Chryseobacterium piscium sp. nov., isolated from fish of the South Atlantic Ocean off South Africa
1 School for Agriculture and Environmental Science, Central University of Technology: Free State, 1 President Brandt Street, Bloemfontein 9300, South Africa 2 Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa 3 Department of Biotech...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2006-06, Vol.56 (6), p.1317-1322 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | de Beer, Hanli Hugo, Celia J Jooste, Piet J Vancanneyt, Marc Coenye, Tom Vandamme, Peter |
| description | 1 School for Agriculture and Environmental Science, Central University of Technology: Free State, 1 President Brandt Street, Bloemfontein 9300, South Africa
2 Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa
3 Department of Biotechnology and Food Technology, Tshwane University of Technology, Pretoria, South Africa
4 BCCM/LMG Bacteria Collection, Ghent University, K. L. Ledeganckstraat 35, Ghent B-9000, Belgium
5 Laboratorium of Microbiology, Ghent University, K. L. Ledeganckstraat 35, Ghent B-9000, Belgium
Correspondence Hanli de Beer hdebeer{at}cut.ac.za
Four isolates from freshly caught fish samples obtained from the South Atlantic Ocean off the South African coastline were shown to represent a novel species in the genus Chryseobacterium by means of a polyphasic taxonomic study. The four isolates had virtually identical whole-cell protein profiles, fatty acid profiles and biochemical properties. Analysis of the 16S rRNA sequence of strain LMG 23089 T revealed 99.3 and 98.9 % similarity to the 16S rRNA sequences of the type strains of Chryseobacterium balustinum and Chryseobacterium scophthalmum , respectively. Strain LMG 23089 T and the C. balustinum and C. scophthalmum type strains formed a stable lineage supported by a bootstrap value of 100 %. The levels of DNADNA hybridization towards these nearest phylogenetic neighbours were below 57 %. The absence of growth on MacConkey agar or at 37 °C (on nutrient agar), the capacity to grow in the presence of 5 % NaCl and the production of urease activity differentiate this novel taxon from C. balustinum and C. scophthalmum . The four isolates are formally classified as Chryseobacterium piscium sp. nov., with strain LMG 23089 T (=CCUG 51923 T ) as the type strain. Its DNA G+C content is 33.6 mol%.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Chryseobacterium piscium LMG 23089 T is AM040439 . |
| doi_str_mv | 10.1099/ijs.0.64014-0 |
| format | Article |
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2 Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa
3 Department of Biotechnology and Food Technology, Tshwane University of Technology, Pretoria, South Africa
4 BCCM/LMG Bacteria Collection, Ghent University, K. L. Ledeganckstraat 35, Ghent B-9000, Belgium
5 Laboratorium of Microbiology, Ghent University, K. L. Ledeganckstraat 35, Ghent B-9000, Belgium
Correspondence Hanli de Beer hdebeer{at}cut.ac.za
Four isolates from freshly caught fish samples obtained from the South Atlantic Ocean off the South African coastline were shown to represent a novel species in the genus Chryseobacterium by means of a polyphasic taxonomic study. The four isolates had virtually identical whole-cell protein profiles, fatty acid profiles and biochemical properties. Analysis of the 16S rRNA sequence of strain LMG 23089 T revealed 99.3 and 98.9 % similarity to the 16S rRNA sequences of the type strains of Chryseobacterium balustinum and Chryseobacterium scophthalmum , respectively. Strain LMG 23089 T and the C. balustinum and C. scophthalmum type strains formed a stable lineage supported by a bootstrap value of 100 %. The levels of DNADNA hybridization towards these nearest phylogenetic neighbours were below 57 %. The absence of growth on MacConkey agar or at 37 °C (on nutrient agar), the capacity to grow in the presence of 5 % NaCl and the production of urease activity differentiate this novel taxon from C. balustinum and C. scophthalmum . The four isolates are formally classified as Chryseobacterium piscium sp. nov., with strain LMG 23089 T (=CCUG 51923 T ) as the type strain. Its DNA G+C content is 33.6 mol%.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Chryseobacterium piscium LMG 23089 T is AM040439 .</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.64014-0</identifier><identifier>PMID: 16738109</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Animals ; Atlantic Ocean ; Bacteriology ; Biological and medical sciences ; Chryseobacterium ; Chryseobacterium - classification ; Chryseobacterium - genetics ; Chryseobacterium - growth & development ; Chryseobacterium - isolation & purification ; Chryseobacterium piscium ; Culture Media ; DNA, Bacterial - genetics ; Fishes - microbiology ; Fundamental and applied biological sciences. Psychology ; Marine ; Microbiology ; Molecular Sequence Data ; Nucleic Acid Hybridization ; Phylogeny ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; South Africa ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2006-06, Vol.56 (6), p.1317-1322</ispartof><rights>2006 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c424t-39275e27cd7e47316f23ed1673608147d1b184a729fd1312c244e0d51bc051df3</citedby><cites>FETCH-LOGICAL-c424t-39275e27cd7e47316f23ed1673608147d1b184a729fd1312c244e0d51bc051df3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,3747,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=17860180$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16738109$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>de Beer, Hanli</creatorcontrib><creatorcontrib>Hugo, Celia J</creatorcontrib><creatorcontrib>Jooste, Piet J</creatorcontrib><creatorcontrib>Vancanneyt, Marc</creatorcontrib><creatorcontrib>Coenye, Tom</creatorcontrib><creatorcontrib>Vandamme, Peter</creatorcontrib><title>Chryseobacterium piscium sp. nov., isolated from fish of the South Atlantic Ocean off South Africa</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 School for Agriculture and Environmental Science, Central University of Technology: Free State, 1 President Brandt Street, Bloemfontein 9300, South Africa
2 Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa
3 Department of Biotechnology and Food Technology, Tshwane University of Technology, Pretoria, South Africa
4 BCCM/LMG Bacteria Collection, Ghent University, K. L. Ledeganckstraat 35, Ghent B-9000, Belgium
5 Laboratorium of Microbiology, Ghent University, K. L. Ledeganckstraat 35, Ghent B-9000, Belgium
Correspondence Hanli de Beer hdebeer{at}cut.ac.za
Four isolates from freshly caught fish samples obtained from the South Atlantic Ocean off the South African coastline were shown to represent a novel species in the genus Chryseobacterium by means of a polyphasic taxonomic study. The four isolates had virtually identical whole-cell protein profiles, fatty acid profiles and biochemical properties. Analysis of the 16S rRNA sequence of strain LMG 23089 T revealed 99.3 and 98.9 % similarity to the 16S rRNA sequences of the type strains of Chryseobacterium balustinum and Chryseobacterium scophthalmum , respectively. Strain LMG 23089 T and the C. balustinum and C. scophthalmum type strains formed a stable lineage supported by a bootstrap value of 100 %. The levels of DNADNA hybridization towards these nearest phylogenetic neighbours were below 57 %. The absence of growth on MacConkey agar or at 37 °C (on nutrient agar), the capacity to grow in the presence of 5 % NaCl and the production of urease activity differentiate this novel taxon from C. balustinum and C. scophthalmum . The four isolates are formally classified as Chryseobacterium piscium sp. nov., with strain LMG 23089 T (=CCUG 51923 T ) as the type strain. Its DNA G+C content is 33.6 mol%.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Chryseobacterium piscium LMG 23089 T is AM040439 .</description><subject>Animals</subject><subject>Atlantic Ocean</subject><subject>Bacteriology</subject><subject>Biological and medical sciences</subject><subject>Chryseobacterium</subject><subject>Chryseobacterium - classification</subject><subject>Chryseobacterium - genetics</subject><subject>Chryseobacterium - growth & development</subject><subject>Chryseobacterium - isolation & purification</subject><subject>Chryseobacterium piscium</subject><subject>Culture Media</subject><subject>DNA, Bacterial - genetics</subject><subject>Fishes - microbiology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Marine</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Nucleic Acid Hybridization</subject><subject>Phylogeny</subject><subject>RNA, Bacterial - genetics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>South Africa</subject><subject>Systematics</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkDFv1TAURi0EoqUwsiIvVB1IuHYcOxmrpxaQKnUAZstxrhtXSfywE1D_fR3eg46drqV7_PnzIeQ9g5JB237296mEUgpgooAX5JQJKYsaKvHy_5nLE_ImpXvIjAR4TU6YVFWTr5-SbjfEh4ShM3bB6NeJ7n2y20z7ks7hd_mJ-hRGs2BPXQwTdT4NNDi6DEi_h3UZ6OUymnnxlt5aNHPeuX8LF701b8krZ8aE747zjPy8vvqx-1rc3H75tru8KazgYimqlqsaubK9QqEqJh2vsN-aSmiYUD3rWCOM4q3rWcW45UIg9DXrLNSsd9UZOT_k7mP4tWJa9JS_gmMuh2FNWjbAm5apZ0EOQrZSQgaLA2hjSCmi0_voJxMfNAO92dfZvgb9177e-A_H4LWbsH-ij7oz8PEImGTN6KKZrU9PnGoksGYLujhwg78b_viI-g7nyecanQ_bo7XUUmcLqnoE2peZyA</recordid><startdate>20060601</startdate><enddate>20060601</enddate><creator>de Beer, Hanli</creator><creator>Hugo, Celia J</creator><creator>Jooste, Piet J</creator><creator>Vancanneyt, Marc</creator><creator>Coenye, Tom</creator><creator>Vandamme, Peter</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20060601</creationdate><title>Chryseobacterium piscium sp. nov., isolated from fish of the South Atlantic Ocean off South Africa</title><author>de Beer, Hanli ; Hugo, Celia J ; Jooste, Piet J ; Vancanneyt, Marc ; Coenye, Tom ; Vandamme, Peter</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c424t-39275e27cd7e47316f23ed1673608147d1b184a729fd1312c244e0d51bc051df3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Animals</topic><topic>Atlantic Ocean</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>Chryseobacterium</topic><topic>Chryseobacterium - classification</topic><topic>Chryseobacterium - genetics</topic><topic>Chryseobacterium - growth & development</topic><topic>Chryseobacterium - isolation & purification</topic><topic>Chryseobacterium piscium</topic><topic>Culture Media</topic><topic>DNA, Bacterial - genetics</topic><topic>Fishes - microbiology</topic><topic>Fundamental and applied biological sciences. 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2 Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa
3 Department of Biotechnology and Food Technology, Tshwane University of Technology, Pretoria, South Africa
4 BCCM/LMG Bacteria Collection, Ghent University, K. L. Ledeganckstraat 35, Ghent B-9000, Belgium
5 Laboratorium of Microbiology, Ghent University, K. L. Ledeganckstraat 35, Ghent B-9000, Belgium
Correspondence Hanli de Beer hdebeer{at}cut.ac.za
Four isolates from freshly caught fish samples obtained from the South Atlantic Ocean off the South African coastline were shown to represent a novel species in the genus Chryseobacterium by means of a polyphasic taxonomic study. The four isolates had virtually identical whole-cell protein profiles, fatty acid profiles and biochemical properties. Analysis of the 16S rRNA sequence of strain LMG 23089 T revealed 99.3 and 98.9 % similarity to the 16S rRNA sequences of the type strains of Chryseobacterium balustinum and Chryseobacterium scophthalmum , respectively. Strain LMG 23089 T and the C. balustinum and C. scophthalmum type strains formed a stable lineage supported by a bootstrap value of 100 %. The levels of DNADNA hybridization towards these nearest phylogenetic neighbours were below 57 %. The absence of growth on MacConkey agar or at 37 °C (on nutrient agar), the capacity to grow in the presence of 5 % NaCl and the production of urease activity differentiate this novel taxon from C. balustinum and C. scophthalmum . The four isolates are formally classified as Chryseobacterium piscium sp. nov., with strain LMG 23089 T (=CCUG 51923 T ) as the type strain. Its DNA G+C content is 33.6 mol%.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Chryseobacterium piscium LMG 23089 T is AM040439 .</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>16738109</pmid><doi>10.1099/ijs.0.64014-0</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Animals Atlantic Ocean Bacteriology Biological and medical sciences Chryseobacterium Chryseobacterium - classification Chryseobacterium - genetics Chryseobacterium - growth & development Chryseobacterium - isolation & purification Chryseobacterium piscium Culture Media DNA, Bacterial - genetics Fishes - microbiology Fundamental and applied biological sciences. Psychology Marine Microbiology Molecular Sequence Data Nucleic Acid Hybridization Phylogeny RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics South Africa Systematics |
| title | Chryseobacterium piscium sp. nov., isolated from fish of the South Atlantic Ocean off South Africa |
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