New candidate species most closely related to penguins
The phylogenetic position of the order Spenisciformes in Aves remains unclear despite several independent analyses based on morphological and molecular data. To address this issue, we determined the complete mtDNA sequence of rockhopper penguins. The mitochondrial genome, excluding the region from t...
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creator | Watanabe, Maiko Nikaido, Masato Tsuda, Tomi T. Kobayashi, Takanori Mindell, David Cao, Ying Okada, Norihiro Hasegawa, Masami |
description | The phylogenetic position of the order Spenisciformes in Aves remains unclear despite several independent analyses based on morphological and molecular data. To address this issue, we determined the complete mtDNA sequence of rockhopper penguins. The mitochondrial genome, excluding the region from the D-loop to 12SrRNA, was also sequenced for petrel, albatross, frigatebird, loon and grebe, which previous studies suggest are related to penguins. A maximum likelihood analysis of the phylogenetic placement of penguins with 23 birds, including 17 species whose mtDNA sequences were previously reported, suggested that storks are the closest extant relatives of penguins, with 78% and 56% bootstrap supports, depending on the choice of outgroup species. Thus, ciconiiform birds constitute new candidates as the closest extant relatives of penguins (previously proposed candidates were either gaviiform, podicipediform, or procellariiform birds). In addition to this new evidence, our analysis gave evidence to some of ambiguous relationships in the avian tree: our analysis supported a basal split between passerines and other neoavians within Neoaves, and rejected the monophyly of Falconiformes as well as that of loons and grebes. |
doi_str_mv | 10.1016/j.gene.2006.05.003 |
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To address this issue, we determined the complete mtDNA sequence of rockhopper penguins. The mitochondrial genome, excluding the region from the D-loop to 12SrRNA, was also sequenced for petrel, albatross, frigatebird, loon and grebe, which previous studies suggest are related to penguins. A maximum likelihood analysis of the phylogenetic placement of penguins with 23 birds, including 17 species whose mtDNA sequences were previously reported, suggested that storks are the closest extant relatives of penguins, with 78% and 56% bootstrap supports, depending on the choice of outgroup species. Thus, ciconiiform birds constitute new candidates as the closest extant relatives of penguins (previously proposed candidates were either gaviiform, podicipediform, or procellariiform birds). In addition to this new evidence, our analysis gave evidence to some of ambiguous relationships in the avian tree: our analysis supported a basal split between passerines and other neoavians within Neoaves, and rejected the monophyly of Falconiformes as well as that of loons and grebes.</description><identifier>ISSN: 0378-1119</identifier><identifier>EISSN: 1879-0038</identifier><identifier>DOI: 10.1016/j.gene.2006.05.003</identifier><identifier>PMID: 16806742</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Animals ; Base Sequence ; Birds - classification ; Birds - genetics ; Codon, Initiator ; Codon, Terminator ; Complete sequences of mitochondria ; DNA, Mitochondrial - genetics ; Falconiformes - classification ; Falconiformes - genetics ; Genes, Mitochondrial ; Genome ; Mitochondrial Proteins - genetics ; Phylogeny ; Species Specificity ; Spenisciformes ; Spheniscidae - classification ; Spheniscidae - genetics ; Storks</subject><ispartof>Gene, 2006-08, Vol.378, p.65-73</ispartof><rights>2006 Elsevier B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c429t-2aad60a8a4634bff9540a0773687ce87238f02f892d9fcd294376a97b3f3ae633</citedby><cites>FETCH-LOGICAL-c429t-2aad60a8a4634bff9540a0773687ce87238f02f892d9fcd294376a97b3f3ae633</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0378111906003192$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16806742$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Watanabe, Maiko</creatorcontrib><creatorcontrib>Nikaido, Masato</creatorcontrib><creatorcontrib>Tsuda, Tomi T.</creatorcontrib><creatorcontrib>Kobayashi, Takanori</creatorcontrib><creatorcontrib>Mindell, David</creatorcontrib><creatorcontrib>Cao, Ying</creatorcontrib><creatorcontrib>Okada, Norihiro</creatorcontrib><creatorcontrib>Hasegawa, Masami</creatorcontrib><title>New candidate species most closely related to penguins</title><title>Gene</title><addtitle>Gene</addtitle><description>The phylogenetic position of the order Spenisciformes in Aves remains unclear despite several independent analyses based on morphological and molecular data. To address this issue, we determined the complete mtDNA sequence of rockhopper penguins. The mitochondrial genome, excluding the region from the D-loop to 12SrRNA, was also sequenced for petrel, albatross, frigatebird, loon and grebe, which previous studies suggest are related to penguins. A maximum likelihood analysis of the phylogenetic placement of penguins with 23 birds, including 17 species whose mtDNA sequences were previously reported, suggested that storks are the closest extant relatives of penguins, with 78% and 56% bootstrap supports, depending on the choice of outgroup species. Thus, ciconiiform birds constitute new candidates as the closest extant relatives of penguins (previously proposed candidates were either gaviiform, podicipediform, or procellariiform birds). In addition to this new evidence, our analysis gave evidence to some of ambiguous relationships in the avian tree: our analysis supported a basal split between passerines and other neoavians within Neoaves, and rejected the monophyly of Falconiformes as well as that of loons and grebes.</description><subject>Animals</subject><subject>Base Sequence</subject><subject>Birds - classification</subject><subject>Birds - genetics</subject><subject>Codon, Initiator</subject><subject>Codon, Terminator</subject><subject>Complete sequences of mitochondria</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Falconiformes - classification</subject><subject>Falconiformes - genetics</subject><subject>Genes, Mitochondrial</subject><subject>Genome</subject><subject>Mitochondrial Proteins - genetics</subject><subject>Phylogeny</subject><subject>Species Specificity</subject><subject>Spenisciformes</subject><subject>Spheniscidae - classification</subject><subject>Spheniscidae - genetics</subject><subject>Storks</subject><issn>0378-1119</issn><issn>1879-0038</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkMtOwzAQRS0EoqXwAyxQVuwSxnbih8QGIV5SBRtYW649qVLlRZyA-ve4aiV2MJsZac69i0PIJYWMAhU3m2yNLWYMQGRQZAD8iMypkjqNpzomc-BSpZRSPSNnIWwgTlGwUzKjQoGQOZsT8YrfibOtr7wdMQk9ugpD0nRhTFzdBay3yYB1_Plk7JIe2_VUteGcnJS2Dnhx2Avy8fjwfv-cLt-eXu7vlqnLmR5TZq0XYJXNBc9XZamLHCxIyYWSDpVkXJXASqWZ16XzTOdcCqvlipfcouB8Qa73vf3QfU4YRtNUwWFd2xa7KRihhOaCqX9BqjmwQkAE2R50QxfCgKXph6qxw9ZQMDutZmN2Ws1Oq4HCRJcxdHVon1YN-t_IwWMEbvcARhlfFQ4mRI-tQ18N6Ebju-qv_h8mFoeQ</recordid><startdate>20060815</startdate><enddate>20060815</enddate><creator>Watanabe, Maiko</creator><creator>Nikaido, Masato</creator><creator>Tsuda, Tomi T.</creator><creator>Kobayashi, Takanori</creator><creator>Mindell, David</creator><creator>Cao, Ying</creator><creator>Okada, Norihiro</creator><creator>Hasegawa, Masami</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20060815</creationdate><title>New candidate species most closely related to penguins</title><author>Watanabe, Maiko ; Nikaido, Masato ; Tsuda, Tomi T. ; Kobayashi, Takanori ; Mindell, David ; Cao, Ying ; Okada, Norihiro ; Hasegawa, Masami</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c429t-2aad60a8a4634bff9540a0773687ce87238f02f892d9fcd294376a97b3f3ae633</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Animals</topic><topic>Base Sequence</topic><topic>Birds - classification</topic><topic>Birds - genetics</topic><topic>Codon, Initiator</topic><topic>Codon, Terminator</topic><topic>Complete sequences of mitochondria</topic><topic>DNA, Mitochondrial - genetics</topic><topic>Falconiformes - classification</topic><topic>Falconiformes - genetics</topic><topic>Genes, Mitochondrial</topic><topic>Genome</topic><topic>Mitochondrial Proteins - genetics</topic><topic>Phylogeny</topic><topic>Species Specificity</topic><topic>Spenisciformes</topic><topic>Spheniscidae - classification</topic><topic>Spheniscidae - genetics</topic><topic>Storks</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Watanabe, Maiko</creatorcontrib><creatorcontrib>Nikaido, Masato</creatorcontrib><creatorcontrib>Tsuda, Tomi T.</creatorcontrib><creatorcontrib>Kobayashi, Takanori</creatorcontrib><creatorcontrib>Mindell, David</creatorcontrib><creatorcontrib>Cao, Ying</creatorcontrib><creatorcontrib>Okada, Norihiro</creatorcontrib><creatorcontrib>Hasegawa, Masami</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Gene</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Watanabe, Maiko</au><au>Nikaido, Masato</au><au>Tsuda, Tomi T.</au><au>Kobayashi, Takanori</au><au>Mindell, David</au><au>Cao, Ying</au><au>Okada, Norihiro</au><au>Hasegawa, Masami</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>New candidate species most closely related to penguins</atitle><jtitle>Gene</jtitle><addtitle>Gene</addtitle><date>2006-08-15</date><risdate>2006</risdate><volume>378</volume><spage>65</spage><epage>73</epage><pages>65-73</pages><issn>0378-1119</issn><eissn>1879-0038</eissn><abstract>The phylogenetic position of the order Spenisciformes in Aves remains unclear despite several independent analyses based on morphological and molecular data. To address this issue, we determined the complete mtDNA sequence of rockhopper penguins. The mitochondrial genome, excluding the region from the D-loop to 12SrRNA, was also sequenced for petrel, albatross, frigatebird, loon and grebe, which previous studies suggest are related to penguins. A maximum likelihood analysis of the phylogenetic placement of penguins with 23 birds, including 17 species whose mtDNA sequences were previously reported, suggested that storks are the closest extant relatives of penguins, with 78% and 56% bootstrap supports, depending on the choice of outgroup species. Thus, ciconiiform birds constitute new candidates as the closest extant relatives of penguins (previously proposed candidates were either gaviiform, podicipediform, or procellariiform birds). In addition to this new evidence, our analysis gave evidence to some of ambiguous relationships in the avian tree: our analysis supported a basal split between passerines and other neoavians within Neoaves, and rejected the monophyly of Falconiformes as well as that of loons and grebes.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>16806742</pmid><doi>10.1016/j.gene.2006.05.003</doi><tpages>9</tpages></addata></record> |
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subjects | Animals Base Sequence Birds - classification Birds - genetics Codon, Initiator Codon, Terminator Complete sequences of mitochondria DNA, Mitochondrial - genetics Falconiformes - classification Falconiformes - genetics Genes, Mitochondrial Genome Mitochondrial Proteins - genetics Phylogeny Species Specificity Spenisciformes Spheniscidae - classification Spheniscidae - genetics Storks |
title | New candidate species most closely related to penguins |
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