high-density intervarietal map of the wheat genome enriched with markers derived from expressed sequence tags
Bread wheat (Triticum aestivum L.) is a hexaploid species with a large and complex genome. A reference genetic marker map, namely the International Triticeae Mapping Initiative (ITMI) map, has been constructed with the recombinant inbred line population derived from a cross involving a synthetic lin...
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| Veröffentlicht in: | Theoretical and applied genetics 2008-07, Vol.117 (2), p.181-189 |
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| creator | Xue, Shulin Zhang, Zhengzhi Lin, Feng Kong, Zhongxin Cao, Yong Li, Chunjun Yi, Hongying Mei, Mingfeng Zhu, Huilan Wu, Jizhong Xu, Haibin Zhao, Dongmei Tian, Dagang Zhang, Caiqin Ma, Zhengqiang |
| description | Bread wheat (Triticum aestivum L.) is a hexaploid species with a large and complex genome. A reference genetic marker map, namely the International Triticeae Mapping Initiative (ITMI) map, has been constructed with the recombinant inbred line population derived from a cross involving a synthetic line. But it is not sufficient for a full understanding of the wheat genome under artificial selection without comparing it with intervarietal maps. Using an intervarietal mapping population derived by crossing Nanda2419 and Wangshuibai, we constructed a high-density genetic map of wheat. The total map length was 4,223.1 cM, comprising 887 loci, 345 of which were detected by markers derived from expressed sequence tags (ESTs). Two-thirds of the high marker density blocks were present in interstitial and telomeric regions. The map covered, mostly with the EST-derived markers, approximately 158 cM of telomeric regions absent in the ITMI map. The regions of low marker density were largely conserved among cultivars and between homoeologous subgenomes. The loci showing skewed segregation displayed a clustered distribution along chromosomes and some of the segregation distortion regions (SDR) are conserved in different mapping populations. This map enriched with EST-derived markers is important for structure and function analysis of wheat genome as well as in wheat gene mapping, cloning, and breeding programs. |
| doi_str_mv | 10.1007/s00122-008-0764-9 |
| format | Article |
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A reference genetic marker map, namely the International Triticeae Mapping Initiative (ITMI) map, has been constructed with the recombinant inbred line population derived from a cross involving a synthetic line. But it is not sufficient for a full understanding of the wheat genome under artificial selection without comparing it with intervarietal maps. Using an intervarietal mapping population derived by crossing Nanda2419 and Wangshuibai, we constructed a high-density genetic map of wheat. The total map length was 4,223.1 cM, comprising 887 loci, 345 of which were detected by markers derived from expressed sequence tags (ESTs). Two-thirds of the high marker density blocks were present in interstitial and telomeric regions. The map covered, mostly with the EST-derived markers, approximately 158 cM of telomeric regions absent in the ITMI map. The regions of low marker density were largely conserved among cultivars and between homoeologous subgenomes. The loci showing skewed segregation displayed a clustered distribution along chromosomes and some of the segregation distortion regions (SDR) are conserved in different mapping populations. This map enriched with EST-derived markers is important for structure and function analysis of wheat genome as well as in wheat gene mapping, cloning, and breeding programs.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-008-0764-9</identifier><identifier>PMID: 18437345</identifier><identifier>CODEN: THAGA6</identifier><language>eng</language><publisher>Berlin/Heidelberg: Berlin/Heidelberg : Springer-Verlag</publisher><subject>Agriculture ; Biochemistry ; Biological and medical sciences ; Biomedical and Life Sciences ; Biotechnology ; Chromosome Mapping ; Chromosome Segregation ; Chromosomes ; Chromosomes, Plant - metabolism ; Classical genetics, quantitative genetics, hybrids ; DNA, Plant - metabolism ; Expressed Sequence Tags ; Fundamental and applied biological sciences. Psychology ; Genetic Markers ; Genetics of eukaryotes. Biological and molecular evolution ; Genome, Plant - genetics ; Genomes ; Genomics ; Life Sciences ; Original Paper ; Plant Biochemistry ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Polymorphism ; Polymorphism, Genetic ; Pteridophyta, spermatophyta ; Signal transduction ; Triticum - genetics ; Vegetals</subject><ispartof>Theoretical and applied genetics, 2008-07, Vol.117 (2), p.181-189</ispartof><rights>Springer-Verlag 2008</rights><rights>2008 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c423t-b005469c46b666f3c4c56378eba6e99c83fba4c3753b146ffa9acc7a692768263</citedby><cites>FETCH-LOGICAL-c423t-b005469c46b666f3c4c56378eba6e99c83fba4c3753b146ffa9acc7a692768263</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00122-008-0764-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00122-008-0764-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=20488116$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18437345$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xue, Shulin</creatorcontrib><creatorcontrib>Zhang, Zhengzhi</creatorcontrib><creatorcontrib>Lin, Feng</creatorcontrib><creatorcontrib>Kong, Zhongxin</creatorcontrib><creatorcontrib>Cao, Yong</creatorcontrib><creatorcontrib>Li, Chunjun</creatorcontrib><creatorcontrib>Yi, Hongying</creatorcontrib><creatorcontrib>Mei, Mingfeng</creatorcontrib><creatorcontrib>Zhu, Huilan</creatorcontrib><creatorcontrib>Wu, Jizhong</creatorcontrib><creatorcontrib>Xu, Haibin</creatorcontrib><creatorcontrib>Zhao, Dongmei</creatorcontrib><creatorcontrib>Tian, Dagang</creatorcontrib><creatorcontrib>Zhang, Caiqin</creatorcontrib><creatorcontrib>Ma, Zhengqiang</creatorcontrib><title>high-density intervarietal map of the wheat genome enriched with markers derived from expressed sequence tags</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><addtitle>Theor Appl Genet</addtitle><description>Bread wheat (Triticum aestivum L.) is a hexaploid species with a large and complex genome. A reference genetic marker map, namely the International Triticeae Mapping Initiative (ITMI) map, has been constructed with the recombinant inbred line population derived from a cross involving a synthetic line. But it is not sufficient for a full understanding of the wheat genome under artificial selection without comparing it with intervarietal maps. Using an intervarietal mapping population derived by crossing Nanda2419 and Wangshuibai, we constructed a high-density genetic map of wheat. The total map length was 4,223.1 cM, comprising 887 loci, 345 of which were detected by markers derived from expressed sequence tags (ESTs). Two-thirds of the high marker density blocks were present in interstitial and telomeric regions. The map covered, mostly with the EST-derived markers, approximately 158 cM of telomeric regions absent in the ITMI map. The regions of low marker density were largely conserved among cultivars and between homoeologous subgenomes. The loci showing skewed segregation displayed a clustered distribution along chromosomes and some of the segregation distortion regions (SDR) are conserved in different mapping populations. This map enriched with EST-derived markers is important for structure and function analysis of wheat genome as well as in wheat gene mapping, cloning, and breeding programs.</description><subject>Agriculture</subject><subject>Biochemistry</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Chromosome Mapping</subject><subject>Chromosome Segregation</subject><subject>Chromosomes</subject><subject>Chromosomes, Plant - metabolism</subject><subject>Classical genetics, quantitative genetics, hybrids</subject><subject>DNA, Plant - metabolism</subject><subject>Expressed Sequence Tags</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetic Markers</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>Genome, Plant - genetics</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Life Sciences</subject><subject>Original Paper</subject><subject>Plant Biochemistry</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Genetics and Genomics</subject><subject>Polymorphism</subject><subject>Polymorphism, Genetic</subject><subject>Pteridophyta, spermatophyta</subject><subject>Signal transduction</subject><subject>Triticum - genetics</subject><subject>Vegetals</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kU9v1DAQxS0EotuFD8AFLCS4BcZ_YifHqoKCVIkD9Gw53nHikjiLnW3pt8errKjEgZNl-_fmzcwj5BWDDwxAf8wAjPMKoKlAK1m1T8iGScErziV_SjYAEqpa1_yMnOd8CwC8BvGcnLFGCi1kvSHTEPqh2mHMYXmgIS6Y7mwKuNiRTnZPZ0-XAen9gHahPcZ5QooxBTfgjt6HZShU-okp0x2mcFcefZonir_3CXMu14y_Dhgd0sX2-QV55u2Y8eXp3JKbz59-XH6prr9dfb28uK6c5GKpOoBaqtZJ1SmlvHDS1UroBjursG1dI3xnpRO6Fh2TynvbWue0VS3XquFKbMn7te4-zcU-L2YK2eE42ojzIZsCyvYo35K3_4C38yHF0pvhIGuQZa0FYivk0pxzQm_2KZSxHwwDcwzCrEGYEoQ5BmHaonl9KnzoJtw9Kk6bL8C7E2Czs6NPNrqQ_3LFvWkYO47CVy6Xr9hjeuzwf-5vVpG3s7F9KoVvvnNgAqAtEqbFHzjDqeA</recordid><startdate>20080701</startdate><enddate>20080701</enddate><creator>Xue, Shulin</creator><creator>Zhang, Zhengzhi</creator><creator>Lin, Feng</creator><creator>Kong, Zhongxin</creator><creator>Cao, Yong</creator><creator>Li, Chunjun</creator><creator>Yi, Hongying</creator><creator>Mei, Mingfeng</creator><creator>Zhu, Huilan</creator><creator>Wu, Jizhong</creator><creator>Xu, Haibin</creator><creator>Zhao, Dongmei</creator><creator>Tian, Dagang</creator><creator>Zhang, Caiqin</creator><creator>Ma, Zhengqiang</creator><general>Berlin/Heidelberg : Springer-Verlag</general><general>Springer-Verlag</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20080701</creationdate><title>high-density intervarietal map of the wheat genome enriched with markers derived from expressed sequence tags</title><author>Xue, Shulin ; Zhang, Zhengzhi ; Lin, Feng ; Kong, Zhongxin ; Cao, Yong ; Li, Chunjun ; Yi, Hongying ; Mei, Mingfeng ; Zhu, Huilan ; Wu, Jizhong ; Xu, Haibin ; Zhao, Dongmei ; Tian, Dagang ; Zhang, Caiqin ; Ma, Zhengqiang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c423t-b005469c46b666f3c4c56378eba6e99c83fba4c3753b146ffa9acc7a692768263</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Agriculture</topic><topic>Biochemistry</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Chromosome Mapping</topic><topic>Chromosome Segregation</topic><topic>Chromosomes</topic><topic>Chromosomes, Plant - metabolism</topic><topic>Classical genetics, quantitative genetics, hybrids</topic><topic>DNA, Plant - metabolism</topic><topic>Expressed Sequence Tags</topic><topic>Fundamental and applied biological sciences. 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A reference genetic marker map, namely the International Triticeae Mapping Initiative (ITMI) map, has been constructed with the recombinant inbred line population derived from a cross involving a synthetic line. But it is not sufficient for a full understanding of the wheat genome under artificial selection without comparing it with intervarietal maps. Using an intervarietal mapping population derived by crossing Nanda2419 and Wangshuibai, we constructed a high-density genetic map of wheat. The total map length was 4,223.1 cM, comprising 887 loci, 345 of which were detected by markers derived from expressed sequence tags (ESTs). Two-thirds of the high marker density blocks were present in interstitial and telomeric regions. The map covered, mostly with the EST-derived markers, approximately 158 cM of telomeric regions absent in the ITMI map. The regions of low marker density were largely conserved among cultivars and between homoeologous subgenomes. The loci showing skewed segregation displayed a clustered distribution along chromosomes and some of the segregation distortion regions (SDR) are conserved in different mapping populations. This map enriched with EST-derived markers is important for structure and function analysis of wheat genome as well as in wheat gene mapping, cloning, and breeding programs.</abstract><cop>Berlin/Heidelberg</cop><pub>Berlin/Heidelberg : Springer-Verlag</pub><pmid>18437345</pmid><doi>10.1007/s00122-008-0764-9</doi><tpages>9</tpages></addata></record> |
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| subjects | Agriculture Biochemistry Biological and medical sciences Biomedical and Life Sciences Biotechnology Chromosome Mapping Chromosome Segregation Chromosomes Chromosomes, Plant - metabolism Classical genetics, quantitative genetics, hybrids DNA, Plant - metabolism Expressed Sequence Tags Fundamental and applied biological sciences. Psychology Genetic Markers Genetics of eukaryotes. Biological and molecular evolution Genome, Plant - genetics Genomes Genomics Life Sciences Original Paper Plant Biochemistry Plant Breeding/Biotechnology Plant Genetics and Genomics Polymorphism Polymorphism, Genetic Pteridophyta, spermatophyta Signal transduction Triticum - genetics Vegetals |
| title | high-density intervarietal map of the wheat genome enriched with markers derived from expressed sequence tags |
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