Density functional theory study of self-association of N -methylformamide and its effect on intramolecular and intermolecular geometrical parameters and the cis / trans population
The single-point total energy ( E ) of several acyclic and cyclic oligomers of N -methylformamide (NMF) was computed by the first time without any geometrical restriction, using the B 3 LYP ∕ 6 - 31 G * method of the density functional theory in order to determine the effect of self-association on i...
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creator | García Martínez, A. Teso Vilar, E. García Fraile, A. Martínez-Ruiz, P. |
description | The single-point total energy
(
E
)
of several acyclic and cyclic oligomers of
N
-methylformamide (NMF) was computed by the first time without any geometrical restriction, using the
B
3
LYP
∕
6
-
31
G
*
method of the density functional theory in order to determine the effect of self-association on intramolecular geometrical parameters of
cis
- and
trans
-NMF, the intermolecular distances of the hydrogen-bonding chains formed by NMF as well as intermolecular association energies including couterpoise corrections. It is concluded that liquid NMF exists mainly as polymers formed by self-association of
trans
-NMF units, whereas the
cis
-NMF isomer occurs as isolated units inserted along the chains. These computational results are in accordance with the experimentally determined predominance (ca. 90%) of
trans
-NMF population by means of
H
1
- NMR and other spectroscopic techniques, but in severe contradiction with a recent interpretation of x-ray diffraction data on liquid NMF, postulating a cyclic trimer of
cis
-NMF
(
c
-
C
3
)
as the predominating species. The counterpoise-corrected values of the association energy,
Δ
E
(
CP
)
, calculated for cyclic oligomers, increase with the polymerization degree
(
n
)
revealing a high grade of cooperative effect for amidic hydrogen-bonded chains. Noteworthy, the difference between the
Δ
E
(
CP
)
values of the cyclic
cis
- and
trans
-homooligomers of NMF is positive for
n
=
2
and 3 but negative for
n
⩾
4
. |
doi_str_mv | 10.1063/1.2204910 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_68612326</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>68612326</sourcerecordid><originalsourceid>FETCH-LOGICAL-c338t-ff9a1cfb71ea3a98f1cf78e8d1dbab4918637bc2545729511e1f7113c2c6b4673</originalsourceid><addsrcrecordid>eNp1kcFu1DAQhi0EokvhwAsgn5A4pPXYu05yQUItFKQKLnC2HGdMjZI4eJxDnosXxNuNtKeeLI8__zP2x9hbEFcgtLqGKynFvgXxjO1ANG1V61Y8ZzshJFStFvqCvSL6I4SAWu5fsgvQjYQW9I79u8WJQl65XyaXQ5zswPMDxrRyyku_8ug54eArSxRdsEfkWPvOqxHzwzr4mEY7hh65nXoeMnH0Hl3mhQtTTnaMA7plsOkETBnTufQbY4lJwZW2sy0wlmN6JMsU3AXi17yETMTnOJcrx_6v2QtvB8I323rJfn35_PPma3X_4-7bzaf7yinV5Mr71oLzXQ1olW0bXzZ1g00PfWe78l2NVnXn5GF_qGV7AEDwNYBy0ulur2t1yd6fcucU_y5I2YyBHA6DnTAuZHSjQSqpC_jhBLoUiRJ6M6cw2rQaEOZoyIDZDBX23Ra6dCP2Z3JTUoCPJ4BcyI_vfTptk2fO8kxW_wGE3KWS</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>68612326</pqid></control><display><type>article</type><title>Density functional theory study of self-association of N -methylformamide and its effect on intramolecular and intermolecular geometrical parameters and the cis / trans population</title><source>AIP Journals Complete</source><source>AIP Digital Archive</source><creator>García Martínez, A. ; Teso Vilar, E. ; García Fraile, A. ; Martínez-Ruiz, P.</creator><creatorcontrib>García Martínez, A. ; Teso Vilar, E. ; García Fraile, A. ; Martínez-Ruiz, P.</creatorcontrib><description>The single-point total energy
(
E
)
of several acyclic and cyclic oligomers of
N
-methylformamide (NMF) was computed by the first time without any geometrical restriction, using the
B
3
LYP
∕
6
-
31
G
*
method of the density functional theory in order to determine the effect of self-association on intramolecular geometrical parameters of
cis
- and
trans
-NMF, the intermolecular distances of the hydrogen-bonding chains formed by NMF as well as intermolecular association energies including couterpoise corrections. It is concluded that liquid NMF exists mainly as polymers formed by self-association of
trans
-NMF units, whereas the
cis
-NMF isomer occurs as isolated units inserted along the chains. These computational results are in accordance with the experimentally determined predominance (ca. 90%) of
trans
-NMF population by means of
H
1
- NMR and other spectroscopic techniques, but in severe contradiction with a recent interpretation of x-ray diffraction data on liquid NMF, postulating a cyclic trimer of
cis
-NMF
(
c
-
C
3
)
as the predominating species. The counterpoise-corrected values of the association energy,
Δ
E
(
CP
)
, calculated for cyclic oligomers, increase with the polymerization degree
(
n
)
revealing a high grade of cooperative effect for amidic hydrogen-bonded chains. Noteworthy, the difference between the
Δ
E
(
CP
)
values of the cyclic
cis
- and
trans
-homooligomers of NMF is positive for
n
=
2
and 3 but negative for
n
⩾
4
.</description><identifier>ISSN: 0021-9606</identifier><identifier>EISSN: 1089-7690</identifier><identifier>DOI: 10.1063/1.2204910</identifier><identifier>PMID: 16821916</identifier><identifier>CODEN: JCPSA6</identifier><language>eng</language><publisher>United States: American Institute of Physics</publisher><ispartof>The Journal of chemical physics, 2006-06, Vol.124 (23), p.234305-234305-6</ispartof><rights>2006 American Institute of Physics</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c338t-ff9a1cfb71ea3a98f1cf78e8d1dbab4918637bc2545729511e1f7113c2c6b4673</citedby><cites>FETCH-LOGICAL-c338t-ff9a1cfb71ea3a98f1cf78e8d1dbab4918637bc2545729511e1f7113c2c6b4673</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,790,1553,4497,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16821916$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>García Martínez, A.</creatorcontrib><creatorcontrib>Teso Vilar, E.</creatorcontrib><creatorcontrib>García Fraile, A.</creatorcontrib><creatorcontrib>Martínez-Ruiz, P.</creatorcontrib><title>Density functional theory study of self-association of N -methylformamide and its effect on intramolecular and intermolecular geometrical parameters and the cis / trans population</title><title>The Journal of chemical physics</title><addtitle>J Chem Phys</addtitle><description>The single-point total energy
(
E
)
of several acyclic and cyclic oligomers of
N
-methylformamide (NMF) was computed by the first time without any geometrical restriction, using the
B
3
LYP
∕
6
-
31
G
*
method of the density functional theory in order to determine the effect of self-association on intramolecular geometrical parameters of
cis
- and
trans
-NMF, the intermolecular distances of the hydrogen-bonding chains formed by NMF as well as intermolecular association energies including couterpoise corrections. It is concluded that liquid NMF exists mainly as polymers formed by self-association of
trans
-NMF units, whereas the
cis
-NMF isomer occurs as isolated units inserted along the chains. These computational results are in accordance with the experimentally determined predominance (ca. 90%) of
trans
-NMF population by means of
H
1
- NMR and other spectroscopic techniques, but in severe contradiction with a recent interpretation of x-ray diffraction data on liquid NMF, postulating a cyclic trimer of
cis
-NMF
(
c
-
C
3
)
as the predominating species. The counterpoise-corrected values of the association energy,
Δ
E
(
CP
)
, calculated for cyclic oligomers, increase with the polymerization degree
(
n
)
revealing a high grade of cooperative effect for amidic hydrogen-bonded chains. Noteworthy, the difference between the
Δ
E
(
CP
)
values of the cyclic
cis
- and
trans
-homooligomers of NMF is positive for
n
=
2
and 3 but negative for
n
⩾
4
.</description><issn>0021-9606</issn><issn>1089-7690</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><recordid>eNp1kcFu1DAQhi0EokvhwAsgn5A4pPXYu05yQUItFKQKLnC2HGdMjZI4eJxDnosXxNuNtKeeLI8__zP2x9hbEFcgtLqGKynFvgXxjO1ANG1V61Y8ZzshJFStFvqCvSL6I4SAWu5fsgvQjYQW9I79u8WJQl65XyaXQ5zswPMDxrRyyku_8ug54eArSxRdsEfkWPvOqxHzwzr4mEY7hh65nXoeMnH0Hl3mhQtTTnaMA7plsOkETBnTufQbY4lJwZW2sy0wlmN6JMsU3AXi17yETMTnOJcrx_6v2QtvB8I323rJfn35_PPma3X_4-7bzaf7yinV5Mr71oLzXQ1olW0bXzZ1g00PfWe78l2NVnXn5GF_qGV7AEDwNYBy0ulur2t1yd6fcucU_y5I2YyBHA6DnTAuZHSjQSqpC_jhBLoUiRJ6M6cw2rQaEOZoyIDZDBX23Ra6dCP2Z3JTUoCPJ4BcyI_vfTptk2fO8kxW_wGE3KWS</recordid><startdate>20060621</startdate><enddate>20060621</enddate><creator>García Martínez, A.</creator><creator>Teso Vilar, E.</creator><creator>García Fraile, A.</creator><creator>Martínez-Ruiz, P.</creator><general>American Institute of Physics</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20060621</creationdate><title>Density functional theory study of self-association of N -methylformamide and its effect on intramolecular and intermolecular geometrical parameters and the cis / trans population</title><author>García Martínez, A. ; Teso Vilar, E. ; García Fraile, A. ; Martínez-Ruiz, P.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c338t-ff9a1cfb71ea3a98f1cf78e8d1dbab4918637bc2545729511e1f7113c2c6b4673</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>García Martínez, A.</creatorcontrib><creatorcontrib>Teso Vilar, E.</creatorcontrib><creatorcontrib>García Fraile, A.</creatorcontrib><creatorcontrib>Martínez-Ruiz, P.</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>The Journal of chemical physics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>García Martínez, A.</au><au>Teso Vilar, E.</au><au>García Fraile, A.</au><au>Martínez-Ruiz, P.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Density functional theory study of self-association of N -methylformamide and its effect on intramolecular and intermolecular geometrical parameters and the cis / trans population</atitle><jtitle>The Journal of chemical physics</jtitle><addtitle>J Chem Phys</addtitle><date>2006-06-21</date><risdate>2006</risdate><volume>124</volume><issue>23</issue><spage>234305</spage><epage>234305-6</epage><pages>234305-234305-6</pages><issn>0021-9606</issn><eissn>1089-7690</eissn><coden>JCPSA6</coden><abstract>The single-point total energy
(
E
)
of several acyclic and cyclic oligomers of
N
-methylformamide (NMF) was computed by the first time without any geometrical restriction, using the
B
3
LYP
∕
6
-
31
G
*
method of the density functional theory in order to determine the effect of self-association on intramolecular geometrical parameters of
cis
- and
trans
-NMF, the intermolecular distances of the hydrogen-bonding chains formed by NMF as well as intermolecular association energies including couterpoise corrections. It is concluded that liquid NMF exists mainly as polymers formed by self-association of
trans
-NMF units, whereas the
cis
-NMF isomer occurs as isolated units inserted along the chains. These computational results are in accordance with the experimentally determined predominance (ca. 90%) of
trans
-NMF population by means of
H
1
- NMR and other spectroscopic techniques, but in severe contradiction with a recent interpretation of x-ray diffraction data on liquid NMF, postulating a cyclic trimer of
cis
-NMF
(
c
-
C
3
)
as the predominating species. The counterpoise-corrected values of the association energy,
Δ
E
(
CP
)
, calculated for cyclic oligomers, increase with the polymerization degree
(
n
)
revealing a high grade of cooperative effect for amidic hydrogen-bonded chains. Noteworthy, the difference between the
Δ
E
(
CP
)
values of the cyclic
cis
- and
trans
-homooligomers of NMF is positive for
n
=
2
and 3 but negative for
n
⩾
4
.</abstract><cop>United States</cop><pub>American Institute of Physics</pub><pmid>16821916</pmid><doi>10.1063/1.2204910</doi><tpages>1</tpages></addata></record> |
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source | AIP Journals Complete; AIP Digital Archive |
title | Density functional theory study of self-association of N -methylformamide and its effect on intramolecular and intermolecular geometrical parameters and the cis / trans population |
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