Maribius salinus gen. nov., sp. nov., isolated from a solar saltern and Maribius pelagius sp. nov., cultured from the Sargasso Sea, belonging to the Roseobacter clade

1 School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, Seoul 151-742, Republic of Korea 2 Division of Life and Marine Sciences, Inha University, Incheon 402-751, Republic of Korea 3 Department of Environmental Sciences, University of Californi...

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Veröffentlicht in:International journal of systematic and evolutionary microbiology 2007-02, Vol.57 (2), p.270-275
Hauptverfasser: Choi, Dong H, Cho, Jang-Cheon, Lanoil, Brian D, Giovannoni, Stephen J, Cho, Byung C
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container_title International journal of systematic and evolutionary microbiology
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creator Choi, Dong H
Cho, Jang-Cheon
Lanoil, Brian D
Giovannoni, Stephen J
Cho, Byung C
description 1 School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, Seoul 151-742, Republic of Korea 2 Division of Life and Marine Sciences, Inha University, Incheon 402-751, Republic of Korea 3 Department of Environmental Sciences, University of California, Riverside, CA 92521, USA 4 Department of Microbiology, Oregon State University, Corvallis, OR 97331, USA Correspondence Byung C. Cho bccho{at}snu.ac.kr Two strictly aerobic, Gram-negative bacteria, designated strains CL-SP27 T and B5-6 T , were isolated from the hypersaline water of a solar saltern in Korea and from the surface water of the Sargasso Sea, respectively. The two strains were rod-shaped, non-motile and grew on marine agar 2216 as beige colonies. Phylogenetic analyses of 16S rRNA gene sequences revealed a clear affiliation of the novel strains to the family Rhodobacteraceae . However, the novel strains were only distantly related to members of the Roseobacter clade, forming a distinct lineage. Although the 16S rRNA gene sequence similarity between strains CL-SP27 T and B5-6 T was very high (99.6 %), DNA–DNA relatedness between the strains was 48.4 %, suggesting that the strains be categorized as two genospecies. Additionally, the two novel strains could be differentiated by DNA G+C contents, fatty acid profiles, carbon source utilization patterns, antibiotic susceptibilities and biochemical characteristics. Based on taxonomic data obtained in this study, strains CL-SP27 T and B5-6 T represent separate species within a novel genus of the family Rhodobacteraceae , for which the names Maribius salinus gen. nov., sp. nov. (type species) and Maribius pelagius sp. nov. are proposed. The type strains of Maribius salinus and Maribius pelagius are CL-SP27 T (=KCCM 42113 T =JCM 13037 T ) and B5-6 T (=KCCM 42336 T =JCM 14009 T ), respectively. Abbreviations: PHB, poly -hydroxybutyrate The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strain CL-SP27 T and B5-6 T are AY906863 and DQ514326 , respectively. A table giving the major characteristics that differentiate strains CL-SP27 T and B5-6 T from other related members of the family Rhodobacteraceae is available as supplementary material in IJSEM Online. These authors contributed equally to this work. Present address: Marine Environmental Research Department, Korea Ocean Research and Development Institute (KORDI), Ansan 426-744, Republic of Korea.
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Cho bccho{at}snu.ac.kr Two strictly aerobic, Gram-negative bacteria, designated strains CL-SP27 T and B5-6 T , were isolated from the hypersaline water of a solar saltern in Korea and from the surface water of the Sargasso Sea, respectively. The two strains were rod-shaped, non-motile and grew on marine agar 2216 as beige colonies. Phylogenetic analyses of 16S rRNA gene sequences revealed a clear affiliation of the novel strains to the family Rhodobacteraceae . However, the novel strains were only distantly related to members of the Roseobacter clade, forming a distinct lineage. Although the 16S rRNA gene sequence similarity between strains CL-SP27 T and B5-6 T was very high (99.6 %), DNA–DNA relatedness between the strains was 48.4 %, suggesting that the strains be categorized as two genospecies. Additionally, the two novel strains could be differentiated by DNA G+C contents, fatty acid profiles, carbon source utilization patterns, antibiotic susceptibilities and biochemical characteristics. Based on taxonomic data obtained in this study, strains CL-SP27 T and B5-6 T represent separate species within a novel genus of the family Rhodobacteraceae , for which the names Maribius salinus gen. nov., sp. nov. (type species) and Maribius pelagius sp. nov. are proposed. The type strains of Maribius salinus and Maribius pelagius are CL-SP27 T (=KCCM 42113 T =JCM 13037 T ) and B5-6 T (=KCCM 42336 T =JCM 14009 T ), respectively. Abbreviations: PHB, poly -hydroxybutyrate The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strain CL-SP27 T and B5-6 T are AY906863 and DQ514326 , respectively. A table giving the major characteristics that differentiate strains CL-SP27 T and B5-6 T from other related members of the family Rhodobacteraceae is available as supplementary material in IJSEM Online. These authors contributed equally to this work. Present address: Marine Environmental Research Department, Korea Ocean Research and Development Institute (KORDI), Ansan 426-744, Republic of Korea.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.64552-0</identifier><identifier>PMID: 17267963</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Animal, plant and microbial ecology ; Anti-Bacterial Agents - pharmacology ; Bacterial Typing Techniques ; Bacteriology ; Base Composition ; Biological and medical sciences ; Carbohydrate Metabolism ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Fatty Acids - analysis ; Fatty Acids - chemistry ; Fundamental and applied biological sciences. Psychology ; Genes, rRNA - genetics ; Korea ; Microbial ecology ; Microbiology ; Molecular Sequence Data ; Movement ; Nucleic Acid Hybridization ; Phylogeny ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; Roseobacter - classification ; Roseobacter - cytology ; Roseobacter - isolation &amp; purification ; Roseobacter - physiology ; Seawater - microbiology ; Sequence Analysis, DNA ; Systematics ; Various environments (extraatmospheric space, air, water) ; Water Microbiology</subject><ispartof>International journal of systematic and evolutionary microbiology, 2007-02, Vol.57 (2), p.270-275</ispartof><rights>2007 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c392t-3da66648a3c19edcf1a5756b6867496e969a94d3cccf82dcaa38efda975e674e3</citedby><cites>FETCH-LOGICAL-c392t-3da66648a3c19edcf1a5756b6867496e969a94d3cccf82dcaa38efda975e674e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,3747,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=18511705$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17267963$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Choi, Dong H</creatorcontrib><creatorcontrib>Cho, Jang-Cheon</creatorcontrib><creatorcontrib>Lanoil, Brian D</creatorcontrib><creatorcontrib>Giovannoni, Stephen J</creatorcontrib><creatorcontrib>Cho, Byung C</creatorcontrib><title>Maribius salinus gen. nov., sp. nov., isolated from a solar saltern and Maribius pelagius sp. nov., cultured from the Sargasso Sea, belonging to the Roseobacter clade</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, Seoul 151-742, Republic of Korea 2 Division of Life and Marine Sciences, Inha University, Incheon 402-751, Republic of Korea 3 Department of Environmental Sciences, University of California, Riverside, CA 92521, USA 4 Department of Microbiology, Oregon State University, Corvallis, OR 97331, USA Correspondence Byung C. Cho bccho{at}snu.ac.kr Two strictly aerobic, Gram-negative bacteria, designated strains CL-SP27 T and B5-6 T , were isolated from the hypersaline water of a solar saltern in Korea and from the surface water of the Sargasso Sea, respectively. The two strains were rod-shaped, non-motile and grew on marine agar 2216 as beige colonies. Phylogenetic analyses of 16S rRNA gene sequences revealed a clear affiliation of the novel strains to the family Rhodobacteraceae . However, the novel strains were only distantly related to members of the Roseobacter clade, forming a distinct lineage. Although the 16S rRNA gene sequence similarity between strains CL-SP27 T and B5-6 T was very high (99.6 %), DNA–DNA relatedness between the strains was 48.4 %, suggesting that the strains be categorized as two genospecies. Additionally, the two novel strains could be differentiated by DNA G+C contents, fatty acid profiles, carbon source utilization patterns, antibiotic susceptibilities and biochemical characteristics. Based on taxonomic data obtained in this study, strains CL-SP27 T and B5-6 T represent separate species within a novel genus of the family Rhodobacteraceae , for which the names Maribius salinus gen. nov., sp. nov. (type species) and Maribius pelagius sp. nov. are proposed. The type strains of Maribius salinus and Maribius pelagius are CL-SP27 T (=KCCM 42113 T =JCM 13037 T ) and B5-6 T (=KCCM 42336 T =JCM 14009 T ), respectively. Abbreviations: PHB, poly -hydroxybutyrate The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strain CL-SP27 T and B5-6 T are AY906863 and DQ514326 , respectively. A table giving the major characteristics that differentiate strains CL-SP27 T and B5-6 T from other related members of the family Rhodobacteraceae is available as supplementary material in IJSEM Online. These authors contributed equally to this work. 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Psychology</subject><subject>Genes, rRNA - genetics</subject><subject>Korea</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Movement</subject><subject>Nucleic Acid Hybridization</subject><subject>Phylogeny</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Roseobacter - classification</subject><subject>Roseobacter - cytology</subject><subject>Roseobacter - isolation &amp; purification</subject><subject>Roseobacter - physiology</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><subject>Systematics</subject><subject>Various environments (extraatmospheric space, air, water)</subject><subject>Water Microbiology</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkc1u1TAQhSMEoqWwZIu8ATZNsJPYiZeoooBUhERhbU2cSa4rJ754EhAv1OfE96e3q5nxfOeMpZNlrwUvBNf6g7ujgheqlrLM-ZPsXNRK5ZJX9dNTX6qz7AXRHefpgfPn2ZloStVoVZ1n998gus6txAi8m1MdcS7YHP4Ul4y2D52j4GHBng0xTAzYbow7yYJxZjD37OSzRQ_j3vCktqtf1vigXjbIbiGOQBTYLcIl69CHeXTzyJawX_8IhKEDm9yZ9dDjy-zZAJ7w1bFeZL-uP_28-pLffP_89erjTW4rXS551YNSqm6hskJjbwcBspGqU61qaq1QKw267itr7dCWvQWoWhx60I3ERGB1kb07-G5j-L0iLWZyZNF7mDGsZFSrVV2XbQLzA2hjIIo4mG10E8R_RnCzC8akYAw3-2AMT_ybo_HaTdg_0sckEvD2CABZ8EOE2Tp65FopRMNl4t4fuI0bN39dRJMCm1z6RufC7qhsTGnKhlf_AR1cpjA</recordid><startdate>20070201</startdate><enddate>20070201</enddate><creator>Choi, Dong H</creator><creator>Cho, Jang-Cheon</creator><creator>Lanoil, Brian D</creator><creator>Giovannoni, Stephen J</creator><creator>Cho, Byung C</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20070201</creationdate><title>Maribius salinus gen. nov., sp. nov., isolated from a solar saltern and Maribius pelagius sp. nov., cultured from the Sargasso Sea, belonging to the Roseobacter clade</title><author>Choi, Dong H ; Cho, Jang-Cheon ; Lanoil, Brian D ; Giovannoni, Stephen J ; Cho, Byung C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c392t-3da66648a3c19edcf1a5756b6867496e969a94d3cccf82dcaa38efda975e674e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Animal, plant and microbial ecology</topic><topic>Anti-Bacterial Agents - pharmacology</topic><topic>Bacterial Typing Techniques</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biological and medical sciences</topic><topic>Carbohydrate Metabolism</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty Acids - analysis</topic><topic>Fatty Acids - chemistry</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, rRNA - genetics</topic><topic>Korea</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Movement</topic><topic>Nucleic Acid Hybridization</topic><topic>Phylogeny</topic><topic>RNA, Bacterial - genetics</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Roseobacter - classification</topic><topic>Roseobacter - cytology</topic><topic>Roseobacter - isolation &amp; purification</topic><topic>Roseobacter - physiology</topic><topic>Seawater - microbiology</topic><topic>Sequence Analysis, DNA</topic><topic>Systematics</topic><topic>Various environments (extraatmospheric space, air, water)</topic><topic>Water Microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Choi, Dong H</creatorcontrib><creatorcontrib>Cho, Jang-Cheon</creatorcontrib><creatorcontrib>Lanoil, Brian D</creatorcontrib><creatorcontrib>Giovannoni, Stephen J</creatorcontrib><creatorcontrib>Cho, Byung C</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Choi, Dong H</au><au>Cho, Jang-Cheon</au><au>Lanoil, Brian D</au><au>Giovannoni, Stephen J</au><au>Cho, Byung C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Maribius salinus gen. nov., sp. nov., isolated from a solar saltern and Maribius pelagius sp. nov., cultured from the Sargasso Sea, belonging to the Roseobacter clade</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2007-02-01</date><risdate>2007</risdate><volume>57</volume><issue>2</issue><spage>270</spage><epage>275</epage><pages>270-275</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, Seoul 151-742, Republic of Korea 2 Division of Life and Marine Sciences, Inha University, Incheon 402-751, Republic of Korea 3 Department of Environmental Sciences, University of California, Riverside, CA 92521, USA 4 Department of Microbiology, Oregon State University, Corvallis, OR 97331, USA Correspondence Byung C. Cho bccho{at}snu.ac.kr Two strictly aerobic, Gram-negative bacteria, designated strains CL-SP27 T and B5-6 T , were isolated from the hypersaline water of a solar saltern in Korea and from the surface water of the Sargasso Sea, respectively. The two strains were rod-shaped, non-motile and grew on marine agar 2216 as beige colonies. Phylogenetic analyses of 16S rRNA gene sequences revealed a clear affiliation of the novel strains to the family Rhodobacteraceae . However, the novel strains were only distantly related to members of the Roseobacter clade, forming a distinct lineage. Although the 16S rRNA gene sequence similarity between strains CL-SP27 T and B5-6 T was very high (99.6 %), DNA–DNA relatedness between the strains was 48.4 %, suggesting that the strains be categorized as two genospecies. Additionally, the two novel strains could be differentiated by DNA G+C contents, fatty acid profiles, carbon source utilization patterns, antibiotic susceptibilities and biochemical characteristics. Based on taxonomic data obtained in this study, strains CL-SP27 T and B5-6 T represent separate species within a novel genus of the family Rhodobacteraceae , for which the names Maribius salinus gen. nov., sp. nov. (type species) and Maribius pelagius sp. nov. are proposed. The type strains of Maribius salinus and Maribius pelagius are CL-SP27 T (=KCCM 42113 T =JCM 13037 T ) and B5-6 T (=KCCM 42336 T =JCM 14009 T ), respectively. Abbreviations: PHB, poly -hydroxybutyrate The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strain CL-SP27 T and B5-6 T are AY906863 and DQ514326 , respectively. A table giving the major characteristics that differentiate strains CL-SP27 T and B5-6 T from other related members of the family Rhodobacteraceae is available as supplementary material in IJSEM Online. These authors contributed equally to this work. Present address: Marine Environmental Research Department, Korea Ocean Research and Development Institute (KORDI), Ansan 426-744, Republic of Korea.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>17267963</pmid><doi>10.1099/ijs.0.64552-0</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record>
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source MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection
subjects Animal, plant and microbial ecology
Anti-Bacterial Agents - pharmacology
Bacterial Typing Techniques
Bacteriology
Base Composition
Biological and medical sciences
Carbohydrate Metabolism
DNA, Bacterial - chemistry
DNA, Bacterial - genetics
DNA, Ribosomal - chemistry
DNA, Ribosomal - genetics
Fatty Acids - analysis
Fatty Acids - chemistry
Fundamental and applied biological sciences. Psychology
Genes, rRNA - genetics
Korea
Microbial ecology
Microbiology
Molecular Sequence Data
Movement
Nucleic Acid Hybridization
Phylogeny
RNA, Bacterial - genetics
RNA, Ribosomal, 16S - genetics
Roseobacter - classification
Roseobacter - cytology
Roseobacter - isolation & purification
Roseobacter - physiology
Seawater - microbiology
Sequence Analysis, DNA
Systematics
Various environments (extraatmospheric space, air, water)
Water Microbiology
title Maribius salinus gen. nov., sp. nov., isolated from a solar saltern and Maribius pelagius sp. nov., cultured from the Sargasso Sea, belonging to the Roseobacter clade
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