Satellite-DNA evolutionary patterns under a complex evolutionary scenario: The case of Acrolophus subgroup ( Centaurea L., Compositae) from the western Mediterranean
Within the genus Centaurea (subtribe Centaureinae, tribe Cardueae, Compositae) hybridizations and reticulate-evolution phenomena have widely been recognized. This is especially true in the taxa included in the subgroup Acrolophus from the western Mediterranean area, in which recurrent hybridizations...
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creator | Suárez-Santiago, Víctor N. Blanca, Gabriel Ruiz-Rejón, Manuel Garrido-Ramos, Manuel A. |
description | Within the genus
Centaurea (subtribe Centaureinae, tribe Cardueae, Compositae) hybridizations and reticulate-evolution phenomena have widely been recognized. This is especially true in the taxa included in the subgroup
Acrolophus from the western Mediterranean area, in which recurrent hybridizations of parapatric (“microallopatric”) lineages within the geographical range of a primary radiation have been suggested. The subgroup
Acrolophus includes taxa from three sections (i.e.
Acrolophus,
Phalolepis and
Willkommia), and, together with other subgroups, forms the named
Jacea group (one of the three main groups into which
Centaurea is divided). In this paper, we have studied the influence that the complex evolutionary scenario described for the
Acrolophus subgroup from the western Mediterranean exerts on the evolutionary pattern of a satellite-DNA family, the
HinfI family, which exists within the genomes of these taxa. To this end, we have analyzed the evolution of this satellite-DNA family in taxa from different taxonomic comparative levels: i) seven subspecies of the
C. boissieri complex (one of which with two varieties) of the sect.
Willkommia; ii) species of the sections
Willkommia (10 species, 19 taxa),
Acrolophus (two species), and
Phalolepis (two species), all in the
Acrolophus subgroup; iii) one external species to the
Jacea group,
C. granatensis from the group
Acrocentron; iv) and species from other related genera from the Centaureinae subtribe (
Phonus and
Carthamus, both belonging to the
Carthamus group). The influence of the suggested model for the origin and diversification of the
Acrolophus subgroup is evidenced by the existence of three different
HinfI satellite-DNA subfamilies coexisting in some genomes, and by the analysis that we have made by comparing site-by-site the transition stages in the process of concerted evolution between the sequences of the each subfamily. From this analysis, we can deduce that the
HinfI repeated subfamilies evolved in a gradual manner, and that the different stages of concerted evolution fit quite well with the combined nuclear–chloroplast-DNA-deduced divergences and phylogeny of the subtribe Centaureinae. The
HinfI satellite-DNA from the
Carthamus species group (genera
Carthamus and
Phonus) and from the
Acrocentron group (
Centaurea granatensis) shows a high intraspecific conservation of the repeats, suggesting that the mechanisms producing concerted evolution have been efficient in these taxa. In addition, the |
doi_str_mv | 10.1016/j.gene.2007.09.001 |
format | Article |
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Centaurea (subtribe Centaureinae, tribe Cardueae, Compositae) hybridizations and reticulate-evolution phenomena have widely been recognized. This is especially true in the taxa included in the subgroup
Acrolophus from the western Mediterranean area, in which recurrent hybridizations of parapatric (“microallopatric”) lineages within the geographical range of a primary radiation have been suggested. The subgroup
Acrolophus includes taxa from three sections (i.e.
Acrolophus,
Phalolepis and
Willkommia), and, together with other subgroups, forms the named
Jacea group (one of the three main groups into which
Centaurea is divided). In this paper, we have studied the influence that the complex evolutionary scenario described for the
Acrolophus subgroup from the western Mediterranean exerts on the evolutionary pattern of a satellite-DNA family, the
HinfI family, which exists within the genomes of these taxa. To this end, we have analyzed the evolution of this satellite-DNA family in taxa from different taxonomic comparative levels: i) seven subspecies of the
C. boissieri complex (one of which with two varieties) of the sect.
Willkommia; ii) species of the sections
Willkommia (10 species, 19 taxa),
Acrolophus (two species), and
Phalolepis (two species), all in the
Acrolophus subgroup; iii) one external species to the
Jacea group,
C. granatensis from the group
Acrocentron; iv) and species from other related genera from the Centaureinae subtribe (
Phonus and
Carthamus, both belonging to the
Carthamus group). The influence of the suggested model for the origin and diversification of the
Acrolophus subgroup is evidenced by the existence of three different
HinfI satellite-DNA subfamilies coexisting in some genomes, and by the analysis that we have made by comparing site-by-site the transition stages in the process of concerted evolution between the sequences of the each subfamily. From this analysis, we can deduce that the
HinfI repeated subfamilies evolved in a gradual manner, and that the different stages of concerted evolution fit quite well with the combined nuclear–chloroplast-DNA-deduced divergences and phylogeny of the subtribe Centaureinae. The
HinfI satellite-DNA from the
Carthamus species group (genera
Carthamus and
Phonus) and from the
Acrocentron group (
Centaurea granatensis) shows a high intraspecific conservation of the repeats, suggesting that the mechanisms producing concerted evolution have been efficient in these taxa. In addition, the comparison of individual nucleotide positions between related species shows a paucity in the spreading of variants in each subfamily with satellite-DNA divergence, an indication of a constant rate of homogenization of the repeated cluster. On the contrary, this trend is absent in the comparisons of the
HinfI sequences from taxa of the subgroup
Acrolophus. In this subgroup, we have found in this repetitive family similar representative average sequences for each taxon analyzed, polymorphic sites in each taxon being scant, most of them autapomorphic, representing early stages of genetic differentiation between taxa in the process of concerted evolution. The absence of concerted evolution was visualized by similar levels of intraspecific variation and interspecific divergence and by the lack of fixed species-diagnostic nucleotide sites. These facts might reflect the reticulate mode of evolution of
Acrolophus.</description><identifier>ISSN: 0378-1119</identifier><identifier>EISSN: 1879-0038</identifier><identifier>DOI: 10.1016/j.gene.2007.09.001</identifier><identifier>PMID: 17905542</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Acrolophus ; Asteraceae - classification ; Asteraceae - genetics ; Base Sequence ; Centaurea ; Centaurea - classification ; Centaurea - genetics ; Concerted evolution ; Deoxyribonucleases, Type II Site-Specific - chemistry ; DNA, Plant - chemistry ; DNA, Plant - genetics ; DNA, Satellite ; Evolution, Molecular ; Mediterranean Region ; Molecular Sequence Data ; Phylogeny ; Radiation ; Reticulate evolution ; Satellite-DNA ; Sequence Analysis, DNA ; Willkommia</subject><ispartof>Gene, 2007-12, Vol.404 (1), p.80-92</ispartof><rights>2007 Elsevier B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c385t-b4fdeb101e61895ea63f1fe2594ea6fd30ed20ca342e9f87387d99125f707a8b3</citedby><cites>FETCH-LOGICAL-c385t-b4fdeb101e61895ea63f1fe2594ea6fd30ed20ca342e9f87387d99125f707a8b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.gene.2007.09.001$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17905542$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Suárez-Santiago, Víctor N.</creatorcontrib><creatorcontrib>Blanca, Gabriel</creatorcontrib><creatorcontrib>Ruiz-Rejón, Manuel</creatorcontrib><creatorcontrib>Garrido-Ramos, Manuel A.</creatorcontrib><title>Satellite-DNA evolutionary patterns under a complex evolutionary scenario: The case of Acrolophus subgroup ( Centaurea L., Compositae) from the western Mediterranean</title><title>Gene</title><addtitle>Gene</addtitle><description>Within the genus
Centaurea (subtribe Centaureinae, tribe Cardueae, Compositae) hybridizations and reticulate-evolution phenomena have widely been recognized. This is especially true in the taxa included in the subgroup
Acrolophus from the western Mediterranean area, in which recurrent hybridizations of parapatric (“microallopatric”) lineages within the geographical range of a primary radiation have been suggested. The subgroup
Acrolophus includes taxa from three sections (i.e.
Acrolophus,
Phalolepis and
Willkommia), and, together with other subgroups, forms the named
Jacea group (one of the three main groups into which
Centaurea is divided). In this paper, we have studied the influence that the complex evolutionary scenario described for the
Acrolophus subgroup from the western Mediterranean exerts on the evolutionary pattern of a satellite-DNA family, the
HinfI family, which exists within the genomes of these taxa. To this end, we have analyzed the evolution of this satellite-DNA family in taxa from different taxonomic comparative levels: i) seven subspecies of the
C. boissieri complex (one of which with two varieties) of the sect.
Willkommia; ii) species of the sections
Willkommia (10 species, 19 taxa),
Acrolophus (two species), and
Phalolepis (two species), all in the
Acrolophus subgroup; iii) one external species to the
Jacea group,
C. granatensis from the group
Acrocentron; iv) and species from other related genera from the Centaureinae subtribe (
Phonus and
Carthamus, both belonging to the
Carthamus group). The influence of the suggested model for the origin and diversification of the
Acrolophus subgroup is evidenced by the existence of three different
HinfI satellite-DNA subfamilies coexisting in some genomes, and by the analysis that we have made by comparing site-by-site the transition stages in the process of concerted evolution between the sequences of the each subfamily. From this analysis, we can deduce that the
HinfI repeated subfamilies evolved in a gradual manner, and that the different stages of concerted evolution fit quite well with the combined nuclear–chloroplast-DNA-deduced divergences and phylogeny of the subtribe Centaureinae. The
HinfI satellite-DNA from the
Carthamus species group (genera
Carthamus and
Phonus) and from the
Acrocentron group (
Centaurea granatensis) shows a high intraspecific conservation of the repeats, suggesting that the mechanisms producing concerted evolution have been efficient in these taxa. In addition, the comparison of individual nucleotide positions between related species shows a paucity in the spreading of variants in each subfamily with satellite-DNA divergence, an indication of a constant rate of homogenization of the repeated cluster. On the contrary, this trend is absent in the comparisons of the
HinfI sequences from taxa of the subgroup
Acrolophus. In this subgroup, we have found in this repetitive family similar representative average sequences for each taxon analyzed, polymorphic sites in each taxon being scant, most of them autapomorphic, representing early stages of genetic differentiation between taxa in the process of concerted evolution. The absence of concerted evolution was visualized by similar levels of intraspecific variation and interspecific divergence and by the lack of fixed species-diagnostic nucleotide sites. These facts might reflect the reticulate mode of evolution of
Acrolophus.</description><subject>Acrolophus</subject><subject>Asteraceae - classification</subject><subject>Asteraceae - genetics</subject><subject>Base Sequence</subject><subject>Centaurea</subject><subject>Centaurea - classification</subject><subject>Centaurea - genetics</subject><subject>Concerted evolution</subject><subject>Deoxyribonucleases, Type II Site-Specific - chemistry</subject><subject>DNA, Plant - chemistry</subject><subject>DNA, Plant - genetics</subject><subject>DNA, Satellite</subject><subject>Evolution, Molecular</subject><subject>Mediterranean Region</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Radiation</subject><subject>Reticulate evolution</subject><subject>Satellite-DNA</subject><subject>Sequence Analysis, DNA</subject><subject>Willkommia</subject><issn>0378-1119</issn><issn>1879-0038</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc9u1DAQxi1ERbeFF-CAfEJUIsGOkzhGXFYLFKQFDpSz5STjNqskTv2n0AfiPZnVroS4UF9mDr_5PPN9hDznLOeM1292-TXMkBeMyZypnDH-iKx4I1XGmGgekxUTssk45-qUnIWwY_iqqnhCTrlU2JXFivz-biKM4xAhe_91TeHOjSkObjb-ni4mRvBzoGnuwVNDOzctI_z6lwodYB3cW3p1A7QzAaizdN15N7rlJgUaUnvtXVroK7qBOZrkwdBt_ppuUM6FIRq4oNa7iUYU-Alh_yn9Aj0u5b2ZwcxPyYk1Y4Bnx3pOfnz8cLX5lG2_XX7erLdZJ5oqZm1pe2jRG6h5oyowtbDcQlGpEnvbCwZ9wTojygKUbaRoZK8ULyormTRNK87Jy4Pu4t1twk30NOB944hbuBR03ZS8YqJ4EORKCsnrCsHiAKIfIXiwevHDhL5pzvQ-Rb3T-xT1PkXNlMYUcejFUT21E_R_R46xIfDuAACacTeA16EbYO7QMw9d1L0b_qf_B7WIsRE</recordid><startdate>20071201</startdate><enddate>20071201</enddate><creator>Suárez-Santiago, Víctor N.</creator><creator>Blanca, Gabriel</creator><creator>Ruiz-Rejón, Manuel</creator><creator>Garrido-Ramos, Manuel A.</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TM</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20071201</creationdate><title>Satellite-DNA evolutionary patterns under a complex evolutionary scenario: The case of Acrolophus subgroup ( Centaurea L., Compositae) from the western Mediterranean</title><author>Suárez-Santiago, Víctor N. ; Blanca, Gabriel ; Ruiz-Rejón, Manuel ; Garrido-Ramos, Manuel A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c385t-b4fdeb101e61895ea63f1fe2594ea6fd30ed20ca342e9f87387d99125f707a8b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Acrolophus</topic><topic>Asteraceae - classification</topic><topic>Asteraceae - genetics</topic><topic>Base Sequence</topic><topic>Centaurea</topic><topic>Centaurea - classification</topic><topic>Centaurea - genetics</topic><topic>Concerted evolution</topic><topic>Deoxyribonucleases, Type II Site-Specific - chemistry</topic><topic>DNA, Plant - chemistry</topic><topic>DNA, Plant - genetics</topic><topic>DNA, Satellite</topic><topic>Evolution, Molecular</topic><topic>Mediterranean Region</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Radiation</topic><topic>Reticulate evolution</topic><topic>Satellite-DNA</topic><topic>Sequence Analysis, DNA</topic><topic>Willkommia</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Suárez-Santiago, Víctor N.</creatorcontrib><creatorcontrib>Blanca, Gabriel</creatorcontrib><creatorcontrib>Ruiz-Rejón, Manuel</creatorcontrib><creatorcontrib>Garrido-Ramos, Manuel A.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Gene</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Suárez-Santiago, Víctor N.</au><au>Blanca, Gabriel</au><au>Ruiz-Rejón, Manuel</au><au>Garrido-Ramos, Manuel A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Satellite-DNA evolutionary patterns under a complex evolutionary scenario: The case of Acrolophus subgroup ( Centaurea L., Compositae) from the western Mediterranean</atitle><jtitle>Gene</jtitle><addtitle>Gene</addtitle><date>2007-12-01</date><risdate>2007</risdate><volume>404</volume><issue>1</issue><spage>80</spage><epage>92</epage><pages>80-92</pages><issn>0378-1119</issn><eissn>1879-0038</eissn><abstract>Within the genus
Centaurea (subtribe Centaureinae, tribe Cardueae, Compositae) hybridizations and reticulate-evolution phenomena have widely been recognized. This is especially true in the taxa included in the subgroup
Acrolophus from the western Mediterranean area, in which recurrent hybridizations of parapatric (“microallopatric”) lineages within the geographical range of a primary radiation have been suggested. The subgroup
Acrolophus includes taxa from three sections (i.e.
Acrolophus,
Phalolepis and
Willkommia), and, together with other subgroups, forms the named
Jacea group (one of the three main groups into which
Centaurea is divided). In this paper, we have studied the influence that the complex evolutionary scenario described for the
Acrolophus subgroup from the western Mediterranean exerts on the evolutionary pattern of a satellite-DNA family, the
HinfI family, which exists within the genomes of these taxa. To this end, we have analyzed the evolution of this satellite-DNA family in taxa from different taxonomic comparative levels: i) seven subspecies of the
C. boissieri complex (one of which with two varieties) of the sect.
Willkommia; ii) species of the sections
Willkommia (10 species, 19 taxa),
Acrolophus (two species), and
Phalolepis (two species), all in the
Acrolophus subgroup; iii) one external species to the
Jacea group,
C. granatensis from the group
Acrocentron; iv) and species from other related genera from the Centaureinae subtribe (
Phonus and
Carthamus, both belonging to the
Carthamus group). The influence of the suggested model for the origin and diversification of the
Acrolophus subgroup is evidenced by the existence of three different
HinfI satellite-DNA subfamilies coexisting in some genomes, and by the analysis that we have made by comparing site-by-site the transition stages in the process of concerted evolution between the sequences of the each subfamily. From this analysis, we can deduce that the
HinfI repeated subfamilies evolved in a gradual manner, and that the different stages of concerted evolution fit quite well with the combined nuclear–chloroplast-DNA-deduced divergences and phylogeny of the subtribe Centaureinae. The
HinfI satellite-DNA from the
Carthamus species group (genera
Carthamus and
Phonus) and from the
Acrocentron group (
Centaurea granatensis) shows a high intraspecific conservation of the repeats, suggesting that the mechanisms producing concerted evolution have been efficient in these taxa. In addition, the comparison of individual nucleotide positions between related species shows a paucity in the spreading of variants in each subfamily with satellite-DNA divergence, an indication of a constant rate of homogenization of the repeated cluster. On the contrary, this trend is absent in the comparisons of the
HinfI sequences from taxa of the subgroup
Acrolophus. In this subgroup, we have found in this repetitive family similar representative average sequences for each taxon analyzed, polymorphic sites in each taxon being scant, most of them autapomorphic, representing early stages of genetic differentiation between taxa in the process of concerted evolution. The absence of concerted evolution was visualized by similar levels of intraspecific variation and interspecific divergence and by the lack of fixed species-diagnostic nucleotide sites. These facts might reflect the reticulate mode of evolution of
Acrolophus.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>17905542</pmid><doi>10.1016/j.gene.2007.09.001</doi><tpages>13</tpages></addata></record> |
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source | MEDLINE; Elsevier ScienceDirect Journals Complete |
subjects | Acrolophus Asteraceae - classification Asteraceae - genetics Base Sequence Centaurea Centaurea - classification Centaurea - genetics Concerted evolution Deoxyribonucleases, Type II Site-Specific - chemistry DNA, Plant - chemistry DNA, Plant - genetics DNA, Satellite Evolution, Molecular Mediterranean Region Molecular Sequence Data Phylogeny Radiation Reticulate evolution Satellite-DNA Sequence Analysis, DNA Willkommia |
title | Satellite-DNA evolutionary patterns under a complex evolutionary scenario: The case of Acrolophus subgroup ( Centaurea L., Compositae) from the western Mediterranean |
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