Calculation of rotational partition functions by an efficient Monte Carlo importance sampling technique
The evaluation of the classical rotational partition function represented by a configuration integral over all external and internal rotational degrees of freedom of nonrigid chain polyatomic molecules is described. The method of Pitzer and Gwinn is used to correct the classical partition function f...
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Veröffentlicht in: | Journal of computational chemistry 2005-11, Vol.26 (15), p.1579-1591 |
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description | The evaluation of the classical rotational partition function represented by a configuration integral over all external and internal rotational degrees of freedom of nonrigid chain polyatomic molecules is described. The method of Pitzer and Gwinn is used to correct the classical partition function for quantum mechanical effects at low temperatures. The internal rotor hindrance and all coupling arising from the external and internal rotational degrees of freedom are explicitly taken into account. Importance sampling Monte Carlo based on the adaptive VEGAS algorithm to perform multidimensional integration is implemented within the TINKER program package. A multidimensional potential energy hypersurface is calculated with the MM3(2000) molecular mechanics force field. Numerical tests are performed on a number of small n‐alkanes (from ethane to octane), for which the absolute entropies calculated at three different temperatures are compared both with the experimental values and with the previous theoretical results. The application of a more efficient importance sampling technique developed here results in a substantial reduction of statistical errors in the evaluation of the configuration integral for a given number of Monte Carlo steps. Error estimates for the calculated entropies are given, and possible sources of systematic errors, and their importance for a reliable prediction of the absolute entropy, are discussed. © 2005 Wiley Periodicals, Inc. J Comput Chem 26: 1579–1591, 2005 |
doi_str_mv | 10.1002/jcc.20298 |
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The method of Pitzer and Gwinn is used to correct the classical partition function for quantum mechanical effects at low temperatures. The internal rotor hindrance and all coupling arising from the external and internal rotational degrees of freedom are explicitly taken into account. Importance sampling Monte Carlo based on the adaptive VEGAS algorithm to perform multidimensional integration is implemented within the TINKER program package. A multidimensional potential energy hypersurface is calculated with the MM3(2000) molecular mechanics force field. Numerical tests are performed on a number of small n‐alkanes (from ethane to octane), for which the absolute entropies calculated at three different temperatures are compared both with the experimental values and with the previous theoretical results. The application of a more efficient importance sampling technique developed here results in a substantial reduction of statistical errors in the evaluation of the configuration integral for a given number of Monte Carlo steps. Error estimates for the calculated entropies are given, and possible sources of systematic errors, and their importance for a reliable prediction of the absolute entropy, are discussed. © 2005 Wiley Periodicals, Inc. J Comput Chem 26: 1579–1591, 2005</description><identifier>ISSN: 0192-8651</identifier><identifier>EISSN: 1096-987X</identifier><identifier>DOI: 10.1002/jcc.20298</identifier><identifier>PMID: 16145654</identifier><identifier>CODEN: JCCHDD</identifier><language>eng</language><publisher>Hoboken: Wiley Subscription Services, Inc., A Wiley Company</publisher><subject>Algorithms ; alkanes ; Alkanes - chemistry ; entropy ; generalized inertial tensor ; hindered rotor ; importance sampling ; Models, Chemical ; molecular mechanics ; Molecules ; Monte Carlo Method ; Monte Carlo simulation ; Monte Carlo simulations ; partition function ; Quantum Theory ; Sampling techniques ; Temperature</subject><ispartof>Journal of computational chemistry, 2005-11, Vol.26 (15), p.1579-1591</ispartof><rights>Copyright © 2005 Wiley Periodicals, Inc.</rights><rights>Copyright 2005 Wiley Periodicals, Inc.</rights><rights>Copyright John Wiley and Sons, Limited Nov 30, 2005</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3888-d96a9d513f1e56b87e36bf5de51fd2e46355993c0542bc3a6189e0d6f7faafeb3</citedby><cites>FETCH-LOGICAL-c3888-d96a9d513f1e56b87e36bf5de51fd2e46355993c0542bc3a6189e0d6f7faafeb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fjcc.20298$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fjcc.20298$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,778,782,1414,27907,27908,45557,45558</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16145654$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tafipolsky, M.</creatorcontrib><creatorcontrib>Schmid, R.</creatorcontrib><title>Calculation of rotational partition functions by an efficient Monte Carlo importance sampling technique</title><title>Journal of computational chemistry</title><addtitle>J. Comput. Chem</addtitle><description>The evaluation of the classical rotational partition function represented by a configuration integral over all external and internal rotational degrees of freedom of nonrigid chain polyatomic molecules is described. The method of Pitzer and Gwinn is used to correct the classical partition function for quantum mechanical effects at low temperatures. The internal rotor hindrance and all coupling arising from the external and internal rotational degrees of freedom are explicitly taken into account. Importance sampling Monte Carlo based on the adaptive VEGAS algorithm to perform multidimensional integration is implemented within the TINKER program package. A multidimensional potential energy hypersurface is calculated with the MM3(2000) molecular mechanics force field. Numerical tests are performed on a number of small n‐alkanes (from ethane to octane), for which the absolute entropies calculated at three different temperatures are compared both with the experimental values and with the previous theoretical results. The application of a more efficient importance sampling technique developed here results in a substantial reduction of statistical errors in the evaluation of the configuration integral for a given number of Monte Carlo steps. Error estimates for the calculated entropies are given, and possible sources of systematic errors, and their importance for a reliable prediction of the absolute entropy, are discussed. © 2005 Wiley Periodicals, Inc. J Comput Chem 26: 1579–1591, 2005</description><subject>Algorithms</subject><subject>alkanes</subject><subject>Alkanes - chemistry</subject><subject>entropy</subject><subject>generalized inertial tensor</subject><subject>hindered rotor</subject><subject>importance sampling</subject><subject>Models, Chemical</subject><subject>molecular mechanics</subject><subject>Molecules</subject><subject>Monte Carlo Method</subject><subject>Monte Carlo simulation</subject><subject>Monte Carlo simulations</subject><subject>partition function</subject><subject>Quantum Theory</subject><subject>Sampling techniques</subject><subject>Temperature</subject><issn>0192-8651</issn><issn>1096-987X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kE1v1DAQhi0EotuFA38AWRyQOKS149ixjyiCAipfEqgVF8txxsVLYqd2orL_nuwHICExlxmNnnln5kXoCSVnlJDyfGPtWUlKJe-hFSVKFErW1_fRilBVFlJweoJOc94QQhgX1UN0QgWtuODVCt00prdzbyYfA44Opzjta9Pj0aTJ7_tuDnZXZNxusQkYnPPWQ5jw-xgmwI1JfcR-GGOaTLCAsxnG3ocbPIH9HvztDI_QA2f6DI-PeY2-vn71pXlTXH68eNu8vCwsk1IWnRJGdZwyR4GLVtbAROt4B5y6roRKMM6VYpbwqmwtM4JKBaQTrnbGOGjZGj0_6I4pLmvzpAefLfS9CRDnrIUUlHAlFvDZP-Amzmn5O-tyF0wuV6zRiwNkU8w5gdNj8oNJW02J3lmvF-v13vqFfXoUnNsBur_k0esFOD8Ad76H7f-V9Lum-S1ZHCZ8nuDnnwmTfmhRs5rrqw8X-ppeVZ-_fVK6Yr8A64qeHg</recordid><startdate>20051130</startdate><enddate>20051130</enddate><creator>Tafipolsky, M.</creator><creator>Schmid, R.</creator><general>Wiley Subscription Services, Inc., A Wiley Company</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>JQ2</scope><scope>7X8</scope></search><sort><creationdate>20051130</creationdate><title>Calculation of rotational partition functions by an efficient Monte Carlo importance sampling technique</title><author>Tafipolsky, M. ; Schmid, R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3888-d96a9d513f1e56b87e36bf5de51fd2e46355993c0542bc3a6189e0d6f7faafeb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Algorithms</topic><topic>alkanes</topic><topic>Alkanes - chemistry</topic><topic>entropy</topic><topic>generalized inertial tensor</topic><topic>hindered rotor</topic><topic>importance sampling</topic><topic>Models, Chemical</topic><topic>molecular mechanics</topic><topic>Molecules</topic><topic>Monte Carlo Method</topic><topic>Monte Carlo simulation</topic><topic>Monte Carlo simulations</topic><topic>partition function</topic><topic>Quantum Theory</topic><topic>Sampling techniques</topic><topic>Temperature</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tafipolsky, M.</creatorcontrib><creatorcontrib>Schmid, R.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Computer Science Collection</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of computational chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tafipolsky, M.</au><au>Schmid, R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Calculation of rotational partition functions by an efficient Monte Carlo importance sampling technique</atitle><jtitle>Journal of computational chemistry</jtitle><addtitle>J. Comput. Chem</addtitle><date>2005-11-30</date><risdate>2005</risdate><volume>26</volume><issue>15</issue><spage>1579</spage><epage>1591</epage><pages>1579-1591</pages><issn>0192-8651</issn><eissn>1096-987X</eissn><coden>JCCHDD</coden><abstract>The evaluation of the classical rotational partition function represented by a configuration integral over all external and internal rotational degrees of freedom of nonrigid chain polyatomic molecules is described. The method of Pitzer and Gwinn is used to correct the classical partition function for quantum mechanical effects at low temperatures. The internal rotor hindrance and all coupling arising from the external and internal rotational degrees of freedom are explicitly taken into account. Importance sampling Monte Carlo based on the adaptive VEGAS algorithm to perform multidimensional integration is implemented within the TINKER program package. A multidimensional potential energy hypersurface is calculated with the MM3(2000) molecular mechanics force field. Numerical tests are performed on a number of small n‐alkanes (from ethane to octane), for which the absolute entropies calculated at three different temperatures are compared both with the experimental values and with the previous theoretical results. The application of a more efficient importance sampling technique developed here results in a substantial reduction of statistical errors in the evaluation of the configuration integral for a given number of Monte Carlo steps. Error estimates for the calculated entropies are given, and possible sources of systematic errors, and their importance for a reliable prediction of the absolute entropy, are discussed. © 2005 Wiley Periodicals, Inc. J Comput Chem 26: 1579–1591, 2005</abstract><cop>Hoboken</cop><pub>Wiley Subscription Services, Inc., A Wiley Company</pub><pmid>16145654</pmid><doi>10.1002/jcc.20298</doi><tpages>13</tpages></addata></record> |
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subjects | Algorithms alkanes Alkanes - chemistry entropy generalized inertial tensor hindered rotor importance sampling Models, Chemical molecular mechanics Molecules Monte Carlo Method Monte Carlo simulation Monte Carlo simulations partition function Quantum Theory Sampling techniques Temperature |
title | Calculation of rotational partition functions by an efficient Monte Carlo importance sampling technique |
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