Sequence analysis of the non-structural 3A and 3C protein-coding regions of foot-and-mouth disease virus serotype Asia1 field isolates from an endemic country
A total of 18 foot-and-mouth disease virus (FMDV) serotype Asia1 field isolates belonging to two different lineages (including the divergent group) as delineated earlier in VP1-based phylogeny were sequenced in the non-structural 3A and 3C protein-coding regions. The phylogenetic trees representing...
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| Veröffentlicht in: | Veterinary microbiology 2006-08, Vol.116 (1), p.187-193 |
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| creator | Biswas, S. Sanyal, A. Hemadri, D. Tosh, C. Mohapatra, J.K. Manoj Kumar, R. Bandyopadhyay, S.K. |
| description | A total of 18 foot-and-mouth disease virus (FMDV) serotype Asia1 field isolates belonging to two different lineages (including the divergent group) as delineated earlier in VP1-based phylogeny were sequenced in the non-structural 3A and 3C protein-coding regions. The phylogenetic trees representing the regions coding for the non-structural proteins were very similar to that of the structural VP1 protein-coding region. Phylogenetic comparison at 3C region revealed clustering of Asia1 viruses with the isolates of serotypes O, A and C in the previously identified clade. Comparison of amino acid sequences identified lineage-specific signature residues in both the non-structural proteins. Overall analysis of the amino acid substitutions revealed that the 3A coding region was more prone to amino acid alterations than 3C region. |
| doi_str_mv | 10.1016/j.vetmic.2006.03.001 |
| format | Article |
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The phylogenetic trees representing the regions coding for the non-structural proteins were very similar to that of the structural VP1 protein-coding region. Phylogenetic comparison at 3C region revealed clustering of Asia1 viruses with the isolates of serotypes O, A and C in the previously identified clade. Comparison of amino acid sequences identified lineage-specific signature residues in both the non-structural proteins. 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Psychology ; India ; microbial genetics ; Microbiology ; Miscellaneous ; molecular sequence data ; non-structural proteins ; nucleotide sequences ; Phylogeny ; Sequence analysis ; Serotype Asia1 ; serotypes ; Viral Nonstructural Proteins - genetics ; viral proteins ; Virology</subject><ispartof>Veterinary microbiology, 2006-08, Vol.116 (1), p.187-193</ispartof><rights>2006 Elsevier B.V.</rights><rights>2006 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c445t-c7651578a1df189138312acc7856aec08ef797d4cc99b3ccda5c7caba106f8fe3</citedby><cites>FETCH-LOGICAL-c445t-c7651578a1df189138312acc7856aec08ef797d4cc99b3ccda5c7caba106f8fe3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.vetmic.2006.03.001$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3536,27903,27904,45974</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18021667$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16621341$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Biswas, S.</creatorcontrib><creatorcontrib>Sanyal, A.</creatorcontrib><creatorcontrib>Hemadri, D.</creatorcontrib><creatorcontrib>Tosh, C.</creatorcontrib><creatorcontrib>Mohapatra, J.K.</creatorcontrib><creatorcontrib>Manoj Kumar, R.</creatorcontrib><creatorcontrib>Bandyopadhyay, S.K.</creatorcontrib><title>Sequence analysis of the non-structural 3A and 3C protein-coding regions of foot-and-mouth disease virus serotype Asia1 field isolates from an endemic country</title><title>Veterinary microbiology</title><addtitle>Vet Microbiol</addtitle><description>A total of 18 foot-and-mouth disease virus (FMDV) serotype Asia1 field isolates belonging to two different lineages (including the divergent group) as delineated earlier in VP1-based phylogeny were sequenced in the non-structural 3A and 3C protein-coding regions. The phylogenetic trees representing the regions coding for the non-structural proteins were very similar to that of the structural VP1 protein-coding region. Phylogenetic comparison at 3C region revealed clustering of Asia1 viruses with the isolates of serotypes O, A and C in the previously identified clade. Comparison of amino acid sequences identified lineage-specific signature residues in both the non-structural proteins. Overall analysis of the amino acid substitutions revealed that the 3A coding region was more prone to amino acid alterations than 3C region.</description><subject>3A and 3C</subject><subject>amino acid sequences</subject><subject>amino acid substitution</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Cell Line</subject><subject>Cricetinae</subject><subject>FMDV</subject><subject>Foot-and-mouth disease virus</subject><subject>Foot-and-Mouth Disease Virus - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>India</subject><subject>microbial genetics</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>molecular sequence data</subject><subject>non-structural proteins</subject><subject>nucleotide sequences</subject><subject>Phylogeny</subject><subject>Sequence analysis</subject><subject>Serotype Asia1</subject><subject>serotypes</subject><subject>Viral Nonstructural Proteins - genetics</subject><subject>viral proteins</subject><subject>Virology</subject><issn>0378-1135</issn><issn>1873-2542</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFksFuEzEQhlcIRNPCGyDwBW4b7PXu2ntBiiIoSJU4lJ4tZzxOHe3awfZGysv0WXFIpN7gNJfvn_ln_qmqd4wuGWX9593ygHlysGwo7ZeULyllL6oFk4LXTdc2L6sF5ULWjPHuqrpOaUcpbYeevq6uWN83jLdsUT3d4-8ZPSDRXo_H5BIJluRHJD74OuU4Q56jHglfFcIQvib7GDI6X0Mwzm9JxK0L_q_MhpDrQtVTmPMjMS6hTkgOLs6JJCy64x7JKjnNiHU4GuJSGHXGRGwMUxlA0BssSxEIs8_x-KZ6ZfWY8O2l3lQP377-Wn-v737e_liv7mpo2y7XIPqOdUJqZiyTA-OSs0YDCNn1GoFKtGIQpgUYhg0HMLoDAXqjGe2ttMhvqk_nvmW5co-U1eQS4Dhqj2FOqpf9wFoh_gsy0XSyaWkB2zMIMaQU0ap9dJOOR8WoOgWoduocoDoFqChXJcAie3_pP28mNM-iS2IF-HgBdAI92qg9uPTMSdoU9mT0w5mzOii9jYV5uG_KBEpFsceaQnw5E1gOe3AYVQJ3egXjIkJWJrh_e_0D1TrHHQ</recordid><startdate>20060825</startdate><enddate>20060825</enddate><creator>Biswas, S.</creator><creator>Sanyal, A.</creator><creator>Hemadri, D.</creator><creator>Tosh, C.</creator><creator>Mohapatra, J.K.</creator><creator>Manoj Kumar, R.</creator><creator>Bandyopadhyay, S.K.</creator><general>Elsevier B.V</general><general>Elsevier Science</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7U9</scope><scope>H94</scope><scope>7X8</scope></search><sort><creationdate>20060825</creationdate><title>Sequence analysis of the non-structural 3A and 3C protein-coding regions of foot-and-mouth disease virus serotype Asia1 field isolates from an endemic country</title><author>Biswas, S. ; Sanyal, A. ; Hemadri, D. ; Tosh, C. ; Mohapatra, J.K. ; Manoj Kumar, R. ; Bandyopadhyay, S.K.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c445t-c7651578a1df189138312acc7856aec08ef797d4cc99b3ccda5c7caba106f8fe3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>3A and 3C</topic><topic>amino acid sequences</topic><topic>amino acid substitution</topic><topic>Animals</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Cell Line</topic><topic>Cricetinae</topic><topic>FMDV</topic><topic>Foot-and-mouth disease virus</topic><topic>Foot-and-Mouth Disease Virus - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>India</topic><topic>microbial genetics</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>molecular sequence data</topic><topic>non-structural proteins</topic><topic>nucleotide sequences</topic><topic>Phylogeny</topic><topic>Sequence analysis</topic><topic>Serotype Asia1</topic><topic>serotypes</topic><topic>Viral Nonstructural Proteins - genetics</topic><topic>viral proteins</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Biswas, S.</creatorcontrib><creatorcontrib>Sanyal, A.</creatorcontrib><creatorcontrib>Hemadri, D.</creatorcontrib><creatorcontrib>Tosh, C.</creatorcontrib><creatorcontrib>Mohapatra, J.K.</creatorcontrib><creatorcontrib>Manoj Kumar, R.</creatorcontrib><creatorcontrib>Bandyopadhyay, S.K.</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Virology and AIDS Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Veterinary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Biswas, S.</au><au>Sanyal, A.</au><au>Hemadri, D.</au><au>Tosh, C.</au><au>Mohapatra, J.K.</au><au>Manoj Kumar, R.</au><au>Bandyopadhyay, S.K.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Sequence analysis of the non-structural 3A and 3C protein-coding regions of foot-and-mouth disease virus serotype Asia1 field isolates from an endemic country</atitle><jtitle>Veterinary microbiology</jtitle><addtitle>Vet Microbiol</addtitle><date>2006-08-25</date><risdate>2006</risdate><volume>116</volume><issue>1</issue><spage>187</spage><epage>193</epage><pages>187-193</pages><issn>0378-1135</issn><eissn>1873-2542</eissn><coden>VMICDQ</coden><abstract>A total of 18 foot-and-mouth disease virus (FMDV) serotype Asia1 field isolates belonging to two different lineages (including the divergent group) as delineated earlier in VP1-based phylogeny were sequenced in the non-structural 3A and 3C protein-coding regions. The phylogenetic trees representing the regions coding for the non-structural proteins were very similar to that of the structural VP1 protein-coding region. Phylogenetic comparison at 3C region revealed clustering of Asia1 viruses with the isolates of serotypes O, A and C in the previously identified clade. Comparison of amino acid sequences identified lineage-specific signature residues in both the non-structural proteins. Overall analysis of the amino acid substitutions revealed that the 3A coding region was more prone to amino acid alterations than 3C region.</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><pmid>16621341</pmid><doi>10.1016/j.vetmic.2006.03.001</doi><tpages>7</tpages></addata></record> |
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| subjects | 3A and 3C amino acid sequences amino acid substitution Animals Base Sequence Biological and medical sciences Cell Line Cricetinae FMDV Foot-and-mouth disease virus Foot-and-Mouth Disease Virus - genetics Fundamental and applied biological sciences. Psychology India microbial genetics Microbiology Miscellaneous molecular sequence data non-structural proteins nucleotide sequences Phylogeny Sequence analysis Serotype Asia1 serotypes Viral Nonstructural Proteins - genetics viral proteins Virology |
| title | Sequence analysis of the non-structural 3A and 3C protein-coding regions of foot-and-mouth disease virus serotype Asia1 field isolates from an endemic country |
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