In Silico Engineering of Tailored Ink-Binding Ability at Molecular Printboards

Molecular recognition between guest ink molecules and β‐cyclodextrin (β‐CD) cavities at self‐assembled monolayers provides a molecular printboard for nanopatterning applications. We recently used molecular dynamics (MD) simulations to describe the specificity of ink–printboard binding and here extend the simulations to include charged cyclodextrin hosts, necessary to broaden the chemistry of molecular printboards and bind charged inks such as the ferrocenium cation. Shifting to high pH, or alternatively grafting a charged sidearm onto β‐CD, created three distinct types of anionic β‐CD cavity and we used electronic structure calculations and MD simulations to measure host–guest charge transfer and binding strengths. We find that steric recognition of uncharged organic molecules is retained at the charged printboards, and that improved guest–host electrostatic contacts can strengthen binding of larger inks while penalising small inks, enhancing the level of discrimination. A prudent choice of complementary host–guest shape and charge states thus provides a means of tuning both ink binding strength and specificity at molecular printboards. Molecular recognition: Dynamic simulation of printboard interactions shows how charge and steric interactions can help discriminate between ink molecules of different sizes, with potential applications to nanopatterning at self‐assembled monolayers.