Metabasin Approach for Computing the Master Equation Dynamics of Systems with Broken Ergodicity

We propose a technique for computing the master equation dynamics of systems with broken ergodicity. The technique involves a partitioning of the system into components, or metabasins, where the relaxation times within a metabasin are short compared to an observation time scale. In this manner, equi...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory Molecules, spectroscopy, kinetics, environment, & general theory, 2007-08, Vol.111 (32), p.7957-7965
Hauptverfasser: Mauro, John C, Loucks, Roger J, Gupta, Prabhat K
Format: Artikel
Sprache:eng
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 7965
container_issue 32
container_start_page 7957
container_title The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory
container_volume 111
creator Mauro, John C
Loucks, Roger J
Gupta, Prabhat K
description We propose a technique for computing the master equation dynamics of systems with broken ergodicity. The technique involves a partitioning of the system into components, or metabasins, where the relaxation times within a metabasin are short compared to an observation time scale. In this manner, equilibrium statistical mechanics is assumed within each metabasin, and the intermetabasin dynamics are computed using a reduced set of master equations. The number of metabasins depends upon both the temperature of the system and its derivative with respect to time. With this technique, the integration time step of the master equations is governed by the observation time scale rather than the fastest transition time between basins. We illustrate the technique using a simple model landscape with seven basins and show validation against direct Euler integration. Finally, we demonstrate the use of the technique for a realistic glass-forming system (viz., selenium) where direct Euler integration is not computationally feasible.
doi_str_mv 10.1021/jp0731194
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_68147108</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>68147108</sourcerecordid><originalsourceid>FETCH-LOGICAL-a351t-463e5bdfe20c8df94f37ae884db35fe327653cda5a4dffbc4ad79d8299bad8273</originalsourceid><addsrcrecordid>eNptkM1uEzEUha2qqC0ti74A8qZILAbssT0eL9sQfqSEIpKuLY9_GqeZ8dT2CPL2GCUqG1bnSvfTubofANcYfcCoxh-3I-IEY0FPwAVmNapYjdlpmVErKtYQcQ5ep7RFCGFS0zNwjnlDhWibCyCXNqtOJT_A23GMQekNdCHCWejHKfvhEeaNhUuVso1w_jyp7MMAP-0H1XudYHBwtS-7PsFfPm_gXQxPdoDz-BiM1z7vr8Arp3bJvjnmJXj4PF_PvlaL-y_fZreLShGGc0UbYllnnK2Rbo0T1BGubNtS0xHmLKl5w4g2iilqnOs0VYYL09ZCdKoEJ5fg3aG3_PA82ZRl75O2u50abJiSbFpMefFRwPcHUMeQUrROjtH3Ku4lRvKvTflis7Bvj6VT11vzjzzqK0B1AHxx8Ptlr-KTbDjhTK5_rOQSNT_XC76S3wt_c-CVTnIbpjgUJ_85_AfQC4vs</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>68147108</pqid></control><display><type>article</type><title>Metabasin Approach for Computing the Master Equation Dynamics of Systems with Broken Ergodicity</title><source>American Chemical Society Journals</source><creator>Mauro, John C ; Loucks, Roger J ; Gupta, Prabhat K</creator><creatorcontrib>Mauro, John C ; Loucks, Roger J ; Gupta, Prabhat K</creatorcontrib><description>We propose a technique for computing the master equation dynamics of systems with broken ergodicity. The technique involves a partitioning of the system into components, or metabasins, where the relaxation times within a metabasin are short compared to an observation time scale. In this manner, equilibrium statistical mechanics is assumed within each metabasin, and the intermetabasin dynamics are computed using a reduced set of master equations. The number of metabasins depends upon both the temperature of the system and its derivative with respect to time. With this technique, the integration time step of the master equations is governed by the observation time scale rather than the fastest transition time between basins. We illustrate the technique using a simple model landscape with seven basins and show validation against direct Euler integration. Finally, we demonstrate the use of the technique for a realistic glass-forming system (viz., selenium) where direct Euler integration is not computationally feasible.</description><identifier>ISSN: 1089-5639</identifier><identifier>EISSN: 1520-5215</identifier><identifier>DOI: 10.1021/jp0731194</identifier><identifier>PMID: 17649986</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><ispartof>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, &amp; general theory, 2007-08, Vol.111 (32), p.7957-7965</ispartof><rights>Copyright © 2007 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a351t-463e5bdfe20c8df94f37ae884db35fe327653cda5a4dffbc4ad79d8299bad8273</citedby><cites>FETCH-LOGICAL-a351t-463e5bdfe20c8df94f37ae884db35fe327653cda5a4dffbc4ad79d8299bad8273</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/jp0731194$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/jp0731194$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,776,780,2751,27055,27903,27904,56716,56766</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17649986$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mauro, John C</creatorcontrib><creatorcontrib>Loucks, Roger J</creatorcontrib><creatorcontrib>Gupta, Prabhat K</creatorcontrib><title>Metabasin Approach for Computing the Master Equation Dynamics of Systems with Broken Ergodicity</title><title>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, &amp; general theory</title><addtitle>J. Phys. Chem. A</addtitle><description>We propose a technique for computing the master equation dynamics of systems with broken ergodicity. The technique involves a partitioning of the system into components, or metabasins, where the relaxation times within a metabasin are short compared to an observation time scale. In this manner, equilibrium statistical mechanics is assumed within each metabasin, and the intermetabasin dynamics are computed using a reduced set of master equations. The number of metabasins depends upon both the temperature of the system and its derivative with respect to time. With this technique, the integration time step of the master equations is governed by the observation time scale rather than the fastest transition time between basins. We illustrate the technique using a simple model landscape with seven basins and show validation against direct Euler integration. Finally, we demonstrate the use of the technique for a realistic glass-forming system (viz., selenium) where direct Euler integration is not computationally feasible.</description><issn>1089-5639</issn><issn>1520-5215</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><recordid>eNptkM1uEzEUha2qqC0ti74A8qZILAbssT0eL9sQfqSEIpKuLY9_GqeZ8dT2CPL2GCUqG1bnSvfTubofANcYfcCoxh-3I-IEY0FPwAVmNapYjdlpmVErKtYQcQ5ep7RFCGFS0zNwjnlDhWibCyCXNqtOJT_A23GMQekNdCHCWejHKfvhEeaNhUuVso1w_jyp7MMAP-0H1XudYHBwtS-7PsFfPm_gXQxPdoDz-BiM1z7vr8Arp3bJvjnmJXj4PF_PvlaL-y_fZreLShGGc0UbYllnnK2Rbo0T1BGubNtS0xHmLKl5w4g2iilqnOs0VYYL09ZCdKoEJ5fg3aG3_PA82ZRl75O2u50abJiSbFpMefFRwPcHUMeQUrROjtH3Ku4lRvKvTflis7Bvj6VT11vzjzzqK0B1AHxx8Ptlr-KTbDjhTK5_rOQSNT_XC76S3wt_c-CVTnIbpjgUJ_85_AfQC4vs</recordid><startdate>20070816</startdate><enddate>20070816</enddate><creator>Mauro, John C</creator><creator>Loucks, Roger J</creator><creator>Gupta, Prabhat K</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20070816</creationdate><title>Metabasin Approach for Computing the Master Equation Dynamics of Systems with Broken Ergodicity</title><author>Mauro, John C ; Loucks, Roger J ; Gupta, Prabhat K</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a351t-463e5bdfe20c8df94f37ae884db35fe327653cda5a4dffbc4ad79d8299bad8273</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Mauro, John C</creatorcontrib><creatorcontrib>Loucks, Roger J</creatorcontrib><creatorcontrib>Gupta, Prabhat K</creatorcontrib><collection>Istex</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, &amp; general theory</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mauro, John C</au><au>Loucks, Roger J</au><au>Gupta, Prabhat K</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Metabasin Approach for Computing the Master Equation Dynamics of Systems with Broken Ergodicity</atitle><jtitle>The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, &amp; general theory</jtitle><addtitle>J. Phys. Chem. A</addtitle><date>2007-08-16</date><risdate>2007</risdate><volume>111</volume><issue>32</issue><spage>7957</spage><epage>7965</epage><pages>7957-7965</pages><issn>1089-5639</issn><eissn>1520-5215</eissn><abstract>We propose a technique for computing the master equation dynamics of systems with broken ergodicity. The technique involves a partitioning of the system into components, or metabasins, where the relaxation times within a metabasin are short compared to an observation time scale. In this manner, equilibrium statistical mechanics is assumed within each metabasin, and the intermetabasin dynamics are computed using a reduced set of master equations. The number of metabasins depends upon both the temperature of the system and its derivative with respect to time. With this technique, the integration time step of the master equations is governed by the observation time scale rather than the fastest transition time between basins. We illustrate the technique using a simple model landscape with seven basins and show validation against direct Euler integration. Finally, we demonstrate the use of the technique for a realistic glass-forming system (viz., selenium) where direct Euler integration is not computationally feasible.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>17649986</pmid><doi>10.1021/jp0731194</doi><tpages>9</tpages></addata></record>
fulltext fulltext
identifier ISSN: 1089-5639
ispartof The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 2007-08, Vol.111 (32), p.7957-7965
issn 1089-5639
1520-5215
language eng
recordid cdi_proquest_miscellaneous_68147108
source American Chemical Society Journals
title Metabasin Approach for Computing the Master Equation Dynamics of Systems with Broken Ergodicity
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-26T07%3A27%3A23IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Metabasin%20Approach%20for%20Computing%20the%20Master%20Equation%20Dynamics%20of%20Systems%20with%20Broken%20Ergodicity&rft.jtitle=The%20journal%20of%20physical%20chemistry.%20A,%20Molecules,%20spectroscopy,%20kinetics,%20environment,%20&%20general%20theory&rft.au=Mauro,%20John%20C&rft.date=2007-08-16&rft.volume=111&rft.issue=32&rft.spage=7957&rft.epage=7965&rft.pages=7957-7965&rft.issn=1089-5639&rft.eissn=1520-5215&rft_id=info:doi/10.1021/jp0731194&rft_dat=%3Cproquest_cross%3E68147108%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=68147108&rft_id=info:pmid/17649986&rfr_iscdi=true