Phylogenetic Supermatrix Analysis of GenBank Sequences from 2228 Papilionoid Legumes

A comprehensive phylogeny of papilionoid legumes was inferred from sequences of 2228 taxa in GenBank release 147. A semiautomated analysis pipeline was constructed to download, parse, assemble, align, combine, and build trees from a pool of 11,881 sequences. Initial steps included all-against-all BL...

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Veröffentlicht in:	Systematic biology 2006-10, Vol.55 (5), p.818-836
Hauptverfasser:	McMahon, Michelle M., Sanderson, Michael J., Savolainan, Vincent
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Alignment Base Sequence Biological taxonomies Bootstrap method Cluster Analysis Computational Biology - methods Data bases Databases, Nucleic Acid Datasets Evolutionary biology Fabaceae - classification Fabaceae - genetics Fabaceae/Leguminosae Genera Heuristics Legumes Matrix Molecular Sequence Data Papilionoideae Parsimony Phylogenetics Phylogeny phyloinformatics Plant Proteins - genetics Sequence Alignment Sequence Analysis, DNA - methods supermatrix Taxa Taxonomy
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