Seasonal and management influences on bacterial community structure in an upland grassland soil
Floristically diverse Nardo–Galion upland grasslands are common in Ireland and the UK and are valuable in agricultural, environmental and ecological terms. Under improvement (inputs of lime, fertiliser and re-seeding), they convert to mesotrophic grassland containing very few plant species. The effe...
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| Veröffentlicht in: | FEMS microbiology ecology 2005-08, Vol.53 (3), p.329-337 |
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| creator | Kennedy, Nabla M. Gleeson, Deirdre E. Connolly, John Clipson, Nicholas J.W. |
| description | Floristically diverse
Nardo–Galion upland grasslands are common in Ireland and the UK and are valuable in agricultural, environmental and ecological terms. Under improvement (inputs of lime, fertiliser and re-seeding), they convert to mesotrophic grassland containing very few plant species. The effects of upland grassland improvement and seasonality on soil microbial communities were investigated at an upland site. Samples were taken at five times in one year in order to observe seasonal trends, and bacterial community structure was monitored using automated ribosomal intergenic spacer analysis (ARISA), a DNA-fingerprinting approach. Differences in soil chemistry and bacterial community structure between unimproved and improved grassland soils were noted. Season was also found to cause mild fluctuations in bacterial community structure, with soil samples from colder months (October and December) more correlated with change in ribotype profiles than samples from warmer months. However, for the majority of seasons clear differences in bacterial community structures from unimproved and improved soils could be seen, indicating seasonal influences did not obscure effects associated with improvement. |
| doi_str_mv | 10.1016/j.femsec.2005.01.013 |
| format | Article |
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Nardo–Galion upland grasslands are common in Ireland and the UK and are valuable in agricultural, environmental and ecological terms. Under improvement (inputs of lime, fertiliser and re-seeding), they convert to mesotrophic grassland containing very few plant species. The effects of upland grassland improvement and seasonality on soil microbial communities were investigated at an upland site. Samples were taken at five times in one year in order to observe seasonal trends, and bacterial community structure was monitored using automated ribosomal intergenic spacer analysis (ARISA), a DNA-fingerprinting approach. Differences in soil chemistry and bacterial community structure between unimproved and improved grassland soils were noted. Season was also found to cause mild fluctuations in bacterial community structure, with soil samples from colder months (October and December) more correlated with change in ribotype profiles than samples from warmer months. However, for the majority of seasons clear differences in bacterial community structures from unimproved and improved soils could be seen, indicating seasonal influences did not obscure effects associated with improvement.</description><identifier>ISSN: 0168-6496</identifier><identifier>EISSN: 1574-6941</identifier><identifier>DOI: 10.1016/j.femsec.2005.01.013</identifier><identifier>PMID: 16329952</identifier><language>eng</language><publisher>Oxford, UK: Elsevier B.V</publisher><subject>Agricultural management ; Agrochemicals ; Bacteria ; Bacteria - genetics ; Bacterial automated ribosomal intergenic spacer analysis ; Bacteriology ; Biological and medical sciences ; Canonical correspondence analysis ; Communities ; Community structure ; DNA Fingerprinting ; DNA, Bacterial - analysis ; DNA, Bacterial - genetics ; DNA, Ribosomal Spacer - analysis ; Ecology ; Fundamental and applied biological sciences. Psychology ; Genetic fingerprinting ; Grasslands ; Hydrogen-Ion Concentration ; Improvement ; Ireland ; Microbial activity ; Microbiology ; Microorganisms ; Miscellaneous ; Nitrogen - analysis ; Organic chemistry ; Phosphorus - analysis ; Plant species ; Poaceae ; Potassium - analysis ; Seasonal variations ; Seasonality ; Seasons ; Seeding ; Soil - analysis ; Soil chemistry ; Soil improvement ; Soil investigations ; Soil lime ; Soil Microbiology ; Soil microorganisms ; Soil structure ; Soils ; Upland grassland soils</subject><ispartof>FEMS microbiology ecology, 2005-08, Vol.53 (3), p.329-337</ispartof><rights>2005 Federation of European Microbiological Societies</rights><rights>2005 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved 2005</rights><rights>2005 INIST-CNRS</rights><rights>2005 Federation of European Microbiological Societies. Published by Elsevier B.V. All rights reserved</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c6819-74a057989f61ebd6f36215a72edbdcb2c737d019217b77425c94e7aa2787d7453</citedby><cites>FETCH-LOGICAL-c6819-74a057989f61ebd6f36215a72edbdcb2c737d019217b77425c94e7aa2787d7453</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1016%2Fj.femsec.2005.01.013$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1016%2Fj.femsec.2005.01.013$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>315,781,785,1418,27929,27930,45579,45580</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=16951487$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16329952$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kennedy, Nabla M.</creatorcontrib><creatorcontrib>Gleeson, Deirdre E.</creatorcontrib><creatorcontrib>Connolly, John</creatorcontrib><creatorcontrib>Clipson, Nicholas J.W.</creatorcontrib><title>Seasonal and management influences on bacterial community structure in an upland grassland soil</title><title>FEMS microbiology ecology</title><addtitle>FEMS Microbiol Ecol</addtitle><description>Floristically diverse
Nardo–Galion upland grasslands are common in Ireland and the UK and are valuable in agricultural, environmental and ecological terms. Under improvement (inputs of lime, fertiliser and re-seeding), they convert to mesotrophic grassland containing very few plant species. The effects of upland grassland improvement and seasonality on soil microbial communities were investigated at an upland site. Samples were taken at five times in one year in order to observe seasonal trends, and bacterial community structure was monitored using automated ribosomal intergenic spacer analysis (ARISA), a DNA-fingerprinting approach. Differences in soil chemistry and bacterial community structure between unimproved and improved grassland soils were noted. Season was also found to cause mild fluctuations in bacterial community structure, with soil samples from colder months (October and December) more correlated with change in ribotype profiles than samples from warmer months. However, for the majority of seasons clear differences in bacterial community structures from unimproved and improved soils could be seen, indicating seasonal influences did not obscure effects associated with improvement.</description><subject>Agricultural management</subject><subject>Agrochemicals</subject><subject>Bacteria</subject><subject>Bacteria - genetics</subject><subject>Bacterial automated ribosomal intergenic spacer analysis</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>Canonical correspondence analysis</subject><subject>Communities</subject><subject>Community structure</subject><subject>DNA Fingerprinting</subject><subject>DNA, Bacterial - analysis</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal Spacer - analysis</subject><subject>Ecology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetic fingerprinting</subject><subject>Grasslands</subject><subject>Hydrogen-Ion Concentration</subject><subject>Improvement</subject><subject>Ireland</subject><subject>Microbial activity</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Miscellaneous</subject><subject>Nitrogen - analysis</subject><subject>Organic chemistry</subject><subject>Phosphorus - analysis</subject><subject>Plant species</subject><subject>Poaceae</subject><subject>Potassium - analysis</subject><subject>Seasonal variations</subject><subject>Seasonality</subject><subject>Seasons</subject><subject>Seeding</subject><subject>Soil - analysis</subject><subject>Soil chemistry</subject><subject>Soil improvement</subject><subject>Soil investigations</subject><subject>Soil lime</subject><subject>Soil Microbiology</subject><subject>Soil microorganisms</subject><subject>Soil structure</subject><subject>Soils</subject><subject>Upland grassland soils</subject><issn>0168-6496</issn><issn>1574-6941</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkk9rFTEUxYNY7LP6DUQGRHfzmmTydyNIabXQ0oW6DpnMnZLHzOSZTCrv25txHigubOFCsvidc-_NCUJvCN4STMT5btvDmMBtKcZ8i0mp5hnaEC5ZLTQjz9GmYKoWTItT9DKlHcaENwy_QKdENFRrTjfIfAWbwmSHyk5dNdrJ3sMI01z5qR8yTA5SFaaqtW6G6Avmwjjmyc-HKs0xuzlHKGxRV3k_LB730ab0-5aCH16hk94OCV4fzzP0_ery28WX-ubu8_XFp5vaCUV0LZnFXGqle0Gg7UTfCEq4lRS6tnMtdbKRHSaaEtlKySh3moG0lkolO8l4c4Y-rL77GH5kSLMZfXIwlEEg5GSEUkJyJh8FSXFbGj0OMsmplLiA7_4BdyHH8qTJ0AZLooTCy4BspVwMKUXozT760caDIdgsgZqdWQM1S6AGk1JNkb09mud2hO6P6JhgAd4fAZucHfpoJ-fTX5zmhKllb7VyP_0Ahyc1N1eXt6VLkZ6v0pD3T53646qAEvmDh2iS88tn6nwEN5su-P8b_ALjj-Al</recordid><startdate>200508</startdate><enddate>200508</enddate><creator>Kennedy, Nabla M.</creator><creator>Gleeson, Deirdre E.</creator><creator>Connolly, John</creator><creator>Clipson, Nicholas J.W.</creator><general>Elsevier B.V</general><general>Blackwell Publishing Ltd</general><general>Blackwell</general><general>Oxford University Press</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7ST</scope><scope>SOI</scope><scope>7X8</scope></search><sort><creationdate>200508</creationdate><title>Seasonal and management influences on bacterial community structure in an upland grassland soil</title><author>Kennedy, Nabla M. ; Gleeson, Deirdre E. ; Connolly, John ; Clipson, Nicholas J.W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c6819-74a057989f61ebd6f36215a72edbdcb2c737d019217b77425c94e7aa2787d7453</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Agricultural management</topic><topic>Agrochemicals</topic><topic>Bacteria</topic><topic>Bacteria - genetics</topic><topic>Bacterial automated ribosomal intergenic spacer analysis</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>Canonical correspondence analysis</topic><topic>Communities</topic><topic>Community structure</topic><topic>DNA Fingerprinting</topic><topic>DNA, Bacterial - analysis</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal Spacer - analysis</topic><topic>Ecology</topic><topic>Fundamental and applied biological sciences. 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Nardo–Galion upland grasslands are common in Ireland and the UK and are valuable in agricultural, environmental and ecological terms. Under improvement (inputs of lime, fertiliser and re-seeding), they convert to mesotrophic grassland containing very few plant species. The effects of upland grassland improvement and seasonality on soil microbial communities were investigated at an upland site. Samples were taken at five times in one year in order to observe seasonal trends, and bacterial community structure was monitored using automated ribosomal intergenic spacer analysis (ARISA), a DNA-fingerprinting approach. Differences in soil chemistry and bacterial community structure between unimproved and improved grassland soils were noted. Season was also found to cause mild fluctuations in bacterial community structure, with soil samples from colder months (October and December) more correlated with change in ribotype profiles than samples from warmer months. However, for the majority of seasons clear differences in bacterial community structures from unimproved and improved soils could be seen, indicating seasonal influences did not obscure effects associated with improvement.</abstract><cop>Oxford, UK</cop><pub>Elsevier B.V</pub><pmid>16329952</pmid><doi>10.1016/j.femsec.2005.01.013</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | FEMS microbiology ecology, 2005-08, Vol.53 (3), p.329-337 |
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| source | Wiley Online Library - AutoHoldings Journals; MEDLINE; Access via Oxford University Press (Open Access Collection); Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Agricultural management Agrochemicals Bacteria Bacteria - genetics Bacterial automated ribosomal intergenic spacer analysis Bacteriology Biological and medical sciences Canonical correspondence analysis Communities Community structure DNA Fingerprinting DNA, Bacterial - analysis DNA, Bacterial - genetics DNA, Ribosomal Spacer - analysis Ecology Fundamental and applied biological sciences. Psychology Genetic fingerprinting Grasslands Hydrogen-Ion Concentration Improvement Ireland Microbial activity Microbiology Microorganisms Miscellaneous Nitrogen - analysis Organic chemistry Phosphorus - analysis Plant species Poaceae Potassium - analysis Seasonal variations Seasonality Seasons Seeding Soil - analysis Soil chemistry Soil improvement Soil investigations Soil lime Soil Microbiology Soil microorganisms Soil structure Soils Upland grassland soils |
| title | Seasonal and management influences on bacterial community structure in an upland grassland soil |
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