Burkholderia silvatlantica sp. nov., a diazotrophic bacterium associated with sugar cane and maize
1 Universidade Federal Rural do Rio de Janeiro, km 45, BR 465, C.P. 74505, Seropédica, Rio de Janeiro, Brazil 2 Embrapa Agrobiology, km 47, BR 465, C.P. 74505, Seropédica, Rio de Janeiro, Brazil 3 Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Ap. Postal 565-A, Cuernavaca, Mo...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2006-08, Vol.56 (8), p.1931-1937 |
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| creator | Perin, L Martinez-Aguilar, L Paredes-Valdez, G Baldani, J. I Estrada-de los Santos, P Reis, V. M Caballero-Mellado, J |
| description | 1 Universidade Federal Rural do Rio de Janeiro, km 45, BR 465, C.P. 74505, Seropédica, Rio de Janeiro, Brazil
2 Embrapa Agrobiology, km 47, BR 465, C.P. 74505, Seropédica, Rio de Janeiro, Brazil
3 Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Ap. Postal 565-A, Cuernavaca, Morelos, Mexico
Correspondence J. Caballero-Mellado jesuscab{at}cifn.unam.mx
In a previous study, nitrogen-fixing isolates were recovered from the rhizosphere of maize and from surface-sterilized leaves of sugar cane cultivated in Rio de Janeiro, Brazil. On the basis of 16S rRNA gene sequence similarities, these isolates were identified as belonging to the genus Burkholderia , and whole-cell-protein profiles demonstrated that they are closely related to each other. In the present study, novel isolates were recovered from the roots of different sugar-cane varieties cultivated in diverse geographical regions of Brazil. Twenty-one nitrogen-fixing isolates were analysed using polyphasic taxonomy criteria, including DNADNA relatedness, 16S rRNA gene sequence similarities, fatty acid profiles, whole-cell-protein patterns and multilocus enzyme electrophoresis profiles, as well as morphological, physiological and biochemical characterization. The analysis confirmed that these isolates belong to a novel species within the genus Burkholderia , for which the name Burkholderia silvatlantica sp. nov. is proposed. The type strain, SRMrh-20 T (=LMG 23149 T =ATCC BAA-1244 T ), was isolated from the rhizosphere of maize var. Avantis A2345 cultivated in Seropédica, Rio de Janeiro.
Abbreviations: ARDRA, amplified rDNA restriction analysis; MLEE, multilocus enzyme electrophoresis
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains SRMrh-20 T , SRCL-18, SRMrh-85 and PPCR-2 are AY965240 AY965243, respectively.
A dendrogram derived from MLEE and SDS-PAGE showing whole-cell protein profiles for the novel strains, N 2 -fixing Burkholderia species and B. sacchari are available as supplementary figures in IJSEM Online.
These authors contributed equally to this work. |
| doi_str_mv | 10.1099/ijs.0.64362-0 |
| format | Article |
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2 Embrapa Agrobiology, km 47, BR 465, C.P. 74505, Seropédica, Rio de Janeiro, Brazil
3 Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Ap. Postal 565-A, Cuernavaca, Morelos, Mexico
Correspondence J. Caballero-Mellado jesuscab{at}cifn.unam.mx
In a previous study, nitrogen-fixing isolates were recovered from the rhizosphere of maize and from surface-sterilized leaves of sugar cane cultivated in Rio de Janeiro, Brazil. On the basis of 16S rRNA gene sequence similarities, these isolates were identified as belonging to the genus Burkholderia , and whole-cell-protein profiles demonstrated that they are closely related to each other. In the present study, novel isolates were recovered from the roots of different sugar-cane varieties cultivated in diverse geographical regions of Brazil. Twenty-one nitrogen-fixing isolates were analysed using polyphasic taxonomy criteria, including DNADNA relatedness, 16S rRNA gene sequence similarities, fatty acid profiles, whole-cell-protein patterns and multilocus enzyme electrophoresis profiles, as well as morphological, physiological and biochemical characterization. The analysis confirmed that these isolates belong to a novel species within the genus Burkholderia , for which the name Burkholderia silvatlantica sp. nov. is proposed. The type strain, SRMrh-20 T (=LMG 23149 T =ATCC BAA-1244 T ), was isolated from the rhizosphere of maize var. Avantis A2345 cultivated in Seropédica, Rio de Janeiro.
Abbreviations: ARDRA, amplified rDNA restriction analysis; MLEE, multilocus enzyme electrophoresis
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains SRMrh-20 T , SRCL-18, SRMrh-85 and PPCR-2 are AY965240 AY965243, respectively.
A dendrogram derived from MLEE and SDS-PAGE showing whole-cell protein profiles for the novel strains, N 2 -fixing Burkholderia species and B. sacchari are available as supplementary figures in IJSEM Online.
These authors contributed equally to this work.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.64362-0</identifier><identifier>PMID: 16902033</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Agronomy. Soil science and plant productions ; Bacterial Proteins - analysis ; Bacteriology ; Biological and medical sciences ; Brazil ; Burkholderia ; Burkholderia - chemistry ; Burkholderia - classification ; Burkholderia - isolation & purification ; Burkholderia - physiology ; DNA, Bacterial - genetics ; Economic plant physiology ; Fatty Acids - analysis ; Fundamental and applied biological sciences. Psychology ; Microbiology ; Molecular Sequence Data ; Nucleic Acid Hybridization ; Phylogeny ; Plant Roots - microbiology ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; Saccharum - microbiology ; Sequence Homology, Nucleic Acid ; Species Specificity ; Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...) ; Systematics ; Zea mays ; Zea mays - microbiology</subject><ispartof>International journal of systematic and evolutionary microbiology, 2006-08, Vol.56 (8), p.1931-1937</ispartof><rights>2006 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c468t-dd1216cb821623d79a303a2627ea918fa590e404938690cc97bf76999343a3c3</citedby><cites>FETCH-LOGICAL-c468t-dd1216cb821623d79a303a2627ea918fa590e404938690cc97bf76999343a3c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,3747,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18036316$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16902033$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Perin, L</creatorcontrib><creatorcontrib>Martinez-Aguilar, L</creatorcontrib><creatorcontrib>Paredes-Valdez, G</creatorcontrib><creatorcontrib>Baldani, J. I</creatorcontrib><creatorcontrib>Estrada-de los Santos, P</creatorcontrib><creatorcontrib>Reis, V. M</creatorcontrib><creatorcontrib>Caballero-Mellado, J</creatorcontrib><title>Burkholderia silvatlantica sp. nov., a diazotrophic bacterium associated with sugar cane and maize</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Universidade Federal Rural do Rio de Janeiro, km 45, BR 465, C.P. 74505, Seropédica, Rio de Janeiro, Brazil
2 Embrapa Agrobiology, km 47, BR 465, C.P. 74505, Seropédica, Rio de Janeiro, Brazil
3 Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Ap. Postal 565-A, Cuernavaca, Morelos, Mexico
Correspondence J. Caballero-Mellado jesuscab{at}cifn.unam.mx
In a previous study, nitrogen-fixing isolates were recovered from the rhizosphere of maize and from surface-sterilized leaves of sugar cane cultivated in Rio de Janeiro, Brazil. On the basis of 16S rRNA gene sequence similarities, these isolates were identified as belonging to the genus Burkholderia , and whole-cell-protein profiles demonstrated that they are closely related to each other. In the present study, novel isolates were recovered from the roots of different sugar-cane varieties cultivated in diverse geographical regions of Brazil. Twenty-one nitrogen-fixing isolates were analysed using polyphasic taxonomy criteria, including DNADNA relatedness, 16S rRNA gene sequence similarities, fatty acid profiles, whole-cell-protein patterns and multilocus enzyme electrophoresis profiles, as well as morphological, physiological and biochemical characterization. The analysis confirmed that these isolates belong to a novel species within the genus Burkholderia , for which the name Burkholderia silvatlantica sp. nov. is proposed. The type strain, SRMrh-20 T (=LMG 23149 T =ATCC BAA-1244 T ), was isolated from the rhizosphere of maize var. Avantis A2345 cultivated in Seropédica, Rio de Janeiro.
Abbreviations: ARDRA, amplified rDNA restriction analysis; MLEE, multilocus enzyme electrophoresis
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains SRMrh-20 T , SRCL-18, SRMrh-85 and PPCR-2 are AY965240 AY965243, respectively.
A dendrogram derived from MLEE and SDS-PAGE showing whole-cell protein profiles for the novel strains, N 2 -fixing Burkholderia species and B. sacchari are available as supplementary figures in IJSEM Online.
These authors contributed equally to this work.</description><subject>Agronomy. Soil science and plant productions</subject><subject>Bacterial Proteins - analysis</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>Brazil</subject><subject>Burkholderia</subject><subject>Burkholderia - chemistry</subject><subject>Burkholderia - classification</subject><subject>Burkholderia - isolation & purification</subject><subject>Burkholderia - physiology</subject><subject>DNA, Bacterial - genetics</subject><subject>Economic plant physiology</subject><subject>Fatty Acids - analysis</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Nucleic Acid Hybridization</subject><subject>Phylogeny</subject><subject>Plant Roots - microbiology</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Saccharum - microbiology</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Species Specificity</subject><subject>Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...)</subject><subject>Systematics</subject><subject>Zea mays</subject><subject>Zea mays - microbiology</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkDtP7DAQhS10Ee-SFrm5iIKEcZw4cQmIl4REQ29NHGdjbhIvdgKCX4-XXV1KmvGM9fnM8SHkmEHKQMoL-xJSSEXORZbAFtljuRBJATz_87_PxC7ZD-EFIF4A7JBdJiRkwPkeqa9m_69zfWO8RRps_4ZTj-NkdZyWKR3dW3pOkTYWP93k3bKzmtaop8jPA8UQnLY4mYa-26mjYV6gpxpHQ3Fs6ID20xyS7Rb7YI425wF5vr15vr5PHp_uHq4vHxOdi2pKmoZlTOi6ijXjTSmRA8dMZKVByaoWCwkmh1zyKrrXWpZ1WwopJc85cs0PyOladund62zCpAYbtOnjb4ybgxJVGV9C9ivIZFFUhRARTNag9i4Eb1q19HZA_6EYqFX4KoavQH2HryDyJxvhuR5M80Nv0o7A3w2AQWPfehy1DT9cBVxwtlp8tuY6u-jerTdqYcbBRhu1daulhVBV9MkZ_wLR_ZqE</recordid><startdate>20060801</startdate><enddate>20060801</enddate><creator>Perin, L</creator><creator>Martinez-Aguilar, L</creator><creator>Paredes-Valdez, G</creator><creator>Baldani, J. I</creator><creator>Estrada-de los Santos, P</creator><creator>Reis, V. M</creator><creator>Caballero-Mellado, J</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope></search><sort><creationdate>20060801</creationdate><title>Burkholderia silvatlantica sp. nov., a diazotrophic bacterium associated with sugar cane and maize</title><author>Perin, L ; Martinez-Aguilar, L ; Paredes-Valdez, G ; Baldani, J. I ; Estrada-de los Santos, P ; Reis, V. 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Psychology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Nucleic Acid Hybridization</topic><topic>Phylogeny</topic><topic>Plant Roots - microbiology</topic><topic>RNA, Bacterial - genetics</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Saccharum - microbiology</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>Species Specificity</topic><topic>Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...)</topic><topic>Systematics</topic><topic>Zea mays</topic><topic>Zea mays - microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Perin, L</creatorcontrib><creatorcontrib>Martinez-Aguilar, L</creatorcontrib><creatorcontrib>Paredes-Valdez, G</creatorcontrib><creatorcontrib>Baldani, J. I</creatorcontrib><creatorcontrib>Estrada-de los Santos, P</creatorcontrib><creatorcontrib>Reis, V. 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M</au><au>Caballero-Mellado, J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Burkholderia silvatlantica sp. nov., a diazotrophic bacterium associated with sugar cane and maize</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2006-08-01</date><risdate>2006</risdate><volume>56</volume><issue>8</issue><spage>1931</spage><epage>1937</epage><pages>1931-1937</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Universidade Federal Rural do Rio de Janeiro, km 45, BR 465, C.P. 74505, Seropédica, Rio de Janeiro, Brazil
2 Embrapa Agrobiology, km 47, BR 465, C.P. 74505, Seropédica, Rio de Janeiro, Brazil
3 Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Ap. Postal 565-A, Cuernavaca, Morelos, Mexico
Correspondence J. Caballero-Mellado jesuscab{at}cifn.unam.mx
In a previous study, nitrogen-fixing isolates were recovered from the rhizosphere of maize and from surface-sterilized leaves of sugar cane cultivated in Rio de Janeiro, Brazil. On the basis of 16S rRNA gene sequence similarities, these isolates were identified as belonging to the genus Burkholderia , and whole-cell-protein profiles demonstrated that they are closely related to each other. In the present study, novel isolates were recovered from the roots of different sugar-cane varieties cultivated in diverse geographical regions of Brazil. Twenty-one nitrogen-fixing isolates were analysed using polyphasic taxonomy criteria, including DNADNA relatedness, 16S rRNA gene sequence similarities, fatty acid profiles, whole-cell-protein patterns and multilocus enzyme electrophoresis profiles, as well as morphological, physiological and biochemical characterization. The analysis confirmed that these isolates belong to a novel species within the genus Burkholderia , for which the name Burkholderia silvatlantica sp. nov. is proposed. The type strain, SRMrh-20 T (=LMG 23149 T =ATCC BAA-1244 T ), was isolated from the rhizosphere of maize var. Avantis A2345 cultivated in Seropédica, Rio de Janeiro.
Abbreviations: ARDRA, amplified rDNA restriction analysis; MLEE, multilocus enzyme electrophoresis
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains SRMrh-20 T , SRCL-18, SRMrh-85 and PPCR-2 are AY965240 AY965243, respectively.
A dendrogram derived from MLEE and SDS-PAGE showing whole-cell protein profiles for the novel strains, N 2 -fixing Burkholderia species and B. sacchari are available as supplementary figures in IJSEM Online.
These authors contributed equally to this work.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>16902033</pmid><doi>10.1099/ijs.0.64362-0</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Agronomy. Soil science and plant productions Bacterial Proteins - analysis Bacteriology Biological and medical sciences Brazil Burkholderia Burkholderia - chemistry Burkholderia - classification Burkholderia - isolation & purification Burkholderia - physiology DNA, Bacterial - genetics Economic plant physiology Fatty Acids - analysis Fundamental and applied biological sciences. Psychology Microbiology Molecular Sequence Data Nucleic Acid Hybridization Phylogeny Plant Roots - microbiology RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics Saccharum - microbiology Sequence Homology, Nucleic Acid Species Specificity Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...) Systematics Zea mays Zea mays - microbiology |
| title | Burkholderia silvatlantica sp. nov., a diazotrophic bacterium associated with sugar cane and maize |
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