Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy

Bacteriohopanoids are widespread lipid biomarkers in the sedimentary record. Many aerobic and anaerobic bacteria are potential sources of these lipids which sometimes complicates the use of these biomarkers as proxies for ecological and environmental changes. Therefore, we applied preserved 16S ribo...

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Veröffentlicht in:Environmental microbiology 2008-07, Vol.10 (7), p.1783-1803
Hauptverfasser: Coolen, Marco J.L, Talbot, Helen M, Abbas, Ben A, Ward, Christopher, Schouten, Stefan, Volkman, John K, Damsté, Jaap S. Sinninghe
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container_end_page 1803
container_issue 7
container_start_page 1783
container_title Environmental microbiology
container_volume 10
creator Coolen, Marco J.L
Talbot, Helen M
Abbas, Ben A
Ward, Christopher
Schouten, Stefan
Volkman, John K
Damsté, Jaap S. Sinninghe
description Bacteriohopanoids are widespread lipid biomarkers in the sedimentary record. Many aerobic and anaerobic bacteria are potential sources of these lipids which sometimes complicates the use of these biomarkers as proxies for ecological and environmental changes. Therefore, we applied preserved 16S ribosomal RNA genes to identify likely Holocene biological sources of bacteriohopanepolyols (BHPs) in the sulfidic sediments of the permanently stratified postglacial Ace Lake, Antarctica. A suite of intact BHPs were identified, which revealed a variety of structural forms whose composition differed through the sediment core reflecting changes in bacterial populations induced by large changes in lake salinity. Stable isotopic compositions of the hopanols formed from periodic acid-cleaved BHPs, showed that some were substantially depleted in ¹³C, indicative of their methanotrophic origin. Using sensitive molecular tools, we found that Type I and II methanotrophic bacteria (respectively Methylomonas and Methylocystis) were unique to the oldest lacustrine sediments (> 9400 years BP), but quantification of fossil DNA revealed that the Type I methanotrophs, including methanotrophs related to methanotrophic gill symbionts of deep-sea cold-seep mussels, were the main precursors of the 35-amino BHPs (i.e. aminopentol, -tetrol and -triols). After isolation of the lake ~3000 years ago, one Type I methanotroph of the 'methanotrophic gill symbionts cluster' remained the most obvious source of aminotetrol and -triol. We, furthermore, identified a Synechococcus phylotype related to pelagic freshwater strains in the oldest lacustrine sediments as a putative source of 2-methylbacteriohopanetetrol (2-Me BHT). This combined application of advanced geochemical and paleogenomical tools further refined our knowledge about Holocene biogeochemical processes in Ace Lake.
doi_str_mv 10.1111/j.1462-2920.2008.01601.x
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Sinninghe</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy</atitle><jtitle>Environmental microbiology</jtitle><addtitle>Environ Microbiol</addtitle><date>2008-07</date><risdate>2008</risdate><volume>10</volume><issue>7</issue><spage>1783</spage><epage>1803</epage><pages>1783-1803</pages><issn>1462-2912</issn><eissn>1462-2920</eissn><abstract>Bacteriohopanoids are widespread lipid biomarkers in the sedimentary record. Many aerobic and anaerobic bacteria are potential sources of these lipids which sometimes complicates the use of these biomarkers as proxies for ecological and environmental changes. Therefore, we applied preserved 16S ribosomal RNA genes to identify likely Holocene biological sources of bacteriohopanepolyols (BHPs) in the sulfidic sediments of the permanently stratified postglacial Ace Lake, Antarctica. 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subjects Bacteria
DNA, Bacterial - genetics
DNA, Ribosomal - genetics
Fresh Water - microbiology
Geologic Sediments - microbiology
Methylococcaceae - classification
Methylococcaceae - genetics
Methylococcaceae - isolation & purification
Molecular Sequence Data
Phylogeny
RNA, Ribosomal, 16S - analysis
RNA, Ribosomal, 16S - genetics
title Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy
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