first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula
We report the first gene-based linkage map of Lupinus angustifolius (narrow-leafed lupin) and its comparison to the partially sequenced genome of Medicago truncatula. The map comprises 382 loci in 20 major linkage groups, two triplets, three pairs and 11 unlinked loci and is 1,846 cM in length. The...
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| Veröffentlicht in: | Theoretical and applied genetics 2006-07, Vol.113 (2), p.225-238 |
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| creator | Nelson, M.N Phan, H.T.T Ellwood, S.R Moolhuijzen, P.M Hane, J Williams, A O'Lone, C.E Fosu-Nyarko, J Scobie, M Cakir, M |
| description | We report the first gene-based linkage map of Lupinus angustifolius (narrow-leafed lupin) and its comparison to the partially sequenced genome of Medicago truncatula. The map comprises 382 loci in 20 major linkage groups, two triplets, three pairs and 11 unlinked loci and is 1,846 cM in length. The map was generated from the segregation of 163 RFLP markers, 135 gene-based PCR markers, 75 AFLP and 4 AFLP-derived SCAR markers in a mapping population of 93 recombinant inbred lines, derived from a cross between domesticated and wild-type parents. This enabled the mapping of five major genes controlling key domestication traits in L. angustifolius. Using marker sequence data, the L. angustifolius genetic map was compared to the partially completed M. truncatula genome sequence. We found evidence of conserved synteny in some regions of the genome despite the wide evolutionary distance between these legume species. We also found new evidence of widespread duplication within the L. angustifolius genome. |
| doi_str_mv | 10.1007/s00122-006-0288-0 |
| format | Article |
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The map comprises 382 loci in 20 major linkage groups, two triplets, three pairs and 11 unlinked loci and is 1,846 cM in length. The map was generated from the segregation of 163 RFLP markers, 135 gene-based PCR markers, 75 AFLP and 4 AFLP-derived SCAR markers in a mapping population of 93 recombinant inbred lines, derived from a cross between domesticated and wild-type parents. This enabled the mapping of five major genes controlling key domestication traits in L. angustifolius. Using marker sequence data, the L. angustifolius genetic map was compared to the partially completed M. truncatula genome sequence. We found evidence of conserved synteny in some regions of the genome despite the wide evolutionary distance between these legume species. We also found new evidence of widespread duplication within the L. angustifolius genome.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-006-0288-0</identifier><identifier>PMID: 16791689</identifier><identifier>CODEN: THAGA6</identifier><language>eng</language><publisher>Heidelberg: Springer</publisher><subject>Alleles ; amplified fragment length polymorphism ; Biological and medical sciences ; chromosome mapping ; Classical genetics, quantitative genetics, hybrids ; conserved synteny ; domestication ; Fundamental and applied biological sciences. Psychology ; Gene Frequency ; Genes ; Genes, Plant ; Genetic Linkage ; Genetic Markers ; Genetics ; Genetics of eukaryotes. Biological and molecular evolution ; Genomics ; linkage groups ; loci ; Lupinus - genetics ; Lupinus angustifolius ; major genes ; Medicago - genetics ; Medicago truncatula ; microsatellite repeats ; Polymerase Chain Reaction ; Pteridophyta, spermatophyta ; quantitative traits ; restriction fragment length polymorphism ; sequence characterized amplified region ; Vegetals</subject><ispartof>Theoretical and applied genetics, 2006-07, Vol.113 (2), p.225-238</ispartof><rights>2006 INIST-CNRS</rights><rights>Springer-Verlag 2006</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c411t-a389087762c1f61077f01f3a7bb36aebd8530d07ef92e9c4e784b81663eccb033</citedby><cites>FETCH-LOGICAL-c411t-a389087762c1f61077f01f3a7bb36aebd8530d07ef92e9c4e784b81663eccb033</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=17906333$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16791689$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nelson, M.N</creatorcontrib><creatorcontrib>Phan, H.T.T</creatorcontrib><creatorcontrib>Ellwood, S.R</creatorcontrib><creatorcontrib>Moolhuijzen, P.M</creatorcontrib><creatorcontrib>Hane, J</creatorcontrib><creatorcontrib>Williams, A</creatorcontrib><creatorcontrib>O'Lone, C.E</creatorcontrib><creatorcontrib>Fosu-Nyarko, J</creatorcontrib><creatorcontrib>Scobie, M</creatorcontrib><creatorcontrib>Cakir, M</creatorcontrib><title>first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><description>We report the first gene-based linkage map of Lupinus angustifolius (narrow-leafed lupin) and its comparison to the partially sequenced genome of Medicago truncatula. The map comprises 382 loci in 20 major linkage groups, two triplets, three pairs and 11 unlinked loci and is 1,846 cM in length. The map was generated from the segregation of 163 RFLP markers, 135 gene-based PCR markers, 75 AFLP and 4 AFLP-derived SCAR markers in a mapping population of 93 recombinant inbred lines, derived from a cross between domesticated and wild-type parents. This enabled the mapping of five major genes controlling key domestication traits in L. angustifolius. Using marker sequence data, the L. angustifolius genetic map was compared to the partially completed M. truncatula genome sequence. We found evidence of conserved synteny in some regions of the genome despite the wide evolutionary distance between these legume species. We also found new evidence of widespread duplication within the L. angustifolius genome.</description><subject>Alleles</subject><subject>amplified fragment length polymorphism</subject><subject>Biological and medical sciences</subject><subject>chromosome mapping</subject><subject>Classical genetics, quantitative genetics, hybrids</subject><subject>conserved synteny</subject><subject>domestication</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene Frequency</subject><subject>Genes</subject><subject>Genes, Plant</subject><subject>Genetic Linkage</subject><subject>Genetic Markers</subject><subject>Genetics</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>Genomics</subject><subject>linkage groups</subject><subject>loci</subject><subject>Lupinus - genetics</subject><subject>Lupinus angustifolius</subject><subject>major genes</subject><subject>Medicago - genetics</subject><subject>Medicago truncatula</subject><subject>microsatellite repeats</subject><subject>Polymerase Chain Reaction</subject><subject>Pteridophyta, spermatophyta</subject><subject>quantitative traits</subject><subject>restriction fragment length polymorphism</subject><subject>sequence characterized amplified region</subject><subject>Vegetals</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqFkU2v1CAUhonReMfRH-BGGxPdcT1Ay8fS3PiVjHGhd00ohbE3LYxQNLPyr0szTW7ixhUBnvcNhweh5wSuCYB4mwEIpRiAY6BSYniAdqRlFFPa0odoB9AC7kRHr9CTnO8AgHbAHqMrwoUiXKod-uPHlJfm6ILDvcluaGZzaqJvDuU0hpIbE44lL6OP01h3h2s8RWuWMYYVGuLs6uV2sJasgaGxMWSXftW2fA6LC-fm97j8aL64obLH2CyphBoqk3mKHnkzZfdsW_fo9sP77zef8OHrx8837w7YtoQs2DCpQArBqSWeExDCA_HMiL5n3Lh-kB2DAYTzijplWydk20vCOXPW9sDYHr259J5S_Fnqo_U8ZuumyQQXS9ZcEpAdVf8FiWIV61bw1T_gXSwp1CG0pKCogqpij8gFsinmnJzXpzTOJp01Ab061BeHujrUq0MNNfNiKy797Ib7xCatAq83wGRrJp9MsGO-54QCztg688sL503U5pgqc_uNAmGwzqrql_0FykauNg</recordid><startdate>20060701</startdate><enddate>20060701</enddate><creator>Nelson, M.N</creator><creator>Phan, H.T.T</creator><creator>Ellwood, S.R</creator><creator>Moolhuijzen, P.M</creator><creator>Hane, J</creator><creator>Williams, A</creator><creator>O'Lone, C.E</creator><creator>Fosu-Nyarko, J</creator><creator>Scobie, M</creator><creator>Cakir, M</creator><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PHGZM</scope><scope>PHGZT</scope><scope>PJZUB</scope><scope>PKEHL</scope><scope>PPXIY</scope><scope>PQEST</scope><scope>PQGLB</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20060701</creationdate><title>first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula</title><author>Nelson, M.N ; Phan, H.T.T ; Ellwood, S.R ; Moolhuijzen, P.M ; Hane, J ; Williams, A ; O'Lone, C.E ; Fosu-Nyarko, J ; Scobie, M ; Cakir, M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c411t-a389087762c1f61077f01f3a7bb36aebd8530d07ef92e9c4e784b81663eccb033</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Alleles</topic><topic>amplified fragment length polymorphism</topic><topic>Biological and medical sciences</topic><topic>chromosome mapping</topic><topic>Classical genetics, quantitative genetics, hybrids</topic><topic>conserved synteny</topic><topic>domestication</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene Frequency</topic><topic>Genes</topic><topic>Genes, Plant</topic><topic>Genetic Linkage</topic><topic>Genetic Markers</topic><topic>Genetics</topic><topic>Genetics of eukaryotes. Biological and molecular evolution</topic><topic>Genomics</topic><topic>linkage groups</topic><topic>loci</topic><topic>Lupinus - genetics</topic><topic>Lupinus angustifolius</topic><topic>major genes</topic><topic>Medicago - genetics</topic><topic>Medicago truncatula</topic><topic>microsatellite repeats</topic><topic>Polymerase Chain Reaction</topic><topic>Pteridophyta, spermatophyta</topic><topic>quantitative traits</topic><topic>restriction fragment length polymorphism</topic><topic>sequence characterized amplified region</topic><topic>Vegetals</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nelson, M.N</creatorcontrib><creatorcontrib>Phan, H.T.T</creatorcontrib><creatorcontrib>Ellwood, S.R</creatorcontrib><creatorcontrib>Moolhuijzen, P.M</creatorcontrib><creatorcontrib>Hane, J</creatorcontrib><creatorcontrib>Williams, A</creatorcontrib><creatorcontrib>O'Lone, C.E</creatorcontrib><creatorcontrib>Fosu-Nyarko, J</creatorcontrib><creatorcontrib>Scobie, M</creatorcontrib><creatorcontrib>Cakir, M</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest Central (New)</collection><collection>ProQuest One Academic (New)</collection><collection>ProQuest Health & Medical Research Collection</collection><collection>ProQuest One Academic Middle East (New)</collection><collection>ProQuest One Health & Nursing</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Applied & Life Sciences</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Theoretical and applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nelson, M.N</au><au>Phan, H.T.T</au><au>Ellwood, S.R</au><au>Moolhuijzen, P.M</au><au>Hane, J</au><au>Williams, A</au><au>O'Lone, C.E</au><au>Fosu-Nyarko, J</au><au>Scobie, M</au><au>Cakir, M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula</atitle><jtitle>Theoretical and applied genetics</jtitle><addtitle>Theor Appl Genet</addtitle><date>2006-07-01</date><risdate>2006</risdate><volume>113</volume><issue>2</issue><spage>225</spage><epage>238</epage><pages>225-238</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><coden>THAGA6</coden><abstract>We report the first gene-based linkage map of Lupinus angustifolius (narrow-leafed lupin) and its comparison to the partially sequenced genome of Medicago truncatula. The map comprises 382 loci in 20 major linkage groups, two triplets, three pairs and 11 unlinked loci and is 1,846 cM in length. The map was generated from the segregation of 163 RFLP markers, 135 gene-based PCR markers, 75 AFLP and 4 AFLP-derived SCAR markers in a mapping population of 93 recombinant inbred lines, derived from a cross between domesticated and wild-type parents. This enabled the mapping of five major genes controlling key domestication traits in L. angustifolius. Using marker sequence data, the L. angustifolius genetic map was compared to the partially completed M. truncatula genome sequence. We found evidence of conserved synteny in some regions of the genome despite the wide evolutionary distance between these legume species. We also found new evidence of widespread duplication within the L. angustifolius genome.</abstract><cop>Heidelberg</cop><cop>Berlin</cop><pub>Springer</pub><pmid>16791689</pmid><doi>10.1007/s00122-006-0288-0</doi><tpages>14</tpages></addata></record> |
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| subjects | Alleles amplified fragment length polymorphism Biological and medical sciences chromosome mapping Classical genetics, quantitative genetics, hybrids conserved synteny domestication Fundamental and applied biological sciences. Psychology Gene Frequency Genes Genes, Plant Genetic Linkage Genetic Markers Genetics Genetics of eukaryotes. Biological and molecular evolution Genomics linkage groups loci Lupinus - genetics Lupinus angustifolius major genes Medicago - genetics Medicago truncatula microsatellite repeats Polymerase Chain Reaction Pteridophyta, spermatophyta quantitative traits restriction fragment length polymorphism sequence characterized amplified region Vegetals |
| title | first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula |
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