separated in polyacrylamide gels and compared. More than 110 cDNA fragments which appeared to represent either up- or downregulated mRNA species in induced K562 cells were identified. Sixty-four of these fragments had more than 95% homology to known GenBank sequences. Seventeen fragments with characteristics of transcription factors were cloned. These include differentiation-related gene-1 (drg-1), PAX 3/forkhead transcription factor, HZF2 which is a Kruppel-related zinc finger protein, three helix-loop-helix proteins (heir-1, Id3, and GOS8), α-NAC transcriptional coactivator, LIM domain protein, and trophoblast hypoxia regulating factor. Differential expression of all 17 fragments over 72 h was confirmed by reverse Northern dot blot analysis, semiquantitative PCR using nested primers, and Northern analysis. Erythroid maturation in induced K562 cells is associated with differential expression of numerous genes. Some encode transcription factors that could effect the initiation of HbF synthesis. Almost half of the differentially expressed clones contained cDNAs of unidentified open reading frames and these are the object of continued study. |
doi_str_mv | 10.1006/bcmd.1999.0241 |
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Their identification may clarify the mechanisms of the conversion from fetal to adult globin production and lead to new approaches to reversing or retarding the γ- to β-globin gene switch. To explore this hypothesis, K562 erythroleukemia cells were induced to differentiate with 1.25, 2.5, and 5 mM sodium butyrate and gene expression was studied after 24, 48, and 72 h. Erythroid differentiation was verified by benzidine staining and by measuring the activity of a transduced Aγ-globin gene promoter linked to a luciferase reporter gene. Using differential display polymerase chain reaction (PCR), total mRNA extracted from induced cells at each time point of induction was reverse transcribed in the presence of A, G, and C anchored primers and 16 arbitrary primers, calculated to amplify approximately 50% of expressed genes. Amplified mRNAs from induced and uninduced cells were separated in polyacrylamide gels and compared. More than 110 cDNA fragments which appeared to represent either up- or downregulated mRNA species in induced K562 cells were identified. Sixty-four of these fragments had more than 95% homology to known GenBank sequences. Seventeen fragments with characteristics of transcription factors were cloned. These include differentiation-related gene-1 (drg-1), PAX 3/forkhead transcription factor, HZF2 which is a Kruppel-related zinc finger protein, three helix-loop-helix proteins (heir-1, Id3, and GOS8), α-NAC transcriptional coactivator, LIM domain protein, and trophoblast hypoxia regulating factor. Differential expression of all 17 fragments over 72 h was confirmed by reverse Northern dot blot analysis, semiquantitative PCR using nested primers, and Northern analysis. Erythroid maturation in induced K562 cells is associated with differential expression of numerous genes. Some encode transcription factors that could effect the initiation of HbF synthesis. Almost half of the differentially expressed clones contained cDNAs of unidentified open reading frames and these are the object of continued study.</description><identifier>ISSN: 1079-9796</identifier><identifier>EISSN: 1096-0961</identifier><identifier>DOI: 10.1006/bcmd.1999.0241</identifier><identifier>PMID: 10575541</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Blotting, Northern ; DNA, Complementary - analysis ; DNA, Complementary - chemistry ; Fetal Hemoglobin - genetics ; Gene Expression Regulation ; gene transcription, fetal hemoglobin, γ,-globin gene, differential display PCR, sickle cell anemia ; Genes, Switch ; Globins - biosynthesis ; Globins - genetics ; Humans ; K562 Cells ; Leukemia, Erythroblastic, Acute - genetics ; Leukemia, Erythroblastic, Acute - pathology ; Polymerase Chain Reaction ; Promoter Regions, Genetic - genetics ; Sequence Analysis, DNA ; Sequence Analysis, RNA ; Transcription Factors - genetics</subject><ispartof>Blood cells, molecules, & diseases, 1999-06, Vol.25 (3), p.156-165</ispartof><rights>1999 Academic Press</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c340t-948a63fb9840f663a28236d819f5efd8bfcb96a10d0057c92c15a7717187fcc53</citedby><cites>FETCH-LOGICAL-c340t-948a63fb9840f663a28236d819f5efd8bfcb96a10d0057c92c15a7717187fcc53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1079979699902413$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10575541$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Plonczynski, Maria</creatorcontrib><creatorcontrib>Hardy, Cheryl L</creatorcontrib><creatorcontrib>Safaya, Surinder</creatorcontrib><creatorcontrib>Harrell, Audrey</creatorcontrib><creatorcontrib>McCoy, Lakeyra</creatorcontrib><creatorcontrib>Brinson, Alisha</creatorcontrib><creatorcontrib>Agwarangbo, Lovell</creatorcontrib><creatorcontrib>Steinberg, Martin H</creatorcontrib><title>Induction of Globin Synthesis in K562 Cells Is Associated with Differential Expression of Transcription Factor Genes</title><title>Blood cells, molecules, & diseases</title><addtitle>Blood Cells Mol Dis</addtitle><description>Globin gene switching may be mediated by proteins expressed during different stages of development. Their identification may clarify the mechanisms of the conversion from fetal to adult globin production and lead to new approaches to reversing or retarding the γ- to β-globin gene switch. To explore this hypothesis, K562 erythroleukemia cells were induced to differentiate with 1.25, 2.5, and 5 mM sodium butyrate and gene expression was studied after 24, 48, and 72 h. Erythroid differentiation was verified by benzidine staining and by measuring the activity of a transduced Aγ-globin gene promoter linked to a luciferase reporter gene. Using differential display polymerase chain reaction (PCR), total mRNA extracted from induced cells at each time point of induction was reverse transcribed in the presence of A, G, and C anchored primers and 16 arbitrary primers, calculated to amplify approximately 50% of expressed genes. Amplified mRNAs from induced and uninduced cells were separated in polyacrylamide gels and compared. More than 110 cDNA fragments which appeared to represent either up- or downregulated mRNA species in induced K562 cells were identified. Sixty-four of these fragments had more than 95% homology to known GenBank sequences. Seventeen fragments with characteristics of transcription factors were cloned. These include differentiation-related gene-1 (drg-1), PAX 3/forkhead transcription factor, HZF2 which is a Kruppel-related zinc finger protein, three helix-loop-helix proteins (heir-1, Id3, and GOS8), α-NAC transcriptional coactivator, LIM domain protein, and trophoblast hypoxia regulating factor. Differential expression of all 17 fragments over 72 h was confirmed by reverse Northern dot blot analysis, semiquantitative PCR using nested primers, and Northern analysis. Erythroid maturation in induced K562 cells is associated with differential expression of numerous genes. Some encode transcription factors that could effect the initiation of HbF synthesis. Almost half of the differentially expressed clones contained cDNAs of unidentified open reading frames and these are the object of continued study.</description><subject>Blotting, Northern</subject><subject>DNA, Complementary - analysis</subject><subject>DNA, Complementary - chemistry</subject><subject>Fetal Hemoglobin - genetics</subject><subject>Gene Expression Regulation</subject><subject>gene transcription, fetal hemoglobin, γ,-globin gene, differential display PCR, sickle cell anemia</subject><subject>Genes, Switch</subject><subject>Globins - biosynthesis</subject><subject>Globins - genetics</subject><subject>Humans</subject><subject>K562 Cells</subject><subject>Leukemia, Erythroblastic, Acute - genetics</subject><subject>Leukemia, Erythroblastic, Acute - pathology</subject><subject>Polymerase Chain Reaction</subject><subject>Promoter Regions, Genetic - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Analysis, RNA</subject><subject>Transcription Factors - genetics</subject><issn>1079-9796</issn><issn>1096-0961</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1999</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kD1v2zAQhomiReKmWTsWnLLJJfVBiaPh2K6RAB3qzgRFHhEWMuny6Cb-95FiD1k6EMcDnnuB9yHkK2dzzpj43pu9nXMp5ZyVNf9AZpxJUYyPf5z-rSxkK8U1-Yz4hzHGueyuyDVnTds0NZ-RvA32aLKPgUZHN0PsfaC_TiE_AXqk4_LQiJIuYRiQbpEuEKPxOoOlzz4_0XvvHCQI2euBrl4OCRAvYbukA5rkD2_pa21yTHQDAfAL-eT0gHB7mTfk93q1W_4oHn9utsvFY2GqmuVC1p0WletlVzMnRKXLrqyE7bh0DTjb9c70UmjOLBv7GFka3ui25S3vWmdMU92Qu3PuIcW_R8Cs9h7NWEUHiEdUQlasbqQYwfkZNCkiJnDqkPxep5PiTE2e1eRZTZ7V5Hk8-HZJPvZ7sO_ws9gR6M4AjP3-eUgKjYdgwPoEJisb_f-yXwErpYyu</recordid><startdate>199906</startdate><enddate>199906</enddate><creator>Plonczynski, Maria</creator><creator>Hardy, Cheryl L</creator><creator>Safaya, Surinder</creator><creator>Harrell, Audrey</creator><creator>McCoy, Lakeyra</creator><creator>Brinson, Alisha</creator><creator>Agwarangbo, Lovell</creator><creator>Steinberg, Martin H</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>199906</creationdate><title>Induction of Globin Synthesis in K562 Cells Is Associated with Differential Expression of Transcription Factor Genes</title><author>Plonczynski, Maria ; Hardy, Cheryl L ; Safaya, Surinder ; Harrell, Audrey ; McCoy, Lakeyra ; Brinson, Alisha ; Agwarangbo, Lovell ; Steinberg, Martin H</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c340t-948a63fb9840f663a28236d819f5efd8bfcb96a10d0057c92c15a7717187fcc53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1999</creationdate><topic>Blotting, Northern</topic><topic>DNA, Complementary - analysis</topic><topic>DNA, Complementary - chemistry</topic><topic>Fetal Hemoglobin - genetics</topic><topic>Gene Expression Regulation</topic><topic>gene transcription, fetal hemoglobin, γ,-globin gene, differential display PCR, sickle cell anemia</topic><topic>Genes, Switch</topic><topic>Globins - biosynthesis</topic><topic>Globins - genetics</topic><topic>Humans</topic><topic>K562 Cells</topic><topic>Leukemia, Erythroblastic, Acute - genetics</topic><topic>Leukemia, Erythroblastic, Acute - pathology</topic><topic>Polymerase Chain Reaction</topic><topic>Promoter Regions, Genetic - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Analysis, RNA</topic><topic>Transcription Factors - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Plonczynski, Maria</creatorcontrib><creatorcontrib>Hardy, Cheryl L</creatorcontrib><creatorcontrib>Safaya, Surinder</creatorcontrib><creatorcontrib>Harrell, Audrey</creatorcontrib><creatorcontrib>McCoy, Lakeyra</creatorcontrib><creatorcontrib>Brinson, Alisha</creatorcontrib><creatorcontrib>Agwarangbo, Lovell</creatorcontrib><creatorcontrib>Steinberg, Martin H</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Blood cells, molecules, & diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Plonczynski, Maria</au><au>Hardy, Cheryl L</au><au>Safaya, Surinder</au><au>Harrell, Audrey</au><au>McCoy, Lakeyra</au><au>Brinson, Alisha</au><au>Agwarangbo, Lovell</au><au>Steinberg, Martin H</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Induction of Globin Synthesis in K562 Cells Is Associated with Differential Expression of Transcription Factor Genes</atitle><jtitle>Blood cells, molecules, & diseases</jtitle><addtitle>Blood Cells Mol Dis</addtitle><date>1999-06</date><risdate>1999</risdate><volume>25</volume><issue>3</issue><spage>156</spage><epage>165</epage><pages>156-165</pages><issn>1079-9796</issn><eissn>1096-0961</eissn><abstract>Globin gene switching may be mediated by proteins expressed during different stages of development. Their identification may clarify the mechanisms of the conversion from fetal to adult globin production and lead to new approaches to reversing or retarding the γ- to β-globin gene switch. To explore this hypothesis, K562 erythroleukemia cells were induced to differentiate with 1.25, 2.5, and 5 mM sodium butyrate and gene expression was studied after 24, 48, and 72 h. Erythroid differentiation was verified by benzidine staining and by measuring the activity of a transduced Aγ-globin gene promoter linked to a luciferase reporter gene. Using differential display polymerase chain reaction (PCR), total mRNA extracted from induced cells at each time point of induction was reverse transcribed in the presence of A, G, and C anchored primers and 16 arbitrary primers, calculated to amplify approximately 50% of expressed genes. Amplified mRNAs from induced and uninduced cells were separated in polyacrylamide gels and compared. More than 110 cDNA fragments which appeared to represent either up- or downregulated mRNA species in induced K562 cells were identified. Sixty-four of these fragments had more than 95% homology to known GenBank sequences. Seventeen fragments with characteristics of transcription factors were cloned. These include differentiation-related gene-1 (drg-1), PAX 3/forkhead transcription factor, HZF2 which is a Kruppel-related zinc finger protein, three helix-loop-helix proteins (heir-1, Id3, and GOS8), α-NAC transcriptional coactivator, LIM domain protein, and trophoblast hypoxia regulating factor. Differential expression of all 17 fragments over 72 h was confirmed by reverse Northern dot blot analysis, semiquantitative PCR using nested primers, and Northern analysis. Erythroid maturation in induced K562 cells is associated with differential expression of numerous genes. Some encode transcription factors that could effect the initiation of HbF synthesis. Almost half of the differentially expressed clones contained cDNAs of unidentified open reading frames and these are the object of continued study.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>10575541</pmid><doi>10.1006/bcmd.1999.0241</doi><tpages>10</tpages></addata></record> |
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subjects | Blotting, Northern DNA, Complementary - analysis DNA, Complementary - chemistry Fetal Hemoglobin - genetics Gene Expression Regulation gene transcription, fetal hemoglobin, γ,-globin gene, differential display PCR, sickle cell anemia Genes, Switch Globins - biosynthesis Globins - genetics Humans K562 Cells Leukemia, Erythroblastic, Acute - genetics Leukemia, Erythroblastic, Acute - pathology Polymerase Chain Reaction Promoter Regions, Genetic - genetics Sequence Analysis, DNA Sequence Analysis, RNA Transcription Factors - genetics |
title | Induction of Globin Synthesis in K562 Cells Is Associated with Differential Expression of Transcription Factor Genes |
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