Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core
1 School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, San 56-1 Shillim-dong, Kwanak-gu, Seoul 151-742, Republic of Korea 2 South Sea Institute/Korea Ocean Research and Development Institute (KORDI), 391 Jang mok-ri, Jangmok-myon, Geoje 656-83...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2007-02, Vol.57 (2), p.409-413 |
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| creator | Kim, Yoon-Gon Choi, Dong Han Hyun, Sangmin Cho, Byung Cheol |
| description | 1 School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, San 56-1 Shillim-dong, Kwanak-gu, Seoul 151-742, Republic of Korea
2 South Sea Institute/Korea Ocean Research and Development Institute (KORDI), 391 Jang mok-ri, Jangmok-myon, Geoje 656-830, Republic of Korea
Correspondence Byung Cheol Cho bccho{at}snu.ac.kr
A halotolerant, facultatively alkaliphilic bacterium, designated CL-MP28 T , was isolated from the surface of a sediment core sample collected at a depth of 2247 m in the Ulleung Basin of the East Sea, Korea. Phylogenetic analysis of the 16S rRNA gene sequence of strain CL-MP28 T revealed an affiliation with the genus Oceanobacillus . The sequence similarities between the isolate and type strains of members of the genus Oceanobacillus were in the range 95.096.0 %, indicating that strain CL-MP28 T represented a novel species within the genus. The strain was found to be Gram-positive, rod-shaped and motile by means of peritrichous flagella and was shown to produce ellipsoidal spores. The strain was strictly aerobic and able to grow with NaCl at concentrations in the range 014 % (w/v) at pH 7.5. The strain grew at temperatures of 1542 °C and at pH 6.59.5. The major fatty acids were anteiso-C 15 : 0 (64.9 %), anteiso-C 17 : 0 (11.9 %) and iso-C 16 : 0 (7.7 %). The major isoprenoid quinone was MK-7. The DNA G+C content was 40.2 mol%. According to the 16S rRNA gene sequence, DNADNA relatedness and physiological data and the fatty acid composition, CL-MP28 T could be assigned to the genus Oceanobacillus , but is distinguishable from the recognized species of this genus. Strain CL-MP28 T therefore represents a novel species within the genus Oceanobacillus , for which the name Oceanobacillus profundus sp. nov. is proposed. The type strain is CL-MP28 T (=KCCM 42318 T =DSM 18246 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain CL-MP28 T is DQ386635 .
Details of the whole-cell fatty acid compositions of strain CL-MP28 T and related Oceanobacillus species are available in a supplementary table in IJSEM Online.
Present address: Marine Environmental Research Department, KORDI, Ansan 426-744, Republic of Korea |
| doi_str_mv | 10.1099/ijs.0.64375-0 |
| format | Article |
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2 South Sea Institute/Korea Ocean Research and Development Institute (KORDI), 391 Jang mok-ri, Jangmok-myon, Geoje 656-830, Republic of Korea
Correspondence Byung Cheol Cho bccho{at}snu.ac.kr
A halotolerant, facultatively alkaliphilic bacterium, designated CL-MP28 T , was isolated from the surface of a sediment core sample collected at a depth of 2247 m in the Ulleung Basin of the East Sea, Korea. Phylogenetic analysis of the 16S rRNA gene sequence of strain CL-MP28 T revealed an affiliation with the genus Oceanobacillus . The sequence similarities between the isolate and type strains of members of the genus Oceanobacillus were in the range 95.096.0 %, indicating that strain CL-MP28 T represented a novel species within the genus. The strain was found to be Gram-positive, rod-shaped and motile by means of peritrichous flagella and was shown to produce ellipsoidal spores. The strain was strictly aerobic and able to grow with NaCl at concentrations in the range 014 % (w/v) at pH 7.5. The strain grew at temperatures of 1542 °C and at pH 6.59.5. The major fatty acids were anteiso-C 15 : 0 (64.9 %), anteiso-C 17 : 0 (11.9 %) and iso-C 16 : 0 (7.7 %). The major isoprenoid quinone was MK-7. The DNA G+C content was 40.2 mol%. According to the 16S rRNA gene sequence, DNADNA relatedness and physiological data and the fatty acid composition, CL-MP28 T could be assigned to the genus Oceanobacillus , but is distinguishable from the recognized species of this genus. Strain CL-MP28 T therefore represents a novel species within the genus Oceanobacillus , for which the name Oceanobacillus profundus sp. nov. is proposed. The type strain is CL-MP28 T (=KCCM 42318 T =DSM 18246 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain CL-MP28 T is DQ386635 .
Details of the whole-cell fatty acid compositions of strain CL-MP28 T and related Oceanobacillus species are available in a supplementary table in IJSEM Online.
Present address: Marine Environmental Research Department, KORDI, Ansan 426-744, Republic of Korea</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.64375-0</identifier><identifier>PMID: 17267988</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Aerobiosis ; Animal, plant and microbial ecology ; Bacillaceae - classification ; Bacillaceae - cytology ; Bacillaceae - isolation & purification ; Bacillaceae - physiology ; Bacterial Typing Techniques ; Bacteriology ; Base Composition ; Biological and medical sciences ; Carbohydrate Metabolism ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Fatty Acids - analysis ; Fatty Acids - chemistry ; Fundamental and applied biological sciences. Psychology ; Genes, rRNA ; Geologic Sediments - microbiology ; Hydrogen-Ion Concentration ; Korea ; Microbial ecology ; Microbiology ; Molecular Sequence Data ; Movement ; Nucleic Acid Hybridization ; Oceanobacillus profundus ; Phylogeny ; Quinones - analysis ; Quinones - chemistry ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; Seawater - microbiology ; Sequence Analysis, DNA ; Systematics ; Temperature ; Various environments (extraatmospheric space, air, water) ; Water Microbiology</subject><ispartof>International journal of systematic and evolutionary microbiology, 2007-02, Vol.57 (2), p.409-413</ispartof><rights>2007 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c489t-6246054b38efdef028baf50862ecddf4f672a8fbea4e59f85b2865e9d2653e403</citedby><cites>FETCH-LOGICAL-c489t-6246054b38efdef028baf50862ecddf4f672a8fbea4e59f85b2865e9d2653e403</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,3747,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18511730$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17267988$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kim, Yoon-Gon</creatorcontrib><creatorcontrib>Choi, Dong Han</creatorcontrib><creatorcontrib>Hyun, Sangmin</creatorcontrib><creatorcontrib>Cho, Byung Cheol</creatorcontrib><title>Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, San 56-1 Shillim-dong, Kwanak-gu, Seoul 151-742, Republic of Korea
2 South Sea Institute/Korea Ocean Research and Development Institute (KORDI), 391 Jang mok-ri, Jangmok-myon, Geoje 656-830, Republic of Korea
Correspondence Byung Cheol Cho bccho{at}snu.ac.kr
A halotolerant, facultatively alkaliphilic bacterium, designated CL-MP28 T , was isolated from the surface of a sediment core sample collected at a depth of 2247 m in the Ulleung Basin of the East Sea, Korea. Phylogenetic analysis of the 16S rRNA gene sequence of strain CL-MP28 T revealed an affiliation with the genus Oceanobacillus . The sequence similarities between the isolate and type strains of members of the genus Oceanobacillus were in the range 95.096.0 %, indicating that strain CL-MP28 T represented a novel species within the genus. The strain was found to be Gram-positive, rod-shaped and motile by means of peritrichous flagella and was shown to produce ellipsoidal spores. The strain was strictly aerobic and able to grow with NaCl at concentrations in the range 014 % (w/v) at pH 7.5. The strain grew at temperatures of 1542 °C and at pH 6.59.5. The major fatty acids were anteiso-C 15 : 0 (64.9 %), anteiso-C 17 : 0 (11.9 %) and iso-C 16 : 0 (7.7 %). The major isoprenoid quinone was MK-7. The DNA G+C content was 40.2 mol%. According to the 16S rRNA gene sequence, DNADNA relatedness and physiological data and the fatty acid composition, CL-MP28 T could be assigned to the genus Oceanobacillus , but is distinguishable from the recognized species of this genus. Strain CL-MP28 T therefore represents a novel species within the genus Oceanobacillus , for which the name Oceanobacillus profundus sp. nov. is proposed. The type strain is CL-MP28 T (=KCCM 42318 T =DSM 18246 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain CL-MP28 T is DQ386635 .
Details of the whole-cell fatty acid compositions of strain CL-MP28 T and related Oceanobacillus species are available in a supplementary table in IJSEM Online.
Present address: Marine Environmental Research Department, KORDI, Ansan 426-744, Republic of Korea</description><subject>Aerobiosis</subject><subject>Animal, plant and microbial ecology</subject><subject>Bacillaceae - classification</subject><subject>Bacillaceae - cytology</subject><subject>Bacillaceae - isolation & purification</subject><subject>Bacillaceae - physiology</subject><subject>Bacterial Typing Techniques</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biological and medical sciences</subject><subject>Carbohydrate Metabolism</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty Acids - analysis</subject><subject>Fatty Acids - chemistry</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes, rRNA</subject><subject>Geologic Sediments - microbiology</subject><subject>Hydrogen-Ion Concentration</subject><subject>Korea</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Movement</subject><subject>Nucleic Acid Hybridization</subject><subject>Oceanobacillus profundus</subject><subject>Phylogeny</subject><subject>Quinones - analysis</subject><subject>Quinones - chemistry</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><subject>Systematics</subject><subject>Temperature</subject><subject>Various environments (extraatmospheric space, air, water)</subject><subject>Water Microbiology</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE1LxDAQhoMofh-9Si_qxdYkTdLkKOIXLOxFzyFNJhppmzXZKv57u-6iR08zDA_vvDwInRBcEazUVXjLFa4Eqxte4i20T5gQJcc12_7dqdhDBzm_YTwdMN5Fe6SholFS7qPHuQUzxNbY0HVjLhYp-nFw05YXVTHEj-qyCDl2Zgmu8Cn2hSkcwKLMYIoMLvQwLAsbExyhHW-6DMebeYie726fbh7K2fz-8eZ6Vlom1bIUdOrAWVtL8A48prI1nmMpKFjnPPOioUb6FgwDrrzkLZWCg3JU8BoYrg_R-Tp3qvo-Ql7qPmQLXWcGiGPWQirREM7_BYnigkrWTGC5Bm2KOSfwepFCb9KXJlivJOtJssb6R7JeNTjdBI9tD-6P3lidgLMNYLI1nU9msCH_cZIT0tSroIs19xpeXj9DAv0CQx-mGm2Iq6e80VQzrOpvtBSSdA</recordid><startdate>20070201</startdate><enddate>20070201</enddate><creator>Kim, Yoon-Gon</creator><creator>Choi, Dong Han</creator><creator>Hyun, Sangmin</creator><creator>Cho, Byung Cheol</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H96</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20070201</creationdate><title>Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core</title><author>Kim, Yoon-Gon ; Choi, Dong Han ; Hyun, Sangmin ; Cho, Byung Cheol</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c489t-6246054b38efdef028baf50862ecddf4f672a8fbea4e59f85b2865e9d2653e403</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Aerobiosis</topic><topic>Animal, plant and microbial ecology</topic><topic>Bacillaceae - classification</topic><topic>Bacillaceae - cytology</topic><topic>Bacillaceae - isolation & purification</topic><topic>Bacillaceae - physiology</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>Carbohydrate Metabolism</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty Acids - analysis</topic><topic>Fatty Acids - chemistry</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, rRNA</topic><topic>Geologic Sediments - microbiology</topic><topic>Hydrogen-Ion Concentration</topic><topic>Korea</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Movement</topic><topic>Nucleic Acid Hybridization</topic><topic>Oceanobacillus profundus</topic><topic>Phylogeny</topic><topic>Quinones - analysis</topic><topic>Quinones - chemistry</topic><topic>RNA, Bacterial - genetics</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Seawater - microbiology</topic><topic>Sequence Analysis, DNA</topic><topic>Systematics</topic><topic>Temperature</topic><topic>Various environments (extraatmospheric space, air, water)</topic><topic>Water Microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kim, Yoon-Gon</creatorcontrib><creatorcontrib>Choi, Dong Han</creatorcontrib><creatorcontrib>Hyun, Sangmin</creatorcontrib><creatorcontrib>Cho, Byung Cheol</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 2: Ocean Technology, Policy & Non-Living Resources</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kim, Yoon-Gon</au><au>Choi, Dong Han</au><au>Hyun, Sangmin</au><au>Cho, Byung Cheol</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2007-02-01</date><risdate>2007</risdate><volume>57</volume><issue>2</issue><spage>409</spage><epage>413</epage><pages>409-413</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, San 56-1 Shillim-dong, Kwanak-gu, Seoul 151-742, Republic of Korea
2 South Sea Institute/Korea Ocean Research and Development Institute (KORDI), 391 Jang mok-ri, Jangmok-myon, Geoje 656-830, Republic of Korea
Correspondence Byung Cheol Cho bccho{at}snu.ac.kr
A halotolerant, facultatively alkaliphilic bacterium, designated CL-MP28 T , was isolated from the surface of a sediment core sample collected at a depth of 2247 m in the Ulleung Basin of the East Sea, Korea. Phylogenetic analysis of the 16S rRNA gene sequence of strain CL-MP28 T revealed an affiliation with the genus Oceanobacillus . The sequence similarities between the isolate and type strains of members of the genus Oceanobacillus were in the range 95.096.0 %, indicating that strain CL-MP28 T represented a novel species within the genus. The strain was found to be Gram-positive, rod-shaped and motile by means of peritrichous flagella and was shown to produce ellipsoidal spores. The strain was strictly aerobic and able to grow with NaCl at concentrations in the range 014 % (w/v) at pH 7.5. The strain grew at temperatures of 1542 °C and at pH 6.59.5. The major fatty acids were anteiso-C 15 : 0 (64.9 %), anteiso-C 17 : 0 (11.9 %) and iso-C 16 : 0 (7.7 %). The major isoprenoid quinone was MK-7. The DNA G+C content was 40.2 mol%. According to the 16S rRNA gene sequence, DNADNA relatedness and physiological data and the fatty acid composition, CL-MP28 T could be assigned to the genus Oceanobacillus , but is distinguishable from the recognized species of this genus. Strain CL-MP28 T therefore represents a novel species within the genus Oceanobacillus , for which the name Oceanobacillus profundus sp. nov. is proposed. The type strain is CL-MP28 T (=KCCM 42318 T =DSM 18246 T ).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain CL-MP28 T is DQ386635 .
Details of the whole-cell fatty acid compositions of strain CL-MP28 T and related Oceanobacillus species are available in a supplementary table in IJSEM Online.
Present address: Marine Environmental Research Department, KORDI, Ansan 426-744, Republic of Korea</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>17267988</pmid><doi>10.1099/ijs.0.64375-0</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1466-5026 |
| ispartof | International journal of systematic and evolutionary microbiology, 2007-02, Vol.57 (2), p.409-413 |
| issn | 1466-5026 1466-5034 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_68967155 |
| source | MEDLINE; Free E-Journal (出版社公開部分のみ）; Microbiology Society; Alma/SFX Local Collection |
| subjects | Aerobiosis Animal, plant and microbial ecology Bacillaceae - classification Bacillaceae - cytology Bacillaceae - isolation & purification Bacillaceae - physiology Bacterial Typing Techniques Bacteriology Base Composition Biological and medical sciences Carbohydrate Metabolism DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Fatty Acids - analysis Fatty Acids - chemistry Fundamental and applied biological sciences. Psychology Genes, rRNA Geologic Sediments - microbiology Hydrogen-Ion Concentration Korea Microbial ecology Microbiology Molecular Sequence Data Movement Nucleic Acid Hybridization Oceanobacillus profundus Phylogeny Quinones - analysis Quinones - chemistry RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics Seawater - microbiology Sequence Analysis, DNA Systematics Temperature Various environments (extraatmospheric space, air, water) Water Microbiology |
| title | Oceanobacillus profundus sp. nov., isolated from a deep-sea sediment core |
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