Reproducibility of mtDNA analysis between laboratories: a report of the European DNA profiling group (EDNAP)
The aim of this collaborative exercise was to determine whether uniformity of mtDNA sequencing results could be achieved among different EDNAP laboratories. Laboratories were asked to sequence mtDNAHV1 region (16024–16365) from three bloodstains, proceeding in accordance with the protocol and strate...
Gespeichert in:
Veröffentlicht in: | Forensic science international 1998-11, Vol.97 (2), p.165-170 |
---|---|
Hauptverfasser: | , , , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 170 |
---|---|
container_issue | 2 |
container_start_page | 165 |
container_title | Forensic science international |
container_volume | 97 |
creator | Carracedo, A D'Aloja, E Dupuy, B Jangblad, A Karjalainen, M Lambert, C Parson, W Pfeiffer, H Pfitzinger, H Sabatier, M Syndercombe Court, D Vide, C |
description | The aim of this collaborative exercise was to determine whether uniformity of mtDNA sequencing results could be achieved among different EDNAP laboratories. Laboratories were asked to sequence mtDNAHV1 region (16024–16365) from three bloodstains, proceeding in accordance with the protocol and strategies currently used in each individual laboratory. Cycle sequencing was used by 11 laboratories and solid phase single stranded sequencing was used by one laboratory. Different PCR strategies and PCR conditions were used by the different laboratories. Three laboratories used semi-nested PCR, two nested PCR, three direct amplification of HV1 and four amplification of overlapping fragments covering the HV1 region. Despite the diversity of methodologies used, all the laboratories reported the same results. The successful result of this exercise shows that PCR based mtDNA typing by automated sequencing is a valid, robust and reliable means of forensic identification despite the different strategies and methodologies used by the different laboratories. |
doi_str_mv | 10.1016/S0379-0738(98)00154-6 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_69116855</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0379073898001546</els_id><sourcerecordid>69116855</sourcerecordid><originalsourceid>FETCH-LOGICAL-c530t-1d27b19c19a090fee69d28ff773acab67ad0ddbfb24714b827f9d707675c68973</originalsourceid><addsrcrecordid>eNqFkdtrFTEQxoMo9Vj9EwoBpbQPq8lecvGllPZ4gWKLl-eQTSY1Zc9mTbKW89-b7TlU8MWngZnf9zHzDUJHlLylhLJ330jDZUV4I06kOCWEdm3FnqAVFbyuWC2ap2j1iDxHL1K6I4R0Xc0O0IEUnErZrdDwFaYY7Gx87weftzg4vMmXX86xHvWwTT7hHvI9wIgH3Yeoc4ge0nuscYQpxLwI8k_A6zmGCfSIF22xdMVuvMW3McwTPlmX7s3pS_TM6SHBq309RD8-rL9ffKqurj9-vji_qkzXkFxRW_OeSkOlJpI4ACZtLZzjvNFG94xrS6ztXV-3nLa9qLmTlhPOeGeYkLw5RMc737LHrxlSVhufDAyDHiHMSTFJKRNdV8DX_4B3YY7l8KRqWSItOUtWqG5HmRhSiuDUFP1Gx62iRC2MeviFWoJWUqiHX6hFd7R3n_sN2EfVPvwyf7Of62T04KIejU9_zVkj6rYt2NkOgxLZbw9RJeNhNGB9BJOVDf4_i_wBlwekyA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2900101696</pqid></control><display><type>article</type><title>Reproducibility of mtDNA analysis between laboratories: a report of the European DNA profiling group (EDNAP)</title><source>MEDLINE</source><source>Elsevier ScienceDirect Journals Complete</source><creator>Carracedo, A ; D'Aloja, E ; Dupuy, B ; Jangblad, A ; Karjalainen, M ; Lambert, C ; Parson, W ; Pfeiffer, H ; Pfitzinger, H ; Sabatier, M ; Syndercombe Court, D ; Vide, C</creator><creatorcontrib>Carracedo, A ; D'Aloja, E ; Dupuy, B ; Jangblad, A ; Karjalainen, M ; Lambert, C ; Parson, W ; Pfeiffer, H ; Pfitzinger, H ; Sabatier, M ; Syndercombe Court, D ; Vide, C</creatorcontrib><description>The aim of this collaborative exercise was to determine whether uniformity of mtDNA sequencing results could be achieved among different EDNAP laboratories. Laboratories were asked to sequence mtDNAHV1 region (16024–16365) from three bloodstains, proceeding in accordance with the protocol and strategies currently used in each individual laboratory. Cycle sequencing was used by 11 laboratories and solid phase single stranded sequencing was used by one laboratory. Different PCR strategies and PCR conditions were used by the different laboratories. Three laboratories used semi-nested PCR, two nested PCR, three direct amplification of HV1 and four amplification of overlapping fragments covering the HV1 region. Despite the diversity of methodologies used, all the laboratories reported the same results. The successful result of this exercise shows that PCR based mtDNA typing by automated sequencing is a valid, robust and reliable means of forensic identification despite the different strategies and methodologies used by the different laboratories.</description><identifier>ISSN: 0379-0738</identifier><identifier>EISSN: 1872-6283</identifier><identifier>DOI: 10.1016/S0379-0738(98)00154-6</identifier><identifier>PMID: 9871995</identifier><identifier>CODEN: FSINDR</identifier><language>eng</language><publisher>Kidlington: Elsevier Ireland Ltd</publisher><subject>Amplification ; Automation ; Biological and medical sciences ; Classical genetics, quantitative genetics, hybrids ; DNA fingerprinting ; DNA Fingerprinting - standards ; DNA Primers - chemistry ; DNA, Mitochondrial - analysis ; EDNAP ; Europe ; Forensic pathology ; Forensic sciences ; Fundamental and applied biological sciences. Psychology ; Genetics of eukaryotes. Biological and molecular evolution ; Human ; Humans ; Laboratories ; Laboratories - standards ; Legal medicine ; Mitochondrial DNA ; mtDNA ; Polymerase Chain Reaction ; Reproducibility of Results ; Retrospective Studies ; Sequence Analysis, DNA - standards ; Software ; Solid phases</subject><ispartof>Forensic science international, 1998-11, Vol.97 (2), p.165-170</ispartof><rights>1998 Elsevier Science Ireland Ltd</rights><rights>1999 INIST-CNRS</rights><rights>1998. Elsevier Science Ireland Ltd</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c530t-1d27b19c19a090fee69d28ff773acab67ad0ddbfb24714b827f9d707675c68973</citedby><cites>FETCH-LOGICAL-c530t-1d27b19c19a090fee69d28ff773acab67ad0ddbfb24714b827f9d707675c68973</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0379073898001546$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=1638244$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/9871995$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Carracedo, A</creatorcontrib><creatorcontrib>D'Aloja, E</creatorcontrib><creatorcontrib>Dupuy, B</creatorcontrib><creatorcontrib>Jangblad, A</creatorcontrib><creatorcontrib>Karjalainen, M</creatorcontrib><creatorcontrib>Lambert, C</creatorcontrib><creatorcontrib>Parson, W</creatorcontrib><creatorcontrib>Pfeiffer, H</creatorcontrib><creatorcontrib>Pfitzinger, H</creatorcontrib><creatorcontrib>Sabatier, M</creatorcontrib><creatorcontrib>Syndercombe Court, D</creatorcontrib><creatorcontrib>Vide, C</creatorcontrib><title>Reproducibility of mtDNA analysis between laboratories: a report of the European DNA profiling group (EDNAP)</title><title>Forensic science international</title><addtitle>Forensic Sci Int</addtitle><description>The aim of this collaborative exercise was to determine whether uniformity of mtDNA sequencing results could be achieved among different EDNAP laboratories. Laboratories were asked to sequence mtDNAHV1 region (16024–16365) from three bloodstains, proceeding in accordance with the protocol and strategies currently used in each individual laboratory. Cycle sequencing was used by 11 laboratories and solid phase single stranded sequencing was used by one laboratory. Different PCR strategies and PCR conditions were used by the different laboratories. Three laboratories used semi-nested PCR, two nested PCR, three direct amplification of HV1 and four amplification of overlapping fragments covering the HV1 region. Despite the diversity of methodologies used, all the laboratories reported the same results. The successful result of this exercise shows that PCR based mtDNA typing by automated sequencing is a valid, robust and reliable means of forensic identification despite the different strategies and methodologies used by the different laboratories.</description><subject>Amplification</subject><subject>Automation</subject><subject>Biological and medical sciences</subject><subject>Classical genetics, quantitative genetics, hybrids</subject><subject>DNA fingerprinting</subject><subject>DNA Fingerprinting - standards</subject><subject>DNA Primers - chemistry</subject><subject>DNA, Mitochondrial - analysis</subject><subject>EDNAP</subject><subject>Europe</subject><subject>Forensic pathology</subject><subject>Forensic sciences</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>Human</subject><subject>Humans</subject><subject>Laboratories</subject><subject>Laboratories - standards</subject><subject>Legal medicine</subject><subject>Mitochondrial DNA</subject><subject>mtDNA</subject><subject>Polymerase Chain Reaction</subject><subject>Reproducibility of Results</subject><subject>Retrospective Studies</subject><subject>Sequence Analysis, DNA - standards</subject><subject>Software</subject><subject>Solid phases</subject><issn>0379-0738</issn><issn>1872-6283</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqFkdtrFTEQxoMo9Vj9EwoBpbQPq8lecvGllPZ4gWKLl-eQTSY1Zc9mTbKW89-b7TlU8MWngZnf9zHzDUJHlLylhLJ330jDZUV4I06kOCWEdm3FnqAVFbyuWC2ap2j1iDxHL1K6I4R0Xc0O0IEUnErZrdDwFaYY7Gx87weftzg4vMmXX86xHvWwTT7hHvI9wIgH3Yeoc4ge0nuscYQpxLwI8k_A6zmGCfSIF22xdMVuvMW3McwTPlmX7s3pS_TM6SHBq309RD8-rL9ffKqurj9-vji_qkzXkFxRW_OeSkOlJpI4ACZtLZzjvNFG94xrS6ztXV-3nLa9qLmTlhPOeGeYkLw5RMc737LHrxlSVhufDAyDHiHMSTFJKRNdV8DX_4B3YY7l8KRqWSItOUtWqG5HmRhSiuDUFP1Gx62iRC2MeviFWoJWUqiHX6hFd7R3n_sN2EfVPvwyf7Of62T04KIejU9_zVkj6rYt2NkOgxLZbw9RJeNhNGB9BJOVDf4_i_wBlwekyA</recordid><startdate>19981109</startdate><enddate>19981109</enddate><creator>Carracedo, A</creator><creator>D'Aloja, E</creator><creator>Dupuy, B</creator><creator>Jangblad, A</creator><creator>Karjalainen, M</creator><creator>Lambert, C</creator><creator>Parson, W</creator><creator>Pfeiffer, H</creator><creator>Pfitzinger, H</creator><creator>Sabatier, M</creator><creator>Syndercombe Court, D</creator><creator>Vide, C</creator><general>Elsevier Ireland Ltd</general><general>Elsevier</general><general>Elsevier Limited</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QP</scope><scope>7RV</scope><scope>7U7</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB0</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>MBDVC</scope><scope>NAPCQ</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>19981109</creationdate><title>Reproducibility of mtDNA analysis between laboratories: a report of the European DNA profiling group (EDNAP)</title><author>Carracedo, A ; D'Aloja, E ; Dupuy, B ; Jangblad, A ; Karjalainen, M ; Lambert, C ; Parson, W ; Pfeiffer, H ; Pfitzinger, H ; Sabatier, M ; Syndercombe Court, D ; Vide, C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c530t-1d27b19c19a090fee69d28ff773acab67ad0ddbfb24714b827f9d707675c68973</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>Amplification</topic><topic>Automation</topic><topic>Biological and medical sciences</topic><topic>Classical genetics, quantitative genetics, hybrids</topic><topic>DNA fingerprinting</topic><topic>DNA Fingerprinting - standards</topic><topic>DNA Primers - chemistry</topic><topic>DNA, Mitochondrial - analysis</topic><topic>EDNAP</topic><topic>Europe</topic><topic>Forensic pathology</topic><topic>Forensic sciences</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genetics of eukaryotes. Biological and molecular evolution</topic><topic>Human</topic><topic>Humans</topic><topic>Laboratories</topic><topic>Laboratories - standards</topic><topic>Legal medicine</topic><topic>Mitochondrial DNA</topic><topic>mtDNA</topic><topic>Polymerase Chain Reaction</topic><topic>Reproducibility of Results</topic><topic>Retrospective Studies</topic><topic>Sequence Analysis, DNA - standards</topic><topic>Software</topic><topic>Solid phases</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Carracedo, A</creatorcontrib><creatorcontrib>D'Aloja, E</creatorcontrib><creatorcontrib>Dupuy, B</creatorcontrib><creatorcontrib>Jangblad, A</creatorcontrib><creatorcontrib>Karjalainen, M</creatorcontrib><creatorcontrib>Lambert, C</creatorcontrib><creatorcontrib>Parson, W</creatorcontrib><creatorcontrib>Pfeiffer, H</creatorcontrib><creatorcontrib>Pfitzinger, H</creatorcontrib><creatorcontrib>Sabatier, M</creatorcontrib><creatorcontrib>Syndercombe Court, D</creatorcontrib><creatorcontrib>Vide, C</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>ProQuest Nursing & Allied Health Database</collection><collection>Toxicology Abstracts</collection><collection>ProQuest Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>Biological Sciences</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>ProQuest research library</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Nursing & Allied Health Premium</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Forensic science international</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Carracedo, A</au><au>D'Aloja, E</au><au>Dupuy, B</au><au>Jangblad, A</au><au>Karjalainen, M</au><au>Lambert, C</au><au>Parson, W</au><au>Pfeiffer, H</au><au>Pfitzinger, H</au><au>Sabatier, M</au><au>Syndercombe Court, D</au><au>Vide, C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Reproducibility of mtDNA analysis between laboratories: a report of the European DNA profiling group (EDNAP)</atitle><jtitle>Forensic science international</jtitle><addtitle>Forensic Sci Int</addtitle><date>1998-11-09</date><risdate>1998</risdate><volume>97</volume><issue>2</issue><spage>165</spage><epage>170</epage><pages>165-170</pages><issn>0379-0738</issn><eissn>1872-6283</eissn><coden>FSINDR</coden><abstract>The aim of this collaborative exercise was to determine whether uniformity of mtDNA sequencing results could be achieved among different EDNAP laboratories. Laboratories were asked to sequence mtDNAHV1 region (16024–16365) from three bloodstains, proceeding in accordance with the protocol and strategies currently used in each individual laboratory. Cycle sequencing was used by 11 laboratories and solid phase single stranded sequencing was used by one laboratory. Different PCR strategies and PCR conditions were used by the different laboratories. Three laboratories used semi-nested PCR, two nested PCR, three direct amplification of HV1 and four amplification of overlapping fragments covering the HV1 region. Despite the diversity of methodologies used, all the laboratories reported the same results. The successful result of this exercise shows that PCR based mtDNA typing by automated sequencing is a valid, robust and reliable means of forensic identification despite the different strategies and methodologies used by the different laboratories.</abstract><cop>Kidlington</cop><pub>Elsevier Ireland Ltd</pub><pmid>9871995</pmid><doi>10.1016/S0379-0738(98)00154-6</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0379-0738 |
ispartof | Forensic science international, 1998-11, Vol.97 (2), p.165-170 |
issn | 0379-0738 1872-6283 |
language | eng |
recordid | cdi_proquest_miscellaneous_69116855 |
source | MEDLINE; Elsevier ScienceDirect Journals Complete |
subjects | Amplification Automation Biological and medical sciences Classical genetics, quantitative genetics, hybrids DNA fingerprinting DNA Fingerprinting - standards DNA Primers - chemistry DNA, Mitochondrial - analysis EDNAP Europe Forensic pathology Forensic sciences Fundamental and applied biological sciences. Psychology Genetics of eukaryotes. Biological and molecular evolution Human Humans Laboratories Laboratories - standards Legal medicine Mitochondrial DNA mtDNA Polymerase Chain Reaction Reproducibility of Results Retrospective Studies Sequence Analysis, DNA - standards Software Solid phases |
title | Reproducibility of mtDNA analysis between laboratories: a report of the European DNA profiling group (EDNAP) |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-29T07%3A10%3A16IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Reproducibility%20of%20mtDNA%20analysis%20between%20laboratories:%20a%20report%20of%20the%20European%20DNA%20profiling%20group%20(EDNAP)&rft.jtitle=Forensic%20science%20international&rft.au=Carracedo,%20A&rft.date=1998-11-09&rft.volume=97&rft.issue=2&rft.spage=165&rft.epage=170&rft.pages=165-170&rft.issn=0379-0738&rft.eissn=1872-6283&rft.coden=FSINDR&rft_id=info:doi/10.1016/S0379-0738(98)00154-6&rft_dat=%3Cproquest_cross%3E69116855%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2900101696&rft_id=info:pmid/9871995&rft_els_id=S0379073898001546&rfr_iscdi=true |