Simulation of realistic abnormal SPECT brain perfusion images: application in semi-quantitative analysis
Simulation is useful in the validation of functional image analysis methods, particularly when considering the number of analysis techniques currently available lacking thorough validation. Problems exist with current simulation methods due to long run times or unrealistic results making it problema...
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Veröffentlicht in: | Physics in medicine & biology 2005-11, Vol.50 (22), p.5323-5338 |
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description | Simulation is useful in the validation of functional image analysis methods, particularly when considering the number of analysis techniques currently available lacking thorough validation. Problems exist with current simulation methods due to long run times or unrealistic results making it problematic to generate complete datasets. A method is presented for simulating known abnormalities within normal brain SPECT images using a measured point spread function (PSF), and incorporating a stereotactic atlas of the brain for anatomical positioning. This allows for the simulation of realistic images through the use of prior information regarding disease progression. SPECT images of cerebral perfusion have been generated consisting of a control database and a group of simulated abnormal subjects that are to be used in a UK audit of analysis methods. The abnormality is defined in the stereotactic space, then transformed to the individual subject space, convolved with a measured PSF and removed from the normal subject image. The dataset was analysed using SPM99 (Wellcome Department of Imaging Neuroscience, University College, London) and the MarsBaR volume of interest (VOI) analysis toolbox. The results were evaluated by comparison with the known ground truth. The analysis showed improvement when using a smoothing kernel equal to system resolution over the slightly larger kernel used routinely. Significant correlation was found between effective volume of a simulated abnormality and the detected size using SPM99. Improvements in VOI analysis sensitivity were found when using the region median over the region mean. The method and dataset provide an efficient methodology for use in the comparison and cross validation of semi-quantitative analysis methods in brain SPECT, and allow the optimization of analysis parameters. |
doi_str_mv | 10.1088/0031-9155/50/22/008 |
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Problems exist with current simulation methods due to long run times or unrealistic results making it problematic to generate complete datasets. A method is presented for simulating known abnormalities within normal brain SPECT images using a measured point spread function (PSF), and incorporating a stereotactic atlas of the brain for anatomical positioning. This allows for the simulation of realistic images through the use of prior information regarding disease progression. SPECT images of cerebral perfusion have been generated consisting of a control database and a group of simulated abnormal subjects that are to be used in a UK audit of analysis methods. The abnormality is defined in the stereotactic space, then transformed to the individual subject space, convolved with a measured PSF and removed from the normal subject image. The dataset was analysed using SPM99 (Wellcome Department of Imaging Neuroscience, University College, London) and the MarsBaR volume of interest (VOI) analysis toolbox. The results were evaluated by comparison with the known ground truth. The analysis showed improvement when using a smoothing kernel equal to system resolution over the slightly larger kernel used routinely. Significant correlation was found between effective volume of a simulated abnormality and the detected size using SPM99. Improvements in VOI analysis sensitivity were found when using the region median over the region mean. The method and dataset provide an efficient methodology for use in the comparison and cross validation of semi-quantitative analysis methods in brain SPECT, and allow the optimization of analysis parameters.</description><identifier>ISSN: 0031-9155</identifier><identifier>EISSN: 1361-6560</identifier><identifier>DOI: 10.1088/0031-9155/50/22/008</identifier><identifier>PMID: 16264256</identifier><language>eng</language><publisher>England: IOP Publishing</publisher><subject>Adult ; Aged ; Aged, 80 and over ; Brain - abnormalities ; Brain - diagnostic imaging ; Computer Simulation ; Databases, Factual ; Female ; Humans ; Male ; Middle Aged ; Perfusion ; Radiopharmaceuticals ; Reproducibility of Results ; Technetium Tc 99m Exametazime ; Tomography, Emission-Computed, Single-Photon - methods</subject><ispartof>Physics in medicine & biology, 2005-11, Vol.50 (22), p.5323-5338</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c377t-52da43e10c3915cc36ab110537b8312414c8f3d69020f2d4bf12687852d11fdf3</citedby><cites>FETCH-LOGICAL-c377t-52da43e10c3915cc36ab110537b8312414c8f3d69020f2d4bf12687852d11fdf3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://iopscience.iop.org/article/10.1088/0031-9155/50/22/008/pdf$$EPDF$$P50$$Giop$$H</linktopdf><link.rule.ids>314,780,784,27924,27925,53830,53910</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16264256$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ward, T</creatorcontrib><creatorcontrib>Fleming, J S</creatorcontrib><creatorcontrib>Hoffmann, S M A</creatorcontrib><creatorcontrib>Kemp, P M</creatorcontrib><title>Simulation of realistic abnormal SPECT brain perfusion images: application in semi-quantitative analysis</title><title>Physics in medicine & biology</title><addtitle>Phys Med Biol</addtitle><description>Simulation is useful in the validation of functional image analysis methods, particularly when considering the number of analysis techniques currently available lacking thorough validation. Problems exist with current simulation methods due to long run times or unrealistic results making it problematic to generate complete datasets. A method is presented for simulating known abnormalities within normal brain SPECT images using a measured point spread function (PSF), and incorporating a stereotactic atlas of the brain for anatomical positioning. This allows for the simulation of realistic images through the use of prior information regarding disease progression. SPECT images of cerebral perfusion have been generated consisting of a control database and a group of simulated abnormal subjects that are to be used in a UK audit of analysis methods. The abnormality is defined in the stereotactic space, then transformed to the individual subject space, convolved with a measured PSF and removed from the normal subject image. The dataset was analysed using SPM99 (Wellcome Department of Imaging Neuroscience, University College, London) and the MarsBaR volume of interest (VOI) analysis toolbox. The results were evaluated by comparison with the known ground truth. The analysis showed improvement when using a smoothing kernel equal to system resolution over the slightly larger kernel used routinely. Significant correlation was found between effective volume of a simulated abnormality and the detected size using SPM99. Improvements in VOI analysis sensitivity were found when using the region median over the region mean. The method and dataset provide an efficient methodology for use in the comparison and cross validation of semi-quantitative analysis methods in brain SPECT, and allow the optimization of analysis parameters.</description><subject>Adult</subject><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Brain - abnormalities</subject><subject>Brain - diagnostic imaging</subject><subject>Computer Simulation</subject><subject>Databases, Factual</subject><subject>Female</subject><subject>Humans</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Perfusion</subject><subject>Radiopharmaceuticals</subject><subject>Reproducibility of Results</subject><subject>Technetium Tc 99m Exametazime</subject><subject>Tomography, Emission-Computed, Single-Photon - methods</subject><issn>0031-9155</issn><issn>1361-6560</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kE1LAzEQhoMotlZ_gSB78iBsm0k2aepNil8gKLSeQzabaGS_muwK_nuztuhB8TTM5HnfmbwInQKeAhZihjGFdAGMzRieERJ7sYfGQDmknHG8j8bfxAgdhfCGMYAg2SEaASc8I4yP0evKVX2pOtfUSWMTb1TpQud0ovK68ZUqk9XT9XKd5F65OmmNt30YWFepFxMuE9W2pdNbfQSCqVy66VXduS4O302ialV-BBeO0YFVZTAnuzpBzzfX6-Vd-vB4e7-8ekg1nc-7lJFCZdQA1jQerjXlKgfAjM5zQYFkkGlhacEXmGBLiiy3QLiYi6gDsIWlE3S-9W19s-lN6GTlgjZlqWrT9EFGmC0wFRGkW1D7JgRvrGx9_JX_kIDlELAc4pNDfJJhSUjsB9XZzr7PK1P8aHaJRuBiC7im_X79w0m2X8dOf8P_rf8EkF-RUg</recordid><startdate>20051121</startdate><enddate>20051121</enddate><creator>Ward, T</creator><creator>Fleming, J S</creator><creator>Hoffmann, S M A</creator><creator>Kemp, P M</creator><general>IOP Publishing</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20051121</creationdate><title>Simulation of realistic abnormal SPECT brain perfusion images: application in semi-quantitative analysis</title><author>Ward, T ; Fleming, J S ; Hoffmann, S M A ; Kemp, P M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c377t-52da43e10c3915cc36ab110537b8312414c8f3d69020f2d4bf12687852d11fdf3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Brain - abnormalities</topic><topic>Brain - diagnostic imaging</topic><topic>Computer Simulation</topic><topic>Databases, Factual</topic><topic>Female</topic><topic>Humans</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Perfusion</topic><topic>Radiopharmaceuticals</topic><topic>Reproducibility of Results</topic><topic>Technetium Tc 99m Exametazime</topic><topic>Tomography, Emission-Computed, Single-Photon - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ward, T</creatorcontrib><creatorcontrib>Fleming, J S</creatorcontrib><creatorcontrib>Hoffmann, S M A</creatorcontrib><creatorcontrib>Kemp, P M</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Physics in medicine & biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ward, T</au><au>Fleming, J S</au><au>Hoffmann, S M A</au><au>Kemp, P M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Simulation of realistic abnormal SPECT brain perfusion images: application in semi-quantitative analysis</atitle><jtitle>Physics in medicine & biology</jtitle><addtitle>Phys Med Biol</addtitle><date>2005-11-21</date><risdate>2005</risdate><volume>50</volume><issue>22</issue><spage>5323</spage><epage>5338</epage><pages>5323-5338</pages><issn>0031-9155</issn><eissn>1361-6560</eissn><abstract>Simulation is useful in the validation of functional image analysis methods, particularly when considering the number of analysis techniques currently available lacking thorough validation. Problems exist with current simulation methods due to long run times or unrealistic results making it problematic to generate complete datasets. A method is presented for simulating known abnormalities within normal brain SPECT images using a measured point spread function (PSF), and incorporating a stereotactic atlas of the brain for anatomical positioning. This allows for the simulation of realistic images through the use of prior information regarding disease progression. SPECT images of cerebral perfusion have been generated consisting of a control database and a group of simulated abnormal subjects that are to be used in a UK audit of analysis methods. The abnormality is defined in the stereotactic space, then transformed to the individual subject space, convolved with a measured PSF and removed from the normal subject image. The dataset was analysed using SPM99 (Wellcome Department of Imaging Neuroscience, University College, London) and the MarsBaR volume of interest (VOI) analysis toolbox. The results were evaluated by comparison with the known ground truth. The analysis showed improvement when using a smoothing kernel equal to system resolution over the slightly larger kernel used routinely. Significant correlation was found between effective volume of a simulated abnormality and the detected size using SPM99. Improvements in VOI analysis sensitivity were found when using the region median over the region mean. The method and dataset provide an efficient methodology for use in the comparison and cross validation of semi-quantitative analysis methods in brain SPECT, and allow the optimization of analysis parameters.</abstract><cop>England</cop><pub>IOP Publishing</pub><pmid>16264256</pmid><doi>10.1088/0031-9155/50/22/008</doi><tpages>16</tpages></addata></record> |
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subjects | Adult Aged Aged, 80 and over Brain - abnormalities Brain - diagnostic imaging Computer Simulation Databases, Factual Female Humans Male Middle Aged Perfusion Radiopharmaceuticals Reproducibility of Results Technetium Tc 99m Exametazime Tomography, Emission-Computed, Single-Photon - methods |
title | Simulation of realistic abnormal SPECT brain perfusion images: application in semi-quantitative analysis |
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