A complete full-length non-LTR retrotransposon, BMC1, on the W chromosome of the silkworm, Bombyx mori
In the silkworm, Bombyx mori, a non-long terminal repeat (non-LTR) retrotransposon, BMC1, is considered to be a LINE (long interspersed nuclear element)-like element. So far, a BMC1 containing two intact open reading frames (ORFs) has not been found. However, we discovered a complete full-length BMC...
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| Veröffentlicht in: | Genes & Genetic Systems 1998, Vol.73(6), pp.353-358 |
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| container_title | Genes & Genetic Systems |
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| creator | Abe, H. (Tokyo Univ. of Agriculture and Technology, Fuchu (Japan). Faculty of Agriculture) Ohbayashi, F Shimada, T Sugasaki, T Kawai, S Oshiki, T |
| description | In the silkworm, Bombyx mori, a non-long terminal repeat (non-LTR) retrotransposon, BMC1, is considered to be a LINE (long interspersed nuclear element)-like element. So far, a BMC1 containing two intact open reading frames (ORFs) has not been found. However, we discovered a complete full-length BMC1 on the W chromosome. This BMC1 is 5091 bp and contains a 5' untranslated region (5'-UTR), two intact ORFs, and 3'-UTR which terminates in a poly(A) tail. ORF1 encodes a putative nucleic acid-binding protein, while ORF2 encodes a protein containing an endonuclease domain and a reverse transcriptase domain. |
| doi_str_mv | 10.1266/ggs.73.353 |
| format | Article |
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(Tokyo Univ. of Agriculture and Technology, Fuchu (Japan). Faculty of Agriculture) ; Ohbayashi, F ; Shimada, T ; Sugasaki, T ; Kawai, S ; Oshiki, T</creator><creatorcontrib>Abe, H. (Tokyo Univ. of Agriculture and Technology, Fuchu (Japan). Faculty of Agriculture) ; Ohbayashi, F ; Shimada, T ; Sugasaki, T ; Kawai, S ; Oshiki, T ; The University of Tokyo ; Faculty of Agriculture ; Graduate School of Agricultural and Life Sciences ; Department of Biological Production ; Tokyo University of Agriculture and Technology</creatorcontrib><description>In the silkworm, Bombyx mori, a non-long terminal repeat (non-LTR) retrotransposon, BMC1, is considered to be a LINE (long interspersed nuclear element)-like element. So far, a BMC1 containing two intact open reading frames (ORFs) has not been found. However, we discovered a complete full-length BMC1 on the W chromosome. This BMC1 is 5091 bp and contains a 5' untranslated region (5'-UTR), two intact ORFs, and 3'-UTR which terminates in a poly(A) tail. ORF1 encodes a putative nucleic acid-binding protein, while ORF2 encodes a protein containing an endonuclease domain and a reverse transcriptase domain.</description><identifier>ISSN: 1341-7568</identifier><identifier>EISSN: 1880-5779</identifier><identifier>DOI: 10.1266/ggs.73.353</identifier><identifier>PMID: 10333566</identifier><language>eng</language><publisher>Japan: The Genetics Society of Japan</publisher><subject>Amino Acid Sequence ; Animals ; Base Sequence ; Bombyx - genetics ; BOMBYX MORI ; CHROMOSOME ; CHROMOSOMES ; Cloning, Molecular ; CROMOSOMAS ; Female ; GENE ; GENES ; Genes, Insect ; Molecular Sequence Data ; Retroelements ; Sequence Analysis, DNA ; Terminal Repeat Sequences</subject><ispartof>Genes & Genetic Systems, 1998, Vol.73(6), pp.353-358</ispartof><rights>1998 by The Genetics Society of Japan</rights><rights>Copyright Japan Science and Technology Agency 1998</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c667t-33f9ce0aef618d87a2427e45e0e852fc32610ca81296537ef5c2a37ee472c21f3</citedby><cites>FETCH-LOGICAL-c667t-33f9ce0aef618d87a2427e45e0e852fc32610ca81296537ef5c2a37ee472c21f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,782,786,1885,27931,27932</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10333566$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Abe, H. 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Syst.</addtitle><description>In the silkworm, Bombyx mori, a non-long terminal repeat (non-LTR) retrotransposon, BMC1, is considered to be a LINE (long interspersed nuclear element)-like element. So far, a BMC1 containing two intact open reading frames (ORFs) has not been found. However, we discovered a complete full-length BMC1 on the W chromosome. This BMC1 is 5091 bp and contains a 5' untranslated region (5'-UTR), two intact ORFs, and 3'-UTR which terminates in a poly(A) tail. ORF1 encodes a putative nucleic acid-binding protein, while ORF2 encodes a protein containing an endonuclease domain and a reverse transcriptase domain.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>Bombyx - genetics</subject><subject>BOMBYX MORI</subject><subject>CHROMOSOME</subject><subject>CHROMOSOMES</subject><subject>Cloning, Molecular</subject><subject>CROMOSOMAS</subject><subject>Female</subject><subject>GENE</subject><subject>GENES</subject><subject>Genes, Insect</subject><subject>Molecular Sequence Data</subject><subject>Retroelements</subject><subject>Sequence Analysis, DNA</subject><subject>Terminal Repeat Sequences</subject><issn>1341-7568</issn><issn>1880-5779</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1v1DAQxSMEoqVw4Q6yhMQBNYs_Ets5obKifGgRCBVxtFx3vJvFsRc7Eex_zyxpAXHh4rE8P7_37Kmqh4wuGJfy-XpdFkosRCtuVcdMa1q3SnW3cS8aVqtW6qPqXilbSjnttLhbHTEqhGilPK78GXFp2AUYgfgphDpAXI8bElOsVxefSIYxpzHbWHappHhKXr5fslOSIhk3QL4Qt8lpwM4AJPlfZ6UPX7-nPCCahsv9DzKk3N-v7ngbCjy4rifV5_NXF8s39erD67fLs1XtpFRjLYTvHFALXjJ9pZXlDVfQtEBBt9w7wSWjzmrGO9kKBb513GKFRnHHmRcn1dNZd5fTtwnKaIa-OAjBRkhTMbLjVDBF_wsyxRvNJEfwyT_gNk054iMMa2SD_8iZRurZTLmcSsngzS73g817w6g5DMngkIwSBoeE8ONryelygKu_0HkqCJzPAHZ7Z0OKoY_wx9htBMrtMUHXaUOpElRiaQxF-cOiMVXTHcK_mIW2ZbRr-O1k89i7ADeh5LwcLt903MZmAxEVHs0K3iZj17kv5t1HtO3QlUkmfgJjY8Dk</recordid><startdate>19981201</startdate><enddate>19981201</enddate><creator>Abe, H. 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(Tokyo Univ. of Agriculture and Technology, Fuchu (Japan). Faculty of Agriculture)</au><au>Ohbayashi, F</au><au>Shimada, T</au><au>Sugasaki, T</au><au>Kawai, S</au><au>Oshiki, T</au><aucorp>The University of Tokyo</aucorp><aucorp>Faculty of Agriculture</aucorp><aucorp>Graduate School of Agricultural and Life Sciences</aucorp><aucorp>Department of Biological Production</aucorp><aucorp>Tokyo University of Agriculture and Technology</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A complete full-length non-LTR retrotransposon, BMC1, on the W chromosome of the silkworm, Bombyx mori</atitle><jtitle>Genes & Genetic Systems</jtitle><addtitle>Genes Genet. 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| identifier | ISSN: 1341-7568 |
| ispartof | Genes & Genetic Systems, 1998, Vol.73(6), pp.353-358 |
| issn | 1341-7568 1880-5779 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_69203170 |
| source | MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; J-STAGE (Japan Science & Technology Information Aggregator, Electronic) Freely Available Titles - Japanese |
| subjects | Amino Acid Sequence Animals Base Sequence Bombyx - genetics BOMBYX MORI CHROMOSOME CHROMOSOMES Cloning, Molecular CROMOSOMAS Female GENE GENES Genes, Insect Molecular Sequence Data Retroelements Sequence Analysis, DNA Terminal Repeat Sequences |
| title | A complete full-length non-LTR retrotransposon, BMC1, on the W chromosome of the silkworm, Bombyx mori |
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