Norovirus recombination
School of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney 2052, Australia Correspondence Peter A. White p.white{at}unsw.edu.au RNA recombination is a significant driving force in viral evolution. Increased awareness of recombination within the genus...
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| Veröffentlicht in: | Journal of general virology 2007-12, Vol.88 (12), p.3347-3359 |
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| container_title | Journal of general virology |
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| creator | Bull, Rowena A Tanaka, Mark M White, Peter A |
| description | School of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney 2052, Australia
Correspondence Peter A. White p.white{at}unsw.edu.au
RNA recombination is a significant driving force in viral evolution. Increased awareness of recombination within the genus Norovirus of the family Calicivirus has led to a rise in the identification of norovirus (NoV) recombinants and they are now reported at high frequency. Currently, there is no classification system for recombinant NoVs and a widely accepted recombinant genotyping system is still needed. Consequently, there is duplication in reporting of novel recombinants. This has led to difficulties in defining the number and types of recombinants in circulation. In this study, 120 NoV nucleotide sequences were compiled from the current GenBank database and published literature. NoV recombinants and their recombination breakpoints were identified using three methods: phylogenetic analysis, SimPlot analysis and the maximum 2 method. A total of 20 NoV recombinant types were identified in circulation worldwide. The recombination point is the ORF1/2 overlap in all isolates except one, which demonstrated a double recombination event within the polymerase region. |
| doi_str_mv | 10.1099/vir.0.83321-0 |
| format | Article |
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Correspondence Peter A. White p.white{at}unsw.edu.au
RNA recombination is a significant driving force in viral evolution. Increased awareness of recombination within the genus Norovirus of the family Calicivirus has led to a rise in the identification of norovirus (NoV) recombinants and they are now reported at high frequency. Currently, there is no classification system for recombinant NoVs and a widely accepted recombinant genotyping system is still needed. Consequently, there is duplication in reporting of novel recombinants. This has led to difficulties in defining the number and types of recombinants in circulation. In this study, 120 NoV nucleotide sequences were compiled from the current GenBank database and published literature. NoV recombinants and their recombination breakpoints were identified using three methods: phylogenetic analysis, SimPlot analysis and the maximum 2 method. A total of 20 NoV recombinant types were identified in circulation worldwide. The recombination point is the ORF1/2 overlap in all isolates except one, which demonstrated a double recombination event within the polymerase region.</description><identifier>ISSN: 0022-1317</identifier><identifier>EISSN: 1465-2099</identifier><identifier>DOI: 10.1099/vir.0.83321-0</identifier><identifier>PMID: 18024905</identifier><identifier>CODEN: JGVIAY</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Biological and medical sciences ; Caliciviridae Infections - virology ; DNA-Directed RNA Polymerases - genetics ; Fundamental and applied biological sciences. Psychology ; Global Health ; Humans ; Microbiology ; Miscellaneous ; Norovirus - genetics ; Phylogeny ; Recombination, Genetic ; Sequence Alignment ; Viral Proteins - genetics ; Virology</subject><ispartof>Journal of general virology, 2007-12, Vol.88 (12), p.3347-3359</ispartof><rights>2008 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c460t-e4808ffd9044d611752db8f8e0170a95fee003ff3095029756f2e32b2b62025a3</citedby><cites>FETCH-LOGICAL-c460t-e4808ffd9044d611752db8f8e0170a95fee003ff3095029756f2e32b2b62025a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,781,785,3747,3748,27929,27930</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=19862865$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18024905$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bull, Rowena A</creatorcontrib><creatorcontrib>Tanaka, Mark M</creatorcontrib><creatorcontrib>White, Peter A</creatorcontrib><title>Norovirus recombination</title><title>Journal of general virology</title><addtitle>J Gen Virol</addtitle><description>School of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney 2052, Australia
Correspondence Peter A. White p.white{at}unsw.edu.au
RNA recombination is a significant driving force in viral evolution. Increased awareness of recombination within the genus Norovirus of the family Calicivirus has led to a rise in the identification of norovirus (NoV) recombinants and they are now reported at high frequency. Currently, there is no classification system for recombinant NoVs and a widely accepted recombinant genotyping system is still needed. Consequently, there is duplication in reporting of novel recombinants. This has led to difficulties in defining the number and types of recombinants in circulation. In this study, 120 NoV nucleotide sequences were compiled from the current GenBank database and published literature. NoV recombinants and their recombination breakpoints were identified using three methods: phylogenetic analysis, SimPlot analysis and the maximum 2 method. A total of 20 NoV recombinant types were identified in circulation worldwide. The recombination point is the ORF1/2 overlap in all isolates except one, which demonstrated a double recombination event within the polymerase region.</description><subject>Biological and medical sciences</subject><subject>Caliciviridae Infections - virology</subject><subject>DNA-Directed RNA Polymerases - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Global Health</subject><subject>Humans</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Norovirus - genetics</subject><subject>Phylogeny</subject><subject>Recombination, Genetic</subject><subject>Sequence Alignment</subject><subject>Viral Proteins - genetics</subject><subject>Virology</subject><issn>0022-1317</issn><issn>1465-2099</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpF0DtPwzAQB3ALgWgpjIgNsYDEkHB-xh5RxUuqYIHZchK7NUriYjcgvj0pjdTphvvpfw-EzjHkGJS6-_Yxh1xSSnAGB2iKmeAZGTqHaApASIYpLiboJKVPAMwYL47RBEsgTAGfoovXEMOQ0aeraKvQlr4zGx-6U3TkTJPs2Vhn6OPx4X3-nC3enl7m94usYgI2mWUSpHO1AsZqgXHBSV1KJy3gAozizloA6hwFxYGoggtHLCUlKQUBwg2doZtd7jqGr96mjW59qmzTmM6GPmkhOVFUsQFmO1jFkFK0Tq-jb0381Rj09hN6uEKD_v-EhsFfjsF92dp6r8fTB3A9ApMq07housqnvVNSECm27nbnVn65-vHR6qXtWj-sUfqwHSqlxkRTygr6B09kcpY</recordid><startdate>20071201</startdate><enddate>20071201</enddate><creator>Bull, Rowena A</creator><creator>Tanaka, Mark M</creator><creator>White, Peter A</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20071201</creationdate><title>Norovirus recombination</title><author>Bull, Rowena A ; Tanaka, Mark M ; White, Peter A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c460t-e4808ffd9044d611752db8f8e0170a95fee003ff3095029756f2e32b2b62025a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Biological and medical sciences</topic><topic>Caliciviridae Infections - virology</topic><topic>DNA-Directed RNA Polymerases - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Global Health</topic><topic>Humans</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Norovirus - genetics</topic><topic>Phylogeny</topic><topic>Recombination, Genetic</topic><topic>Sequence Alignment</topic><topic>Viral Proteins - genetics</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bull, Rowena A</creatorcontrib><creatorcontrib>Tanaka, Mark M</creatorcontrib><creatorcontrib>White, Peter A</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of general virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bull, Rowena A</au><au>Tanaka, Mark M</au><au>White, Peter A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Norovirus recombination</atitle><jtitle>Journal of general virology</jtitle><addtitle>J Gen Virol</addtitle><date>2007-12-01</date><risdate>2007</risdate><volume>88</volume><issue>12</issue><spage>3347</spage><epage>3359</epage><pages>3347-3359</pages><issn>0022-1317</issn><eissn>1465-2099</eissn><coden>JGVIAY</coden><abstract>School of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney 2052, Australia
Correspondence Peter A. White p.white{at}unsw.edu.au
RNA recombination is a significant driving force in viral evolution. Increased awareness of recombination within the genus Norovirus of the family Calicivirus has led to a rise in the identification of norovirus (NoV) recombinants and they are now reported at high frequency. Currently, there is no classification system for recombinant NoVs and a widely accepted recombinant genotyping system is still needed. Consequently, there is duplication in reporting of novel recombinants. This has led to difficulties in defining the number and types of recombinants in circulation. In this study, 120 NoV nucleotide sequences were compiled from the current GenBank database and published literature. NoV recombinants and their recombination breakpoints were identified using three methods: phylogenetic analysis, SimPlot analysis and the maximum 2 method. A total of 20 NoV recombinant types were identified in circulation worldwide. The recombination point is the ORF1/2 overlap in all isolates except one, which demonstrated a double recombination event within the polymerase region.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>18024905</pmid><doi>10.1099/vir.0.83321-0</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; Alma/SFX Local Collection; EZB Electronic Journals Library |
| subjects | Biological and medical sciences Caliciviridae Infections - virology DNA-Directed RNA Polymerases - genetics Fundamental and applied biological sciences. Psychology Global Health Humans Microbiology Miscellaneous Norovirus - genetics Phylogeny Recombination, Genetic Sequence Alignment Viral Proteins - genetics Virology |
| title | Norovirus recombination |
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