Fungal Diversity, Dominance, and Community Structure in the Rhizosphere of Clonal Picea mariana Plants Throughout Nursery Production Chronosequences
Fungal diversity in the rhizosphere of healthy and diseased clonal black spruce (Picea mariana) plants was analyzed with regard to nursery production chronosequences. The four key production stages were sampled: mother plants (MP), 8-week-old cuttings (B + 0), second-year cuttings (B + 1), and third...
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| Veröffentlicht in: | Microbial ecology 2007-11, Vol.54 (4), p.672-684 |
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| description | Fungal diversity in the rhizosphere of healthy and diseased clonal black spruce (Picea mariana) plants was analyzed with regard to nursery production chronosequences. The four key production stages were sampled: mother plants (MP), 8-week-old cuttings (B + 0), second-year cuttings (B + 1), and third-year cuttings (B + 2). A total of 45 fungal taxa were isolated and identified based on cultural, phenotypic, and molecular characters. Members of phylum Ascomycota dominated, followed by Basidiomycota and Zygomycota. Diagnosis characters and distance analysis of the internal transcribed spacer rDNA sequences allowed the identification of 39 ascomycetous taxa. Many belong to the order Hypocreales, families Hypocreaceae and Nectriaceae, which contain many clusters of potentially pathogenic taxa (Cylindrocladium, Fusarium, and Neonectria) and are also ecologically associated with antagonistic taxa (Chaetomium, Hypocrea, Microsphaeropsis, Penicillium, Paecilomyces, Verticillium, Trichoderma, and Sporothrix). This is also the first report of a Cylindrocladium canadense association with disease symptoms and relation with Pestalotiopsis, Fusarium, Exserochilum, Rhizoctonia, and Xenochalara fungal consortia. Both production chronosequence and plant health considerably influenced fungal taxa assemblages. Unweighted pair-group arithmetic average clustering showed that isolates from MP, B + 0, and B + 1 plant rhizospheres clustered together within healthy or diseased health classes, whereas isolates from healthy and diseased B + 2 plants clustered together. Canonical correspondence analysis revealed substantial alteration in community assemblages with regard to plant health and yielded a principal axis direction that regrouped taxa associated with diseased plant rhizosphere soil, whereas the opposite axis direction was associated with healthy plants. Two diversity indices were defined and applied to assess the fungal taxa contribution (Tc) and persistence (Pi) throughout the production. |
| doi_str_mv | 10.1007/s00248-007-9226-1 |
| format | Article |
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C ; Bernier, L ; Vujanovic, G ; St-Arnaud, M</creator><creatorcontrib>Vujanovic, V ; Hamelin, R. C ; Bernier, L ; Vujanovic, G ; St-Arnaud, M</creatorcontrib><description>Fungal diversity in the rhizosphere of healthy and diseased clonal black spruce (Picea mariana) plants was analyzed with regard to nursery production chronosequences. The four key production stages were sampled: mother plants (MP), 8-week-old cuttings (B + 0), second-year cuttings (B + 1), and third-year cuttings (B + 2). A total of 45 fungal taxa were isolated and identified based on cultural, phenotypic, and molecular characters. Members of phylum Ascomycota dominated, followed by Basidiomycota and Zygomycota. Diagnosis characters and distance analysis of the internal transcribed spacer rDNA sequences allowed the identification of 39 ascomycetous taxa. Many belong to the order Hypocreales, families Hypocreaceae and Nectriaceae, which contain many clusters of potentially pathogenic taxa (Cylindrocladium, Fusarium, and Neonectria) and are also ecologically associated with antagonistic taxa (Chaetomium, Hypocrea, Microsphaeropsis, Penicillium, Paecilomyces, Verticillium, Trichoderma, and Sporothrix). This is also the first report of a Cylindrocladium canadense association with disease symptoms and relation with Pestalotiopsis, Fusarium, Exserochilum, Rhizoctonia, and Xenochalara fungal consortia. Both production chronosequence and plant health considerably influenced fungal taxa assemblages. Unweighted pair-group arithmetic average clustering showed that isolates from MP, B + 0, and B + 1 plant rhizospheres clustered together within healthy or diseased health classes, whereas isolates from healthy and diseased B + 2 plants clustered together. Canonical correspondence analysis revealed substantial alteration in community assemblages with regard to plant health and yielded a principal axis direction that regrouped taxa associated with diseased plant rhizosphere soil, whereas the opposite axis direction was associated with healthy plants. Two diversity indices were defined and applied to assess the fungal taxa contribution (Tc) and persistence (Pi) throughout the production.</description><identifier>ISSN: 0095-3628</identifier><identifier>EISSN: 1432-184X</identifier><identifier>DOI: 10.1007/s00248-007-9226-1</identifier><identifier>PMID: 17347891</identifier><identifier>CODEN: MCBEBU</identifier><language>eng</language><publisher>New York, NY: New York : Springer-Verlag</publisher><subject>Ascomycota ; Ascomycota - classification ; Ascomycota - genetics ; Ascomycota - isolation & purification ; Basidiomycota ; Biological and medical sciences ; Chaetomium ; chronosequences ; Community structure ; Cuttings ; Cylindrocladium ; Diversity indices ; DNA, Fungal - analysis ; DNA, Ribosomal Spacer - analysis ; Ecosystem ; Fundamental and applied biological sciences. Psychology ; fungal antagonists ; fungal diseases of plants ; Fungi ; Fungi - classification ; Fungi - genetics ; Fungi - isolation & purification ; Fusarium ; Hypocrea ; Hypocreaceae ; internal transcribed spacers ; Microbiology ; Microsphaeropsis ; Molecular Sequence Data ; Nectriaceae ; nursery crops ; Paecilomyces ; Pathogens ; Penicillium ; Pestalotiopsis ; Phylogeny ; Picea - growth & development ; Picea - microbiology ; Picea mariana ; Plant diseases ; Plant Diseases - microbiology ; plant nurseries ; plant pathogenic bacteria ; Plant roots ; Plant Roots - microbiology ; Plants ; Rhizoctonia ; Rhizosphere ; ribosomal DNA ; Seedlings ; Sequence Analysis, DNA ; soil ; Soil fungi ; Soil Microbiology ; species diversity ; Sporothrix ; Taxa ; Trichoderma ; Verticillium ; Zygomycota</subject><ispartof>Microbial ecology, 2007-11, Vol.54 (4), p.672-684</ispartof><rights>Copyright 2007 Springer Science+Business Media, Inc.</rights><rights>2008 INIST-CNRS</rights><rights>Springer Science+Business Media, LLC 2007</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c433t-348fb30831755e231dae8a3123f10e17a613e2aec0941b8b36022361493a29953</citedby><cites>FETCH-LOGICAL-c433t-348fb30831755e231dae8a3123f10e17a613e2aec0941b8b36022361493a29953</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/25256239$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/25256239$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,803,27924,27925,58017,58250</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=19375717$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17347891$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Vujanovic, V</creatorcontrib><creatorcontrib>Hamelin, R. C</creatorcontrib><creatorcontrib>Bernier, L</creatorcontrib><creatorcontrib>Vujanovic, G</creatorcontrib><creatorcontrib>St-Arnaud, M</creatorcontrib><title>Fungal Diversity, Dominance, and Community Structure in the Rhizosphere of Clonal Picea mariana Plants Throughout Nursery Production Chronosequences</title><title>Microbial ecology</title><addtitle>Microb Ecol</addtitle><description>Fungal diversity in the rhizosphere of healthy and diseased clonal black spruce (Picea mariana) plants was analyzed with regard to nursery production chronosequences. The four key production stages were sampled: mother plants (MP), 8-week-old cuttings (B + 0), second-year cuttings (B + 1), and third-year cuttings (B + 2). A total of 45 fungal taxa were isolated and identified based on cultural, phenotypic, and molecular characters. Members of phylum Ascomycota dominated, followed by Basidiomycota and Zygomycota. Diagnosis characters and distance analysis of the internal transcribed spacer rDNA sequences allowed the identification of 39 ascomycetous taxa. Many belong to the order Hypocreales, families Hypocreaceae and Nectriaceae, which contain many clusters of potentially pathogenic taxa (Cylindrocladium, Fusarium, and Neonectria) and are also ecologically associated with antagonistic taxa (Chaetomium, Hypocrea, Microsphaeropsis, Penicillium, Paecilomyces, Verticillium, Trichoderma, and Sporothrix). This is also the first report of a Cylindrocladium canadense association with disease symptoms and relation with Pestalotiopsis, Fusarium, Exserochilum, Rhizoctonia, and Xenochalara fungal consortia. Both production chronosequence and plant health considerably influenced fungal taxa assemblages. Unweighted pair-group arithmetic average clustering showed that isolates from MP, B + 0, and B + 1 plant rhizospheres clustered together within healthy or diseased health classes, whereas isolates from healthy and diseased B + 2 plants clustered together. Canonical correspondence analysis revealed substantial alteration in community assemblages with regard to plant health and yielded a principal axis direction that regrouped taxa associated with diseased plant rhizosphere soil, whereas the opposite axis direction was associated with healthy plants. Two diversity indices were defined and applied to assess the fungal taxa contribution (Tc) and persistence (Pi) throughout the production.</description><subject>Ascomycota</subject><subject>Ascomycota - classification</subject><subject>Ascomycota - genetics</subject><subject>Ascomycota - isolation & purification</subject><subject>Basidiomycota</subject><subject>Biological and medical sciences</subject><subject>Chaetomium</subject><subject>chronosequences</subject><subject>Community structure</subject><subject>Cuttings</subject><subject>Cylindrocladium</subject><subject>Diversity indices</subject><subject>DNA, Fungal - analysis</subject><subject>DNA, Ribosomal Spacer - analysis</subject><subject>Ecosystem</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>fungal antagonists</subject><subject>fungal diseases of plants</subject><subject>Fungi</subject><subject>Fungi - classification</subject><subject>Fungi - genetics</subject><subject>Fungi - isolation & purification</subject><subject>Fusarium</subject><subject>Hypocrea</subject><subject>Hypocreaceae</subject><subject>internal transcribed spacers</subject><subject>Microbiology</subject><subject>Microsphaeropsis</subject><subject>Molecular Sequence Data</subject><subject>Nectriaceae</subject><subject>nursery crops</subject><subject>Paecilomyces</subject><subject>Pathogens</subject><subject>Penicillium</subject><subject>Pestalotiopsis</subject><subject>Phylogeny</subject><subject>Picea - growth & development</subject><subject>Picea - microbiology</subject><subject>Picea mariana</subject><subject>Plant diseases</subject><subject>Plant Diseases - microbiology</subject><subject>plant nurseries</subject><subject>plant pathogenic bacteria</subject><subject>Plant roots</subject><subject>Plant Roots - microbiology</subject><subject>Plants</subject><subject>Rhizoctonia</subject><subject>Rhizosphere</subject><subject>ribosomal DNA</subject><subject>Seedlings</subject><subject>Sequence Analysis, DNA</subject><subject>soil</subject><subject>Soil fungi</subject><subject>Soil Microbiology</subject><subject>species diversity</subject><subject>Sporothrix</subject><subject>Taxa</subject><subject>Trichoderma</subject><subject>Verticillium</subject><subject>Zygomycota</subject><issn>0095-3628</issn><issn>1432-184X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFksFu1DAQhiMEokvhATgAFlI5NTBjJ7F9RGkLSBWsaCtxi7xZZ-NVYm_tGGl5Dh4Yr7KiEhdOHvn__M9ofmfZS4T3CMA_BABaiDyVuaS0yvFRtsCC0RxF8eNxtgCQZc4qKk6yZyFsAZBXlD3NTpCzgguJi-z3VbQbNZAL81P7YKb9Oblwo7HKtvqcKLsmtRvHaJNCbiYf2yl6TYwlU6_J9978cmHX63TlOlIPziarpWm1IqPyRllFloOyUyC3vXdx07s4ka_RB-33ZOndOvkZZ0mdVOuCvo869Q3PsyedGoJ-cTxPs7ury9v6c3797dOX-uN13haMTTkrRLdiIBjystSU4VppoRhS1iFo5KpCpqnSLcgCV2LFKqCUVVhIpqiUJTvN3s2-O-9S6zA1owmtHtLI2sXQVKKgpYTqvyCFquRCQALf_gNuXfRpK6ERFBFLjjJBOEOtdyF43TU7b9K-9g1Ccwi2mYNtDuUh2AbTm9dH47ga9frhxTHJBJwdARVaNXQ-JWjCAycZT8154l7N3DZMzv_VaUnL9DcOw72Z9U65Rm188ri7oYAMQKDkULI_-j2-bw</recordid><startdate>20071101</startdate><enddate>20071101</enddate><creator>Vujanovic, V</creator><creator>Hamelin, R. 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C ; Bernier, L ; Vujanovic, G ; St-Arnaud, M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c433t-348fb30831755e231dae8a3123f10e17a613e2aec0941b8b36022361493a29953</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Ascomycota</topic><topic>Ascomycota - classification</topic><topic>Ascomycota - genetics</topic><topic>Ascomycota - isolation & purification</topic><topic>Basidiomycota</topic><topic>Biological and medical sciences</topic><topic>Chaetomium</topic><topic>chronosequences</topic><topic>Community structure</topic><topic>Cuttings</topic><topic>Cylindrocladium</topic><topic>Diversity indices</topic><topic>DNA, Fungal - analysis</topic><topic>DNA, Ribosomal Spacer - analysis</topic><topic>Ecosystem</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>fungal antagonists</topic><topic>fungal diseases of plants</topic><topic>Fungi</topic><topic>Fungi - classification</topic><topic>Fungi - genetics</topic><topic>Fungi - isolation & purification</topic><topic>Fusarium</topic><topic>Hypocrea</topic><topic>Hypocreaceae</topic><topic>internal transcribed spacers</topic><topic>Microbiology</topic><topic>Microsphaeropsis</topic><topic>Molecular Sequence Data</topic><topic>Nectriaceae</topic><topic>nursery crops</topic><topic>Paecilomyces</topic><topic>Pathogens</topic><topic>Penicillium</topic><topic>Pestalotiopsis</topic><topic>Phylogeny</topic><topic>Picea - growth & development</topic><topic>Picea - microbiology</topic><topic>Picea mariana</topic><topic>Plant diseases</topic><topic>Plant Diseases - microbiology</topic><topic>plant nurseries</topic><topic>plant pathogenic bacteria</topic><topic>Plant roots</topic><topic>Plant Roots - microbiology</topic><topic>Plants</topic><topic>Rhizoctonia</topic><topic>Rhizosphere</topic><topic>ribosomal DNA</topic><topic>Seedlings</topic><topic>Sequence Analysis, DNA</topic><topic>soil</topic><topic>Soil fungi</topic><topic>Soil Microbiology</topic><topic>species diversity</topic><topic>Sporothrix</topic><topic>Taxa</topic><topic>Trichoderma</topic><topic>Verticillium</topic><topic>Zygomycota</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Vujanovic, V</creatorcontrib><creatorcontrib>Hamelin, R. 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C</au><au>Bernier, L</au><au>Vujanovic, G</au><au>St-Arnaud, M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fungal Diversity, Dominance, and Community Structure in the Rhizosphere of Clonal Picea mariana Plants Throughout Nursery Production Chronosequences</atitle><jtitle>Microbial ecology</jtitle><addtitle>Microb Ecol</addtitle><date>2007-11-01</date><risdate>2007</risdate><volume>54</volume><issue>4</issue><spage>672</spage><epage>684</epage><pages>672-684</pages><issn>0095-3628</issn><eissn>1432-184X</eissn><coden>MCBEBU</coden><abstract>Fungal diversity in the rhizosphere of healthy and diseased clonal black spruce (Picea mariana) plants was analyzed with regard to nursery production chronosequences. The four key production stages were sampled: mother plants (MP), 8-week-old cuttings (B + 0), second-year cuttings (B + 1), and third-year cuttings (B + 2). A total of 45 fungal taxa were isolated and identified based on cultural, phenotypic, and molecular characters. Members of phylum Ascomycota dominated, followed by Basidiomycota and Zygomycota. Diagnosis characters and distance analysis of the internal transcribed spacer rDNA sequences allowed the identification of 39 ascomycetous taxa. Many belong to the order Hypocreales, families Hypocreaceae and Nectriaceae, which contain many clusters of potentially pathogenic taxa (Cylindrocladium, Fusarium, and Neonectria) and are also ecologically associated with antagonistic taxa (Chaetomium, Hypocrea, Microsphaeropsis, Penicillium, Paecilomyces, Verticillium, Trichoderma, and Sporothrix). This is also the first report of a Cylindrocladium canadense association with disease symptoms and relation with Pestalotiopsis, Fusarium, Exserochilum, Rhizoctonia, and Xenochalara fungal consortia. Both production chronosequence and plant health considerably influenced fungal taxa assemblages. Unweighted pair-group arithmetic average clustering showed that isolates from MP, B + 0, and B + 1 plant rhizospheres clustered together within healthy or diseased health classes, whereas isolates from healthy and diseased B + 2 plants clustered together. Canonical correspondence analysis revealed substantial alteration in community assemblages with regard to plant health and yielded a principal axis direction that regrouped taxa associated with diseased plant rhizosphere soil, whereas the opposite axis direction was associated with healthy plants. Two diversity indices were defined and applied to assess the fungal taxa contribution (Tc) and persistence (Pi) throughout the production.</abstract><cop>New York, NY</cop><pub>New York : Springer-Verlag</pub><pmid>17347891</pmid><doi>10.1007/s00248-007-9226-1</doi><tpages>13</tpages></addata></record> |
| fulltext | fulltext |
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| ispartof | Microbial ecology, 2007-11, Vol.54 (4), p.672-684 |
| issn | 0095-3628 1432-184X |
| language | eng |
| recordid | cdi_proquest_miscellaneous_68425906 |
| source | MEDLINE; JSTOR Archive Collection A-Z Listing; SpringerLink Journals - AutoHoldings |
| subjects | Ascomycota Ascomycota - classification Ascomycota - genetics Ascomycota - isolation & purification Basidiomycota Biological and medical sciences Chaetomium chronosequences Community structure Cuttings Cylindrocladium Diversity indices DNA, Fungal - analysis DNA, Ribosomal Spacer - analysis Ecosystem Fundamental and applied biological sciences. Psychology fungal antagonists fungal diseases of plants Fungi Fungi - classification Fungi - genetics Fungi - isolation & purification Fusarium Hypocrea Hypocreaceae internal transcribed spacers Microbiology Microsphaeropsis Molecular Sequence Data Nectriaceae nursery crops Paecilomyces Pathogens Penicillium Pestalotiopsis Phylogeny Picea - growth & development Picea - microbiology Picea mariana Plant diseases Plant Diseases - microbiology plant nurseries plant pathogenic bacteria Plant roots Plant Roots - microbiology Plants Rhizoctonia Rhizosphere ribosomal DNA Seedlings Sequence Analysis, DNA soil Soil fungi Soil Microbiology species diversity Sporothrix Taxa Trichoderma Verticillium Zygomycota |
| title | Fungal Diversity, Dominance, and Community Structure in the Rhizosphere of Clonal Picea mariana Plants Throughout Nursery Production Chronosequences |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-27T03%3A14%3A09IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-jstor_proqu&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Fungal%20Diversity,%20Dominance,%20and%20Community%20Structure%20in%20the%20Rhizosphere%20of%20Clonal%20Picea%20mariana%20Plants%20Throughout%20Nursery%20Production%20Chronosequences&rft.jtitle=Microbial%20ecology&rft.au=Vujanovic,%20V&rft.date=2007-11-01&rft.volume=54&rft.issue=4&rft.spage=672&rft.epage=684&rft.pages=672-684&rft.issn=0095-3628&rft.eissn=1432-184X&rft.coden=MCBEBU&rft_id=info:doi/10.1007/s00248-007-9226-1&rft_dat=%3Cjstor_proqu%3E25256239%3C/jstor_proqu%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=821115719&rft_id=info:pmid/17347891&rft_jstor_id=25256239&rfr_iscdi=true |