TASSEL: software for association mapping of complex traits in diverse samples
Association analyses that exploit the natural diversity of a genome to map at very high resolutions are becoming increasingly important. In most studies, however, researchers must contend with the confounding effects of both population and family structure. TASSEL (Trait Analysis by aSSociation, Evo...
Gespeichert in:
| Veröffentlicht in: | Bioinformatics 2007-10, Vol.23 (19), p.2633-2635 |
|---|---|
| Hauptverfasser: | , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext bestellen |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 2635 |
|---|---|
| container_issue | 19 |
| container_start_page | 2633 |
| container_title | Bioinformatics |
| container_volume | 23 |
| creator | Bradbury, Peter J. Zhang, Zhiwu Kroon, Dallas E. Casstevens, Terry M. Ramdoss, Yogesh Buckler, Edward S. |
| description | Association analyses that exploit the natural diversity of a genome to map at very high resolutions are becoming increasingly important. In most studies, however, researchers must contend with the confounding effects of both population and family structure. TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) implements general linear model and mixed linear model approaches for controlling population and family structure. For result interpretation, the program allows for linkage disequilibrium statistics to be calculated and visualized graphically. Database browsing and data importation is facilitated by integrated middleware. Other features include analyzing insertions/deletions, calculating diversity statistics, integration of phenotypic and genotypic data, imputing missing data and calculating principal components. Availability: The TASSEL executable, user manual, example data sets and tutorial document are freely available at http://www.maizegenetics.net/tassel. The source code for TASSEL can be found at http://sourceforge.net/projects/tassel. Contact: pjb39@cornell.edu |
| doi_str_mv | 10.1093/bioinformatics/btm308 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_TOX</sourceid><recordid>TN_cdi_proquest_miscellaneous_68442750</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><oup_id>10.1093/bioinformatics/btm308</oup_id><sourcerecordid>1375820341</sourcerecordid><originalsourceid>FETCH-LOGICAL-c675t-d3095ed2a465260a3ce002d26964fa279b5bd1ffbb3cf1c834873928588bc6213</originalsourceid><addsrcrecordid>eNqNkc1u1TAQhSMEoqXwCCALCXah_o_NrqpKL3ARixZRsbEcx0YuSRw8CZS3x1e5ooJNWc1I850zmjlV9ZTgVwRrdtzGFMeQ8mDn6OC4nQeG1b3qkHCJa4qFvl96JpuaK8wOqkcA1xgLwjl_WB2QRiipqD6sPlyeXFycbV8jSGH-abNHxRNZgORicU4jGuw0xfErSgG5NEy9v0FztnEGFEfUxR8-g0dgdxN4XD0Itgf_ZF-Pqk9vzi5PN_X24_nb05Nt7WQj5rpjWAvfUculoBJb5jzGtKNSSx4sbXQr2o6E0LbMBeIU46phmiqhVOskJeyoern6Tjl9XzzMZojgfN_b0acFjFSc00bgO0HGhKJN-eddIMVcKqF34PN_wOu05LFca4hWUsry2wKJFXI5AWQfzJTjYPMvQ7DZxWf-js-s8RXds7350g6-u1Xt8yrAiz1gwdk-ZDu6CLecVopTzAqHVy4t03_vrldJhNnf_BHZ_M3IhjXCbK6-mPMrvZHv6Tvzmf0GKZ7HpQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>198666175</pqid></control><display><type>article</type><title>TASSEL: software for association mapping of complex traits in diverse samples</title><source>Oxford Journals Open Access Collection</source><creator>Bradbury, Peter J. ; Zhang, Zhiwu ; Kroon, Dallas E. ; Casstevens, Terry M. ; Ramdoss, Yogesh ; Buckler, Edward S.</creator><creatorcontrib>Bradbury, Peter J. ; Zhang, Zhiwu ; Kroon, Dallas E. ; Casstevens, Terry M. ; Ramdoss, Yogesh ; Buckler, Edward S.</creatorcontrib><description>Association analyses that exploit the natural diversity of a genome to map at very high resolutions are becoming increasingly important. In most studies, however, researchers must contend with the confounding effects of both population and family structure. TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) implements general linear model and mixed linear model approaches for controlling population and family structure. For result interpretation, the program allows for linkage disequilibrium statistics to be calculated and visualized graphically. Database browsing and data importation is facilitated by integrated middleware. Other features include analyzing insertions/deletions, calculating diversity statistics, integration of phenotypic and genotypic data, imputing missing data and calculating principal components. Availability: The TASSEL executable, user manual, example data sets and tutorial document are freely available at http://www.maizegenetics.net/tassel. The source code for TASSEL can be found at http://sourceforge.net/projects/tassel. Contact: pjb39@cornell.edu</description><identifier>ISSN: 1367-4803</identifier><identifier>EISSN: 1460-2059</identifier><identifier>EISSN: 1367-4811</identifier><identifier>DOI: 10.1093/bioinformatics/btm308</identifier><identifier>PMID: 17586829</identifier><identifier>CODEN: BOINFP</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Algorithms ; Biological and medical sciences ; Chromosome Mapping - methods ; Data Interpretation, Statistical ; DNA Mutational Analysis - methods ; Fundamental and applied biological sciences. Psychology ; General aspects ; Genetic Variation - genetics ; Linkage Disequilibrium - genetics ; Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) ; Quantitative Trait Loci - genetics ; Software</subject><ispartof>Bioinformatics, 2007-10, Vol.23 (19), p.2633-2635</ispartof><rights>2007 The Author(s) 2007</rights><rights>2008 INIST-CNRS</rights><rights>2007 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c675t-d3095ed2a465260a3ce002d26964fa279b5bd1ffbb3cf1c834873928588bc6213</citedby><cites>FETCH-LOGICAL-c675t-d3095ed2a465260a3ce002d26964fa279b5bd1ffbb3cf1c834873928588bc6213</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,1598,27901,27902</link.rule.ids><linktorsrc>$$Uhttps://dx.doi.org/10.1093/bioinformatics/btm308$$EView_record_in_Oxford_University_Press$$FView_record_in_$$GOxford_University_Press</linktorsrc><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=19884203$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17586829$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bradbury, Peter J.</creatorcontrib><creatorcontrib>Zhang, Zhiwu</creatorcontrib><creatorcontrib>Kroon, Dallas E.</creatorcontrib><creatorcontrib>Casstevens, Terry M.</creatorcontrib><creatorcontrib>Ramdoss, Yogesh</creatorcontrib><creatorcontrib>Buckler, Edward S.</creatorcontrib><title>TASSEL: software for association mapping of complex traits in diverse samples</title><title>Bioinformatics</title><addtitle>Bioinformatics</addtitle><description>Association analyses that exploit the natural diversity of a genome to map at very high resolutions are becoming increasingly important. In most studies, however, researchers must contend with the confounding effects of both population and family structure. TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) implements general linear model and mixed linear model approaches for controlling population and family structure. For result interpretation, the program allows for linkage disequilibrium statistics to be calculated and visualized graphically. Database browsing and data importation is facilitated by integrated middleware. Other features include analyzing insertions/deletions, calculating diversity statistics, integration of phenotypic and genotypic data, imputing missing data and calculating principal components. Availability: The TASSEL executable, user manual, example data sets and tutorial document are freely available at http://www.maizegenetics.net/tassel. The source code for TASSEL can be found at http://sourceforge.net/projects/tassel. Contact: pjb39@cornell.edu</description><subject>Algorithms</subject><subject>Biological and medical sciences</subject><subject>Chromosome Mapping - methods</subject><subject>Data Interpretation, Statistical</subject><subject>DNA Mutational Analysis - methods</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>General aspects</subject><subject>Genetic Variation - genetics</subject><subject>Linkage Disequilibrium - genetics</subject><subject>Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)</subject><subject>Quantitative Trait Loci - genetics</subject><subject>Software</subject><issn>1367-4803</issn><issn>1460-2059</issn><issn>1367-4811</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkc1u1TAQhSMEoqXwCCALCXah_o_NrqpKL3ARixZRsbEcx0YuSRw8CZS3x1e5ooJNWc1I850zmjlV9ZTgVwRrdtzGFMeQ8mDn6OC4nQeG1b3qkHCJa4qFvl96JpuaK8wOqkcA1xgLwjl_WB2QRiipqD6sPlyeXFycbV8jSGH-abNHxRNZgORicU4jGuw0xfErSgG5NEy9v0FztnEGFEfUxR8-g0dgdxN4XD0Itgf_ZF-Pqk9vzi5PN_X24_nb05Nt7WQj5rpjWAvfUculoBJb5jzGtKNSSx4sbXQr2o6E0LbMBeIU46phmiqhVOskJeyoern6Tjl9XzzMZojgfN_b0acFjFSc00bgO0HGhKJN-eddIMVcKqF34PN_wOu05LFca4hWUsry2wKJFXI5AWQfzJTjYPMvQ7DZxWf-js-s8RXds7350g6-u1Xt8yrAiz1gwdk-ZDu6CLecVopTzAqHVy4t03_vrldJhNnf_BHZ_M3IhjXCbK6-mPMrvZHv6Tvzmf0GKZ7HpQ</recordid><startdate>20071001</startdate><enddate>20071001</enddate><creator>Bradbury, Peter J.</creator><creator>Zhang, Zhiwu</creator><creator>Kroon, Dallas E.</creator><creator>Casstevens, Terry M.</creator><creator>Ramdoss, Yogesh</creator><creator>Buckler, Edward S.</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7TM</scope><scope>7TO</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>H94</scope><scope>JG9</scope><scope>JQ2</scope><scope>K9.</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20071001</creationdate><title>TASSEL: software for association mapping of complex traits in diverse samples</title><author>Bradbury, Peter J. ; Zhang, Zhiwu ; Kroon, Dallas E. ; Casstevens, Terry M. ; Ramdoss, Yogesh ; Buckler, Edward S.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c675t-d3095ed2a465260a3ce002d26964fa279b5bd1ffbb3cf1c834873928588bc6213</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Algorithms</topic><topic>Biological and medical sciences</topic><topic>Chromosome Mapping - methods</topic><topic>Data Interpretation, Statistical</topic><topic>DNA Mutational Analysis - methods</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>General aspects</topic><topic>Genetic Variation - genetics</topic><topic>Linkage Disequilibrium - genetics</topic><topic>Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)</topic><topic>Quantitative Trait Loci - genetics</topic><topic>Software</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bradbury, Peter J.</creatorcontrib><creatorcontrib>Zhang, Zhiwu</creatorcontrib><creatorcontrib>Kroon, Dallas E.</creatorcontrib><creatorcontrib>Casstevens, Terry M.</creatorcontrib><creatorcontrib>Ramdoss, Yogesh</creatorcontrib><creatorcontrib>Buckler, Edward S.</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Copper Technical Reference Library</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Bioinformatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Bradbury, Peter J.</au><au>Zhang, Zhiwu</au><au>Kroon, Dallas E.</au><au>Casstevens, Terry M.</au><au>Ramdoss, Yogesh</au><au>Buckler, Edward S.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>TASSEL: software for association mapping of complex traits in diverse samples</atitle><jtitle>Bioinformatics</jtitle><addtitle>Bioinformatics</addtitle><date>2007-10-01</date><risdate>2007</risdate><volume>23</volume><issue>19</issue><spage>2633</spage><epage>2635</epage><pages>2633-2635</pages><issn>1367-4803</issn><eissn>1460-2059</eissn><eissn>1367-4811</eissn><coden>BOINFP</coden><abstract>Association analyses that exploit the natural diversity of a genome to map at very high resolutions are becoming increasingly important. In most studies, however, researchers must contend with the confounding effects of both population and family structure. TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) implements general linear model and mixed linear model approaches for controlling population and family structure. For result interpretation, the program allows for linkage disequilibrium statistics to be calculated and visualized graphically. Database browsing and data importation is facilitated by integrated middleware. Other features include analyzing insertions/deletions, calculating diversity statistics, integration of phenotypic and genotypic data, imputing missing data and calculating principal components. Availability: The TASSEL executable, user manual, example data sets and tutorial document are freely available at http://www.maizegenetics.net/tassel. The source code for TASSEL can be found at http://sourceforge.net/projects/tassel. Contact: pjb39@cornell.edu</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>17586829</pmid><doi>10.1093/bioinformatics/btm308</doi><tpages>3</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext_linktorsrc |
| identifier | ISSN: 1367-4803 |
| ispartof | Bioinformatics, 2007-10, Vol.23 (19), p.2633-2635 |
| issn | 1367-4803 1460-2059 1367-4811 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_68442750 |
| source | Oxford Journals Open Access Collection |
| subjects | Algorithms Biological and medical sciences Chromosome Mapping - methods Data Interpretation, Statistical DNA Mutational Analysis - methods Fundamental and applied biological sciences. Psychology General aspects Genetic Variation - genetics Linkage Disequilibrium - genetics Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Quantitative Trait Loci - genetics Software |
| title | TASSEL: software for association mapping of complex traits in diverse samples |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-03T02%3A26%3A42IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_TOX&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=TASSEL:%20software%20for%20association%20mapping%20of%20complex%20traits%20in%20diverse%20samples&rft.jtitle=Bioinformatics&rft.au=Bradbury,%20Peter%20J.&rft.date=2007-10-01&rft.volume=23&rft.issue=19&rft.spage=2633&rft.epage=2635&rft.pages=2633-2635&rft.issn=1367-4803&rft.eissn=1460-2059&rft.coden=BOINFP&rft_id=info:doi/10.1093/bioinformatics/btm308&rft_dat=%3Cproquest_TOX%3E1375820341%3C/proquest_TOX%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=198666175&rft_id=info:pmid/17586829&rft_oup_id=10.1093/bioinformatics/btm308&rfr_iscdi=true |