Simultaneous phase correction and SENSE reconstruction for navigated multi-shot DWI with non-cartesian k-space sampling
Phase‐navigated multi‐shot acquisition and parallel imaging are two techniques that have been applied to diffusion‐weighted imaging (DWI) to diminish distortions and to enhance spatial resolution. Specifically, sensitivity encoding (SENSE) has been combined with single‐shot echo planar imaging (EPI)...
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description | Phase‐navigated multi‐shot acquisition and parallel imaging are two techniques that have been applied to diffusion‐weighted imaging (DWI) to diminish distortions and to enhance spatial resolution. Specifically, sensitivity encoding (SENSE) has been combined with single‐shot echo planar imaging (EPI). Thus far, it has been difficult to apply parallel imaging methods, like SENSE, to multi‐shot DWI because motion‐induced phase error varies from shot to shot and interferes with sensitivity encoding. Although direct phase subtraction methods have been introduced to correct this phase error, they generally are not suitable for SENSE reconstruction, and they cannot remove all the motion artifacts even if the phase error is fully known. Here, an effective algorithm is proposed to correct the motion‐induced phase error using an iterative reconstruction. In this proposed conjugate‐gradient (CG) algorithm, the phase error is treated as an image encoding function. Given the complex perturbation terms, diffusion‐weighted images can be reconstructed using an augmented sensitivity map. The mathematical formulation and image reconstruction procedures of this algorithm are similar to the SENSE reconstruction. By defining a dynamic composite sensitivity, the CG phase correction method can be conveniently incorporated with SENSE reconstruction for the application of multi‐shot SENSE DWI. Effective phase correction and multi‐shot SENSE DWI (R = 1 to 3) are demonstrated on both simulated and in vivo data acquired with PROPELLER and SNAILS. Magn Reson Med, 2005. © 2005 Wiley‐Liss, Inc. |
doi_str_mv | 10.1002/mrm.20706 |
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Specifically, sensitivity encoding (SENSE) has been combined with single‐shot echo planar imaging (EPI). Thus far, it has been difficult to apply parallel imaging methods, like SENSE, to multi‐shot DWI because motion‐induced phase error varies from shot to shot and interferes with sensitivity encoding. Although direct phase subtraction methods have been introduced to correct this phase error, they generally are not suitable for SENSE reconstruction, and they cannot remove all the motion artifacts even if the phase error is fully known. Here, an effective algorithm is proposed to correct the motion‐induced phase error using an iterative reconstruction. In this proposed conjugate‐gradient (CG) algorithm, the phase error is treated as an image encoding function. Given the complex perturbation terms, diffusion‐weighted images can be reconstructed using an augmented sensitivity map. The mathematical formulation and image reconstruction procedures of this algorithm are similar to the SENSE reconstruction. By defining a dynamic composite sensitivity, the CG phase correction method can be conveniently incorporated with SENSE reconstruction for the application of multi‐shot SENSE DWI. Effective phase correction and multi‐shot SENSE DWI (R = 1 to 3) are demonstrated on both simulated and in vivo data acquired with PROPELLER and SNAILS. Magn Reson Med, 2005. © 2005 Wiley‐Liss, Inc.</description><identifier>ISSN: 0740-3194</identifier><identifier>EISSN: 1522-2594</identifier><identifier>DOI: 10.1002/mrm.20706</identifier><identifier>PMID: 16276497</identifier><language>eng</language><publisher>Hoboken: Wiley Subscription Services, Inc., A Wiley Company</publisher><subject>Algorithms ; Brain - anatomy & histology ; Diffusion Magnetic Resonance Imaging - methods ; diffusion tensor imaging ; Echo-Planar Imaging - methods ; high resolution DWI ; Humans ; Image Enhancement - methods ; Image Interpretation, Computer-Assisted - methods ; motion correction ; Movement ; multi-shot ; PROPELLER ; Reproducibility of Results ; Sample Size ; SENSE ; Sensitivity and Specificity ; Signal Processing, Computer-Assisted ; SNAILS</subject><ispartof>Magnetic resonance in medicine, 2005-12, Vol.54 (6), p.1412-1422</ispartof><rights>Copyright © 2005 Wiley‐Liss, Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3926-bd87919a6a38bd9f44c53e0ebeddca1b2ab0a1cd78cb1a57a468bd9f56473bef3</citedby><cites>FETCH-LOGICAL-c3926-bd87919a6a38bd9f44c53e0ebeddca1b2ab0a1cd78cb1a57a468bd9f56473bef3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fmrm.20706$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fmrm.20706$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,1433,27924,27925,45574,45575,46409,46833</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16276497$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Chunlei</creatorcontrib><creatorcontrib>Moseley, Michael E.</creatorcontrib><creatorcontrib>Bammer, Roland</creatorcontrib><title>Simultaneous phase correction and SENSE reconstruction for navigated multi-shot DWI with non-cartesian k-space sampling</title><title>Magnetic resonance in medicine</title><addtitle>Magn. Reson. Med</addtitle><description>Phase‐navigated multi‐shot acquisition and parallel imaging are two techniques that have been applied to diffusion‐weighted imaging (DWI) to diminish distortions and to enhance spatial resolution. Specifically, sensitivity encoding (SENSE) has been combined with single‐shot echo planar imaging (EPI). Thus far, it has been difficult to apply parallel imaging methods, like SENSE, to multi‐shot DWI because motion‐induced phase error varies from shot to shot and interferes with sensitivity encoding. Although direct phase subtraction methods have been introduced to correct this phase error, they generally are not suitable for SENSE reconstruction, and they cannot remove all the motion artifacts even if the phase error is fully known. Here, an effective algorithm is proposed to correct the motion‐induced phase error using an iterative reconstruction. In this proposed conjugate‐gradient (CG) algorithm, the phase error is treated as an image encoding function. Given the complex perturbation terms, diffusion‐weighted images can be reconstructed using an augmented sensitivity map. The mathematical formulation and image reconstruction procedures of this algorithm are similar to the SENSE reconstruction. By defining a dynamic composite sensitivity, the CG phase correction method can be conveniently incorporated with SENSE reconstruction for the application of multi‐shot SENSE DWI. Effective phase correction and multi‐shot SENSE DWI (R = 1 to 3) are demonstrated on both simulated and in vivo data acquired with PROPELLER and SNAILS. Magn Reson Med, 2005. © 2005 Wiley‐Liss, Inc.</description><subject>Algorithms</subject><subject>Brain - anatomy & histology</subject><subject>Diffusion Magnetic Resonance Imaging - methods</subject><subject>diffusion tensor imaging</subject><subject>Echo-Planar Imaging - methods</subject><subject>high resolution DWI</subject><subject>Humans</subject><subject>Image Enhancement - methods</subject><subject>Image Interpretation, Computer-Assisted - methods</subject><subject>motion correction</subject><subject>Movement</subject><subject>multi-shot</subject><subject>PROPELLER</subject><subject>Reproducibility of Results</subject><subject>Sample Size</subject><subject>SENSE</subject><subject>Sensitivity and Specificity</subject><subject>Signal Processing, Computer-Assisted</subject><subject>SNAILS</subject><issn>0740-3194</issn><issn>1522-2594</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1v1DAQhi0EokvhwB9APiFxSOuv2PERtctSaVskFlhu1sRxuqb5wnZY-u_JNgucEKeRZp55pJkXoZeUnFFC2Hkb2jNGFJGP0ILmjGUs1-IxWhAlSMapFifoWYzfCCFaK_EUnVDJlBRaLdB-49uxSdC5fox42EF02PYhOJt832HoKrxZ3myWeOr0XUxhnAd1H3AHP_wtJFfhg8JncdcnfLm9wnufdrjru8xCSC566PBdFgewDkdoh8Z3t8_Rkxqa6F4c6yn6_G756eJ9tv6wurp4u84s10xmZVUoTTVI4EVZ6VoIm3NHXOmqygItGZQEqK1UYUsKuQIhH7hcCsVLV_NT9Hr2DqH_PrqYTOujdU0zX2xkUfDDt_4LMlLkWjE1gW9m0IY-xuBqMwTfQrg3lJhDHGaKwzzEMbGvjtKxbF31lzz-fwLOZ2DvG3f_b5O5_nj9W5nNGz4m9_PPBoQ7IxVXudnerMx2Jb9-WRNqtvwXtI-maQ</recordid><startdate>200512</startdate><enddate>200512</enddate><creator>Liu, Chunlei</creator><creator>Moseley, Michael E.</creator><creator>Bammer, Roland</creator><general>Wiley Subscription Services, Inc., A Wiley Company</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>200512</creationdate><title>Simultaneous phase correction and SENSE reconstruction for navigated multi-shot DWI with non-cartesian k-space sampling</title><author>Liu, Chunlei ; Moseley, Michael E. ; Bammer, Roland</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3926-bd87919a6a38bd9f44c53e0ebeddca1b2ab0a1cd78cb1a57a468bd9f56473bef3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Algorithms</topic><topic>Brain - anatomy & histology</topic><topic>Diffusion Magnetic Resonance Imaging - methods</topic><topic>diffusion tensor imaging</topic><topic>Echo-Planar Imaging - methods</topic><topic>high resolution DWI</topic><topic>Humans</topic><topic>Image Enhancement - methods</topic><topic>Image Interpretation, Computer-Assisted - methods</topic><topic>motion correction</topic><topic>Movement</topic><topic>multi-shot</topic><topic>PROPELLER</topic><topic>Reproducibility of Results</topic><topic>Sample Size</topic><topic>SENSE</topic><topic>Sensitivity and Specificity</topic><topic>Signal Processing, Computer-Assisted</topic><topic>SNAILS</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Chunlei</creatorcontrib><creatorcontrib>Moseley, Michael E.</creatorcontrib><creatorcontrib>Bammer, Roland</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Magnetic resonance in medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Chunlei</au><au>Moseley, Michael E.</au><au>Bammer, Roland</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Simultaneous phase correction and SENSE reconstruction for navigated multi-shot DWI with non-cartesian k-space sampling</atitle><jtitle>Magnetic resonance in medicine</jtitle><addtitle>Magn. Reson. Med</addtitle><date>2005-12</date><risdate>2005</risdate><volume>54</volume><issue>6</issue><spage>1412</spage><epage>1422</epage><pages>1412-1422</pages><issn>0740-3194</issn><eissn>1522-2594</eissn><abstract>Phase‐navigated multi‐shot acquisition and parallel imaging are two techniques that have been applied to diffusion‐weighted imaging (DWI) to diminish distortions and to enhance spatial resolution. Specifically, sensitivity encoding (SENSE) has been combined with single‐shot echo planar imaging (EPI). Thus far, it has been difficult to apply parallel imaging methods, like SENSE, to multi‐shot DWI because motion‐induced phase error varies from shot to shot and interferes with sensitivity encoding. Although direct phase subtraction methods have been introduced to correct this phase error, they generally are not suitable for SENSE reconstruction, and they cannot remove all the motion artifacts even if the phase error is fully known. Here, an effective algorithm is proposed to correct the motion‐induced phase error using an iterative reconstruction. In this proposed conjugate‐gradient (CG) algorithm, the phase error is treated as an image encoding function. Given the complex perturbation terms, diffusion‐weighted images can be reconstructed using an augmented sensitivity map. The mathematical formulation and image reconstruction procedures of this algorithm are similar to the SENSE reconstruction. By defining a dynamic composite sensitivity, the CG phase correction method can be conveniently incorporated with SENSE reconstruction for the application of multi‐shot SENSE DWI. Effective phase correction and multi‐shot SENSE DWI (R = 1 to 3) are demonstrated on both simulated and in vivo data acquired with PROPELLER and SNAILS. Magn Reson Med, 2005. © 2005 Wiley‐Liss, Inc.</abstract><cop>Hoboken</cop><pub>Wiley Subscription Services, Inc., A Wiley Company</pub><pmid>16276497</pmid><doi>10.1002/mrm.20706</doi><tpages>11</tpages></addata></record> |
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subjects | Algorithms Brain - anatomy & histology Diffusion Magnetic Resonance Imaging - methods diffusion tensor imaging Echo-Planar Imaging - methods high resolution DWI Humans Image Enhancement - methods Image Interpretation, Computer-Assisted - methods motion correction Movement multi-shot PROPELLER Reproducibility of Results Sample Size SENSE Sensitivity and Specificity Signal Processing, Computer-Assisted SNAILS |
title | Simultaneous phase correction and SENSE reconstruction for navigated multi-shot DWI with non-cartesian k-space sampling |
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