Genome-wide scan identifies a susceptibility locus for familial primary cutaneous amyloidosis on chromosome 5p13.1-q11.2

Summary Background  Primary cutaneous amyloidosis (PCA) is a relatively common skin disorder in South America and Southeast Asia. Most cases of PCA are sporadic but familial aggregation has been reported from South America and Taiwan. The different susceptibility among ethnic groups suggests that ge...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:British journal of dermatology (1951) 2006-12, Vol.155 (6), p.1201-1208
Hauptverfasser: Lee, D-D., Lin, M-W., Chen, I-C., Huang, C-Y., Liu, M-T., Wang, C-R., Chang, Y-T., Liu, H-N., Liu, T-T., Wong, C-K., Tsai, S-F.
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 1208
container_issue 6
container_start_page 1201
container_title British journal of dermatology (1951)
container_volume 155
creator Lee, D-D.
Lin, M-W.
Chen, I-C.
Huang, C-Y.
Liu, M-T.
Wang, C-R.
Chang, Y-T.
Liu, H-N.
Liu, T-T.
Wong, C-K.
Tsai, S-F.
description Summary Background  Primary cutaneous amyloidosis (PCA) is a relatively common skin disorder in South America and Southeast Asia. Most cases of PCA are sporadic but familial aggregation has been reported from South America and Taiwan. The different susceptibility among ethnic groups suggests that genetic factors may play an important role in its pathogenesis. Objectives  We aimed to perform a genome‐wide scan by linkage analysis across 15 families with familial primary cutaneous amyloidosis (FPCA) to map the disease gene(s) for FPCA. Patients and methods  A total of 15 FPCA families including 50 individuals affected with PCA were recruited. Throughout the 22 autosomes, 369 polymorphic microsatellite markers were used initially. Regions showing a LOD score > 1 identified in the initial scan were further analysed with additional markers. Two‐point and multipoint linkage analysis were performed by using the LINKAGE program. Nonparametric linkage (NPL) analysis and reconstruction of haplotypes were performed with the GENEHUNTER program. Results  A maximum two‐point LOD score of 4·76 for the marker D5S1490 (θ = 0·10, α = 0·60) and a multipoint LOD score of 4·50 between D5S822 and D5S623 (α = 0·60) were obtained under the assumption of heterogeneity. A peak NPL score of 5·23 (P value = 0·000007) was found from D5S1490 to D5S2076. Further analysis focusing on two major families identifies a common haplotype shared by all affected individuals between D5S1490 and D5S623. To our knowledge, this is the first report of genome‐wide analysis of a large number of FPCA pedigrees. Conclusions  Our study provides evidence for significant linkage to chromosome 5p13.1‐q11.2 in a subset of FPCA families.
doi_str_mv 10.1111/j.1365-2133.2006.07524.x
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_proquest_miscellaneous_68152979</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>68152979</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4364-5d2f60da7ff44de8fc4a9ea553d67cb4f239d18669e39f0800490c7983eb62373</originalsourceid><addsrcrecordid>eNpFkc1u3CAUhVHVqpkmfYWKTbuzcwEDZtFFk7STpFGiSv1ZIgaDytQ2E2MrM29fnJkkbLjifAe49yCECZQkr9N1SZjgBSWMlRRAlCA5rcrtK7R4Fl6jBQDIApRgR-hdSmsAwoDDW3REJAHJFCzQdun62LniITQOJ2t6nIt-DD64hA1OU7JuM4ZVaMO4w220U8I-DtibLh-ZFm-G0Jlhh-00mt7FLJtu18bQxBQSjj22f4fYxZQfwXxDWEmKe0JKeoLeeNMm9_6wH6Nf377-PL8sbu6WV-dfbgpbMVEVvKFeQGOk91XVuNrbyihnOGeNkHZVecpUQ2ohlGPKQw1QKbBS1cytBGWSHaNP-3s3Q7yfXBp1F3JPbbv_rRY14VRJlcEPB3Bada7Rh8b006wy8PEAmDyo1g-mtyG9cHXFgBKeuc977iG0bveig56z02s9R6TniPScnX7MTm_12fXFXGV_sfeHNLrts98M_7SQTHL953apz35c8mv4_lvfsv_ff5u8</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>68152979</pqid></control><display><type>article</type><title>Genome-wide scan identifies a susceptibility locus for familial primary cutaneous amyloidosis on chromosome 5p13.1-q11.2</title><source>Oxford University Press Journals All Titles (1996-Current)</source><source>MEDLINE</source><source>Wiley Online Library Journals Frontfile Complete</source><creator>Lee, D-D. ; Lin, M-W. ; Chen, I-C. ; Huang, C-Y. ; Liu, M-T. ; Wang, C-R. ; Chang, Y-T. ; Liu, H-N. ; Liu, T-T. ; Wong, C-K. ; Tsai, S-F.</creator><creatorcontrib>Lee, D-D. ; Lin, M-W. ; Chen, I-C. ; Huang, C-Y. ; Liu, M-T. ; Wang, C-R. ; Chang, Y-T. ; Liu, H-N. ; Liu, T-T. ; Wong, C-K. ; Tsai, S-F.</creatorcontrib><description>Summary Background  Primary cutaneous amyloidosis (PCA) is a relatively common skin disorder in South America and Southeast Asia. Most cases of PCA are sporadic but familial aggregation has been reported from South America and Taiwan. The different susceptibility among ethnic groups suggests that genetic factors may play an important role in its pathogenesis. Objectives  We aimed to perform a genome‐wide scan by linkage analysis across 15 families with familial primary cutaneous amyloidosis (FPCA) to map the disease gene(s) for FPCA. Patients and methods  A total of 15 FPCA families including 50 individuals affected with PCA were recruited. Throughout the 22 autosomes, 369 polymorphic microsatellite markers were used initially. Regions showing a LOD score &gt; 1 identified in the initial scan were further analysed with additional markers. Two‐point and multipoint linkage analysis were performed by using the LINKAGE program. Nonparametric linkage (NPL) analysis and reconstruction of haplotypes were performed with the GENEHUNTER program. Results  A maximum two‐point LOD score of 4·76 for the marker D5S1490 (θ = 0·10, α = 0·60) and a multipoint LOD score of 4·50 between D5S822 and D5S623 (α = 0·60) were obtained under the assumption of heterogeneity. A peak NPL score of 5·23 (P value = 0·000007) was found from D5S1490 to D5S2076. Further analysis focusing on two major families identifies a common haplotype shared by all affected individuals between D5S1490 and D5S623. To our knowledge, this is the first report of genome‐wide analysis of a large number of FPCA pedigrees. Conclusions  Our study provides evidence for significant linkage to chromosome 5p13.1‐q11.2 in a subset of FPCA families.</description><identifier>ISSN: 0007-0963</identifier><identifier>EISSN: 1365-2133</identifier><identifier>DOI: 10.1111/j.1365-2133.2006.07524.x</identifier><identifier>PMID: 17107390</identifier><identifier>CODEN: BJDEAZ</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>Adolescent ; Adult ; Amyloidosis ; Amyloidosis - genetics ; Asian Continental Ancestry Group - genetics ; Biological and medical sciences ; Child ; Chromosomes, Human, Pair 5 - genetics ; Dermatology ; familial primary cutaneous amyloidosis ; Family ; Female ; Genetic Linkage ; Genetic Markers ; Genetic Predisposition to Disease ; Genotype ; Humans ; LOD score ; Male ; Medical sciences ; Metabolic diseases ; Microsatellite Repeats ; Middle Aged ; Other metabolic disorders ; Pedigree ; Skin Diseases - genetics</subject><ispartof>British journal of dermatology (1951), 2006-12, Vol.155 (6), p.1201-1208</ispartof><rights>2007 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4364-5d2f60da7ff44de8fc4a9ea553d67cb4f239d18669e39f0800490c7983eb62373</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1365-2133.2006.07524.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1365-2133.2006.07524.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=18430215$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17107390$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lee, D-D.</creatorcontrib><creatorcontrib>Lin, M-W.</creatorcontrib><creatorcontrib>Chen, I-C.</creatorcontrib><creatorcontrib>Huang, C-Y.</creatorcontrib><creatorcontrib>Liu, M-T.</creatorcontrib><creatorcontrib>Wang, C-R.</creatorcontrib><creatorcontrib>Chang, Y-T.</creatorcontrib><creatorcontrib>Liu, H-N.</creatorcontrib><creatorcontrib>Liu, T-T.</creatorcontrib><creatorcontrib>Wong, C-K.</creatorcontrib><creatorcontrib>Tsai, S-F.</creatorcontrib><title>Genome-wide scan identifies a susceptibility locus for familial primary cutaneous amyloidosis on chromosome 5p13.1-q11.2</title><title>British journal of dermatology (1951)</title><addtitle>Br J Dermatol</addtitle><description>Summary Background  Primary cutaneous amyloidosis (PCA) is a relatively common skin disorder in South America and Southeast Asia. Most cases of PCA are sporadic but familial aggregation has been reported from South America and Taiwan. The different susceptibility among ethnic groups suggests that genetic factors may play an important role in its pathogenesis. Objectives  We aimed to perform a genome‐wide scan by linkage analysis across 15 families with familial primary cutaneous amyloidosis (FPCA) to map the disease gene(s) for FPCA. Patients and methods  A total of 15 FPCA families including 50 individuals affected with PCA were recruited. Throughout the 22 autosomes, 369 polymorphic microsatellite markers were used initially. Regions showing a LOD score &gt; 1 identified in the initial scan were further analysed with additional markers. Two‐point and multipoint linkage analysis were performed by using the LINKAGE program. Nonparametric linkage (NPL) analysis and reconstruction of haplotypes were performed with the GENEHUNTER program. Results  A maximum two‐point LOD score of 4·76 for the marker D5S1490 (θ = 0·10, α = 0·60) and a multipoint LOD score of 4·50 between D5S822 and D5S623 (α = 0·60) were obtained under the assumption of heterogeneity. A peak NPL score of 5·23 (P value = 0·000007) was found from D5S1490 to D5S2076. Further analysis focusing on two major families identifies a common haplotype shared by all affected individuals between D5S1490 and D5S623. To our knowledge, this is the first report of genome‐wide analysis of a large number of FPCA pedigrees. Conclusions  Our study provides evidence for significant linkage to chromosome 5p13.1‐q11.2 in a subset of FPCA families.</description><subject>Adolescent</subject><subject>Adult</subject><subject>Amyloidosis</subject><subject>Amyloidosis - genetics</subject><subject>Asian Continental Ancestry Group - genetics</subject><subject>Biological and medical sciences</subject><subject>Child</subject><subject>Chromosomes, Human, Pair 5 - genetics</subject><subject>Dermatology</subject><subject>familial primary cutaneous amyloidosis</subject><subject>Family</subject><subject>Female</subject><subject>Genetic Linkage</subject><subject>Genetic Markers</subject><subject>Genetic Predisposition to Disease</subject><subject>Genotype</subject><subject>Humans</subject><subject>LOD score</subject><subject>Male</subject><subject>Medical sciences</subject><subject>Metabolic diseases</subject><subject>Microsatellite Repeats</subject><subject>Middle Aged</subject><subject>Other metabolic disorders</subject><subject>Pedigree</subject><subject>Skin Diseases - genetics</subject><issn>0007-0963</issn><issn>1365-2133</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkc1u3CAUhVHVqpkmfYWKTbuzcwEDZtFFk7STpFGiSv1ZIgaDytQ2E2MrM29fnJkkbLjifAe49yCECZQkr9N1SZjgBSWMlRRAlCA5rcrtK7R4Fl6jBQDIApRgR-hdSmsAwoDDW3REJAHJFCzQdun62LniITQOJ2t6nIt-DD64hA1OU7JuM4ZVaMO4w220U8I-DtibLh-ZFm-G0Jlhh-00mt7FLJtu18bQxBQSjj22f4fYxZQfwXxDWEmKe0JKeoLeeNMm9_6wH6Nf377-PL8sbu6WV-dfbgpbMVEVvKFeQGOk91XVuNrbyihnOGeNkHZVecpUQ2ohlGPKQw1QKbBS1cytBGWSHaNP-3s3Q7yfXBp1F3JPbbv_rRY14VRJlcEPB3Bada7Rh8b006wy8PEAmDyo1g-mtyG9cHXFgBKeuc977iG0bveig56z02s9R6TniPScnX7MTm_12fXFXGV_sfeHNLrts98M_7SQTHL953apz35c8mv4_lvfsv_ff5u8</recordid><startdate>200612</startdate><enddate>200612</enddate><creator>Lee, D-D.</creator><creator>Lin, M-W.</creator><creator>Chen, I-C.</creator><creator>Huang, C-Y.</creator><creator>Liu, M-T.</creator><creator>Wang, C-R.</creator><creator>Chang, Y-T.</creator><creator>Liu, H-N.</creator><creator>Liu, T-T.</creator><creator>Wong, C-K.</creator><creator>Tsai, S-F.</creator><general>Blackwell Publishing Ltd</general><general>Blackwell</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope></search><sort><creationdate>200612</creationdate><title>Genome-wide scan identifies a susceptibility locus for familial primary cutaneous amyloidosis on chromosome 5p13.1-q11.2</title><author>Lee, D-D. ; Lin, M-W. ; Chen, I-C. ; Huang, C-Y. ; Liu, M-T. ; Wang, C-R. ; Chang, Y-T. ; Liu, H-N. ; Liu, T-T. ; Wong, C-K. ; Tsai, S-F.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4364-5d2f60da7ff44de8fc4a9ea553d67cb4f239d18669e39f0800490c7983eb62373</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Adolescent</topic><topic>Adult</topic><topic>Amyloidosis</topic><topic>Amyloidosis - genetics</topic><topic>Asian Continental Ancestry Group - genetics</topic><topic>Biological and medical sciences</topic><topic>Child</topic><topic>Chromosomes, Human, Pair 5 - genetics</topic><topic>Dermatology</topic><topic>familial primary cutaneous amyloidosis</topic><topic>Family</topic><topic>Female</topic><topic>Genetic Linkage</topic><topic>Genetic Markers</topic><topic>Genetic Predisposition to Disease</topic><topic>Genotype</topic><topic>Humans</topic><topic>LOD score</topic><topic>Male</topic><topic>Medical sciences</topic><topic>Metabolic diseases</topic><topic>Microsatellite Repeats</topic><topic>Middle Aged</topic><topic>Other metabolic disorders</topic><topic>Pedigree</topic><topic>Skin Diseases - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lee, D-D.</creatorcontrib><creatorcontrib>Lin, M-W.</creatorcontrib><creatorcontrib>Chen, I-C.</creatorcontrib><creatorcontrib>Huang, C-Y.</creatorcontrib><creatorcontrib>Liu, M-T.</creatorcontrib><creatorcontrib>Wang, C-R.</creatorcontrib><creatorcontrib>Chang, Y-T.</creatorcontrib><creatorcontrib>Liu, H-N.</creatorcontrib><creatorcontrib>Liu, T-T.</creatorcontrib><creatorcontrib>Wong, C-K.</creatorcontrib><creatorcontrib>Tsai, S-F.</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><jtitle>British journal of dermatology (1951)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lee, D-D.</au><au>Lin, M-W.</au><au>Chen, I-C.</au><au>Huang, C-Y.</au><au>Liu, M-T.</au><au>Wang, C-R.</au><au>Chang, Y-T.</au><au>Liu, H-N.</au><au>Liu, T-T.</au><au>Wong, C-K.</au><au>Tsai, S-F.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide scan identifies a susceptibility locus for familial primary cutaneous amyloidosis on chromosome 5p13.1-q11.2</atitle><jtitle>British journal of dermatology (1951)</jtitle><addtitle>Br J Dermatol</addtitle><date>2006-12</date><risdate>2006</risdate><volume>155</volume><issue>6</issue><spage>1201</spage><epage>1208</epage><pages>1201-1208</pages><issn>0007-0963</issn><eissn>1365-2133</eissn><coden>BJDEAZ</coden><abstract>Summary Background  Primary cutaneous amyloidosis (PCA) is a relatively common skin disorder in South America and Southeast Asia. Most cases of PCA are sporadic but familial aggregation has been reported from South America and Taiwan. The different susceptibility among ethnic groups suggests that genetic factors may play an important role in its pathogenesis. Objectives  We aimed to perform a genome‐wide scan by linkage analysis across 15 families with familial primary cutaneous amyloidosis (FPCA) to map the disease gene(s) for FPCA. Patients and methods  A total of 15 FPCA families including 50 individuals affected with PCA were recruited. Throughout the 22 autosomes, 369 polymorphic microsatellite markers were used initially. Regions showing a LOD score &gt; 1 identified in the initial scan were further analysed with additional markers. Two‐point and multipoint linkage analysis were performed by using the LINKAGE program. Nonparametric linkage (NPL) analysis and reconstruction of haplotypes were performed with the GENEHUNTER program. Results  A maximum two‐point LOD score of 4·76 for the marker D5S1490 (θ = 0·10, α = 0·60) and a multipoint LOD score of 4·50 between D5S822 and D5S623 (α = 0·60) were obtained under the assumption of heterogeneity. A peak NPL score of 5·23 (P value = 0·000007) was found from D5S1490 to D5S2076. Further analysis focusing on two major families identifies a common haplotype shared by all affected individuals between D5S1490 and D5S623. To our knowledge, this is the first report of genome‐wide analysis of a large number of FPCA pedigrees. Conclusions  Our study provides evidence for significant linkage to chromosome 5p13.1‐q11.2 in a subset of FPCA families.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>17107390</pmid><doi>10.1111/j.1365-2133.2006.07524.x</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0007-0963
ispartof British journal of dermatology (1951), 2006-12, Vol.155 (6), p.1201-1208
issn 0007-0963
1365-2133
language eng
recordid cdi_proquest_miscellaneous_68152979
source Oxford University Press Journals All Titles (1996-Current); MEDLINE; Wiley Online Library Journals Frontfile Complete
subjects Adolescent
Adult
Amyloidosis
Amyloidosis - genetics
Asian Continental Ancestry Group - genetics
Biological and medical sciences
Child
Chromosomes, Human, Pair 5 - genetics
Dermatology
familial primary cutaneous amyloidosis
Family
Female
Genetic Linkage
Genetic Markers
Genetic Predisposition to Disease
Genotype
Humans
LOD score
Male
Medical sciences
Metabolic diseases
Microsatellite Repeats
Middle Aged
Other metabolic disorders
Pedigree
Skin Diseases - genetics
title Genome-wide scan identifies a susceptibility locus for familial primary cutaneous amyloidosis on chromosome 5p13.1-q11.2
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-09T10%3A05%3A24IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genome-wide%20scan%20identifies%20a%20susceptibility%20locus%20for%20familial%20primary%20cutaneous%20amyloidosis%20on%20chromosome%205p13.1-q11.2&rft.jtitle=British%20journal%20of%20dermatology%20(1951)&rft.au=Lee,%20D-D.&rft.date=2006-12&rft.volume=155&rft.issue=6&rft.spage=1201&rft.epage=1208&rft.pages=1201-1208&rft.issn=0007-0963&rft.eissn=1365-2133&rft.coden=BJDEAZ&rft_id=info:doi/10.1111/j.1365-2133.2006.07524.x&rft_dat=%3Cproquest_pubme%3E68152979%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=68152979&rft_id=info:pmid/17107390&rfr_iscdi=true