Evaluation of a Cytolethal Distending Toxin (cdt) Gene-Based Species-Specific Multiplex PCR Assay for the Identification of Campylobacter Strains Isolated from Poultry in Thailand
We have recently developed a cytolethal distending toxin (cdt) gene‐based species‐specific multiplex PCR assay for identifying Campylobacter jejuni, C. coli and C. fetus. In the present study, the applicability of this assay was evaluated with 34 Campylobacter‐like organisms isolated from poultry in...
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Veröffentlicht in: | Microbiology and immunology 2007-09, Vol.51 (9), p.909-917 |
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creator | Samosornsuk, Worada Asakura, Masahiro Yoshida, Emi Taguchi, Takashi Nishimura, Kazuhiko Eampokalap, Boonchuay Phongsisay, Vongsavanh Chaicumpa, Wanpen Yamasaki, Shinji |
description | We have recently developed a cytolethal distending toxin (cdt) gene‐based species‐specific multiplex PCR assay for identifying Campylobacter jejuni, C. coli and C. fetus. In the present study, the applicability of this assay was evaluated with 34 Campylobacter‐like organisms isolated from poultry in Thailand for species identification and was compared with other assays including API Campy, 16S rRNA gene sequence, and hippuricase (hipO) gene detection. Of the 34 strains analyzed, 20, 10 and 1 were identified as C. jejuni, C. coli, and Arcobacter cryaerophilus, respectively, and 3 could not be identified by API Campy. However, 16S rRNA gene analysis, showed that all 34 strains are C. jejuni/coli. To discriminate between these 2 species, the hipO gene, which is specifically present in C. jejuni, was examined by PCR and was detected in 20 strains, which were identified as C. jejuni by API Campy but not in the remaining 14 strains. Collective results indicated that 20 strains were C. jejuni whereas the 14 strains were C. coli. When the cdt gene‐based multiplex PCR was employed, however, 19, 20 and 19 strains were identified as C. jejuni while 13, 14 and 13 were identified as C. coli by the cdtA, cdtB and cdtC gene‐based multiplex PCR, respectively. Pulsed‐field gel electrophoresis revealed that C. jejuni and C. coli strains analyzed are genetically diverse. Taken together, these data suggest that the cdt gene‐based multiplex PCR, particularly cdtB gene‐based multiplex PCR, is a simple, rapid and reliable method for identifying the species of Campylobacter strains. |
doi_str_mv | 10.1111/j.1348-0421.2007.tb03974.x |
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In the present study, the applicability of this assay was evaluated with 34 Campylobacter‐like organisms isolated from poultry in Thailand for species identification and was compared with other assays including API Campy, 16S rRNA gene sequence, and hippuricase (hipO) gene detection. Of the 34 strains analyzed, 20, 10 and 1 were identified as C. jejuni, C. coli, and Arcobacter cryaerophilus, respectively, and 3 could not be identified by API Campy. However, 16S rRNA gene analysis, showed that all 34 strains are C. jejuni/coli. To discriminate between these 2 species, the hipO gene, which is specifically present in C. jejuni, was examined by PCR and was detected in 20 strains, which were identified as C. jejuni by API Campy but not in the remaining 14 strains. Collective results indicated that 20 strains were C. jejuni whereas the 14 strains were C. coli. When the cdt gene‐based multiplex PCR was employed, however, 19, 20 and 19 strains were identified as C. jejuni while 13, 14 and 13 were identified as C. coli by the cdtA, cdtB and cdtC gene‐based multiplex PCR, respectively. Pulsed‐field gel electrophoresis revealed that C. jejuni and C. coli strains analyzed are genetically diverse. 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In the present study, the applicability of this assay was evaluated with 34 Campylobacter‐like organisms isolated from poultry in Thailand for species identification and was compared with other assays including API Campy, 16S rRNA gene sequence, and hippuricase (hipO) gene detection. Of the 34 strains analyzed, 20, 10 and 1 were identified as C. jejuni, C. coli, and Arcobacter cryaerophilus, respectively, and 3 could not be identified by API Campy. However, 16S rRNA gene analysis, showed that all 34 strains are C. jejuni/coli. To discriminate between these 2 species, the hipO gene, which is specifically present in C. jejuni, was examined by PCR and was detected in 20 strains, which were identified as C. jejuni by API Campy but not in the remaining 14 strains. Collective results indicated that 20 strains were C. jejuni whereas the 14 strains were C. coli. When the cdt gene‐based multiplex PCR was employed, however, 19, 20 and 19 strains were identified as C. jejuni while 13, 14 and 13 were identified as C. coli by the cdtA, cdtB and cdtC gene‐based multiplex PCR, respectively. Pulsed‐field gel electrophoresis revealed that C. jejuni and C. coli strains analyzed are genetically diverse. Taken together, these data suggest that the cdt gene‐based multiplex PCR, particularly cdtB gene‐based multiplex PCR, is a simple, rapid and reliable method for identifying the species of Campylobacter strains.</description><subject>Animals</subject><subject>API campy</subject><subject>Bacterial Toxins - genetics</subject><subject>Bacterial Toxins - isolation & purification</subject><subject>Bacterial Toxins - metabolism</subject><subject>Bacterial Typing Techniques - methods</subject><subject>campylobacter</subject><subject>Campylobacter - classification</subject><subject>Campylobacter - genetics</subject><subject>Campylobacter - isolation & purification</subject><subject>Campylobacter Infections - microbiology</subject><subject>Campylobacter Infections - veterinary</subject><subject>cytolethal distending toxin</subject><subject>DNA Primers</subject><subject>Electrophoresis, Gel, Pulsed-Field</subject><subject>Genes, Bacterial</subject><subject>Genetic Variation</subject><subject>multiplex PCR</subject><subject>Polymerase Chain Reaction - methods</subject><subject>Poultry</subject><subject>Poultry Diseases - microbiology</subject><subject>Thailand</subject><issn>0385-5600</issn><issn>1348-0421</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqVkcGO0zAQhiMEYsvCKyCLA4JDih3bTcKJJeyWoi1UbBF7s9xkTN1142I70DwXL4izrcoZX8ay__nG1pckLwgek7jebMaEsiLFLCPjDON8HFaYljkb7x8ko9PVw2SEacFTPsH4LHni_QbjLM8K9jg5I3lRxvNylPy5_CVNJ4O2LbIKSVT1wRoIa2nQB-0DtI1uf6Cl3esWvaqb8BpNoYX0vfTQoJsd1Bp8el-VrtG8M0HvDOzRovqKLryXPVLWobAGNGugDUPqNK2S211v7ErWARy6CU7q1qOZt0aGSFfObtHCRqTrURy_XEttZNs8TR4paTw8O9bz5NvV5bL6mF5_mc6qi-u05pyxNH5VcgIS18AIU5KuSk7jp8uaKyUbkpeUK0rYilJWKk45hiZGmqwuICtJQc-TlwfuztmfHfggttrXYOIbwHZeTIrYPcEsBt8egrWz3jtQYuf0VrpeECwGZWIjBi9i8CIGZeKoTOxj8_PjlG61heZf69FRDLw7BH5rA_1_oMV8Nr_fRkR6QAxG9yeEdHdiktOci--fp6K6mtzmC_ZJ3NK_o3S4YA</recordid><startdate>200709</startdate><enddate>200709</enddate><creator>Samosornsuk, Worada</creator><creator>Asakura, Masahiro</creator><creator>Yoshida, Emi</creator><creator>Taguchi, Takashi</creator><creator>Nishimura, Kazuhiko</creator><creator>Eampokalap, Boonchuay</creator><creator>Phongsisay, Vongsavanh</creator><creator>Chaicumpa, Wanpen</creator><creator>Yamasaki, Shinji</creator><general>Blackwell Publishing Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>200709</creationdate><title>Evaluation of a Cytolethal Distending Toxin (cdt) Gene-Based Species-Specific Multiplex PCR Assay for the Identification of Campylobacter Strains Isolated from Poultry in Thailand</title><author>Samosornsuk, Worada ; Asakura, Masahiro ; Yoshida, Emi ; Taguchi, Takashi ; Nishimura, Kazuhiko ; Eampokalap, Boonchuay ; Phongsisay, Vongsavanh ; Chaicumpa, Wanpen ; Yamasaki, Shinji</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5544-284a51ea0ce414fa3b9536099c5ffad17935f314b3349f5350edb95d2c8e29183</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Animals</topic><topic>API campy</topic><topic>Bacterial Toxins - genetics</topic><topic>Bacterial Toxins - isolation & purification</topic><topic>Bacterial Toxins - metabolism</topic><topic>Bacterial Typing Techniques - methods</topic><topic>campylobacter</topic><topic>Campylobacter - classification</topic><topic>Campylobacter - genetics</topic><topic>Campylobacter - isolation & purification</topic><topic>Campylobacter Infections - microbiology</topic><topic>Campylobacter Infections - veterinary</topic><topic>cytolethal distending toxin</topic><topic>DNA Primers</topic><topic>Electrophoresis, Gel, Pulsed-Field</topic><topic>Genes, Bacterial</topic><topic>Genetic Variation</topic><topic>multiplex PCR</topic><topic>Polymerase Chain Reaction - methods</topic><topic>Poultry</topic><topic>Poultry Diseases - microbiology</topic><topic>Thailand</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Samosornsuk, Worada</creatorcontrib><creatorcontrib>Asakura, Masahiro</creatorcontrib><creatorcontrib>Yoshida, Emi</creatorcontrib><creatorcontrib>Taguchi, Takashi</creatorcontrib><creatorcontrib>Nishimura, Kazuhiko</creatorcontrib><creatorcontrib>Eampokalap, Boonchuay</creatorcontrib><creatorcontrib>Phongsisay, Vongsavanh</creatorcontrib><creatorcontrib>Chaicumpa, Wanpen</creatorcontrib><creatorcontrib>Yamasaki, Shinji</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Microbiology and immunology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Samosornsuk, Worada</au><au>Asakura, Masahiro</au><au>Yoshida, Emi</au><au>Taguchi, Takashi</au><au>Nishimura, Kazuhiko</au><au>Eampokalap, Boonchuay</au><au>Phongsisay, Vongsavanh</au><au>Chaicumpa, Wanpen</au><au>Yamasaki, Shinji</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evaluation of a Cytolethal Distending Toxin (cdt) Gene-Based Species-Specific Multiplex PCR Assay for the Identification of Campylobacter Strains Isolated from Poultry in Thailand</atitle><jtitle>Microbiology and immunology</jtitle><addtitle>Microbiology and Immunology</addtitle><date>2007-09</date><risdate>2007</risdate><volume>51</volume><issue>9</issue><spage>909</spage><epage>917</epage><pages>909-917</pages><issn>0385-5600</issn><eissn>1348-0421</eissn><abstract>We have recently developed a cytolethal distending toxin (cdt) gene‐based species‐specific multiplex PCR assay for identifying Campylobacter jejuni, C. coli and C. fetus. In the present study, the applicability of this assay was evaluated with 34 Campylobacter‐like organisms isolated from poultry in Thailand for species identification and was compared with other assays including API Campy, 16S rRNA gene sequence, and hippuricase (hipO) gene detection. Of the 34 strains analyzed, 20, 10 and 1 were identified as C. jejuni, C. coli, and Arcobacter cryaerophilus, respectively, and 3 could not be identified by API Campy. However, 16S rRNA gene analysis, showed that all 34 strains are C. jejuni/coli. To discriminate between these 2 species, the hipO gene, which is specifically present in C. jejuni, was examined by PCR and was detected in 20 strains, which were identified as C. jejuni by API Campy but not in the remaining 14 strains. Collective results indicated that 20 strains were C. jejuni whereas the 14 strains were C. coli. When the cdt gene‐based multiplex PCR was employed, however, 19, 20 and 19 strains were identified as C. jejuni while 13, 14 and 13 were identified as C. coli by the cdtA, cdtB and cdtC gene‐based multiplex PCR, respectively. Pulsed‐field gel electrophoresis revealed that C. jejuni and C. coli strains analyzed are genetically diverse. Taken together, these data suggest that the cdt gene‐based multiplex PCR, particularly cdtB gene‐based multiplex PCR, is a simple, rapid and reliable method for identifying the species of Campylobacter strains.</abstract><cop>Australia</cop><pub>Blackwell Publishing Ltd</pub><pmid>17895609</pmid><doi>10.1111/j.1348-0421.2007.tb03974.x</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Animals API campy Bacterial Toxins - genetics Bacterial Toxins - isolation & purification Bacterial Toxins - metabolism Bacterial Typing Techniques - methods campylobacter Campylobacter - classification Campylobacter - genetics Campylobacter - isolation & purification Campylobacter Infections - microbiology Campylobacter Infections - veterinary cytolethal distending toxin DNA Primers Electrophoresis, Gel, Pulsed-Field Genes, Bacterial Genetic Variation multiplex PCR Polymerase Chain Reaction - methods Poultry Poultry Diseases - microbiology Thailand |
title | Evaluation of a Cytolethal Distending Toxin (cdt) Gene-Based Species-Specific Multiplex PCR Assay for the Identification of Campylobacter Strains Isolated from Poultry in Thailand |
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