Culturable marine actinomycete diversity from tropical Pacific Ocean sediments
Summary Actinomycetes were cultivated using a variety of media and selective isolation techniques from 275 marine samples collected around the island of Guam. In total, 6425 actinomycete colonies were observed and 983 (15%) of these, representing the range of morphological diversity observed from ea...
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creator | Jensen, Paul R. Gontang, Erin Mafnas, Chrisy Mincer, Tracy J. Fenical, William |
description | Summary
Actinomycetes were cultivated using a variety of media and selective isolation techniques from 275 marine samples collected around the island of Guam. In total, 6425 actinomycete colonies were observed and 983 (15%) of these, representing the range of morphological diversity observed from each sample, were obtained in pure culture. The majority of the strains isolated (58%) required seawater for growth indicating a high degree of marine adaptation. The dominant actinomycete recovered (568 strains) belonged to the seawater‐requiring marine taxon ‘Salinospora’, a new genus within the family Micromonosporaceae. A formal description of this taxon has been accepted for publication (Maldonado et al., 2005) and includes a revision of the generic epithet to Salinispora gen. nov. Members of two major new clades related to Streptomyces spp., tentatively called MAR2 and MAR3, were cultivated and appear to represent new genera within the Streptomycetaceae. In total, five new marine phylotypes, including two within the Thermomonosporaceae that appear to represent new taxa, were obtained in culture. These results support the existence of taxonomically diverse populations of phylogenetically distinct actinomycetes residing in the marine environment. These bacteria can be readily cultured using low nutrient media and represent an unexplored resource for pharmaceutical drug discovery. |
doi_str_mv | 10.1111/j.1462-2920.2005.00785.x |
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Actinomycetes were cultivated using a variety of media and selective isolation techniques from 275 marine samples collected around the island of Guam. In total, 6425 actinomycete colonies were observed and 983 (15%) of these, representing the range of morphological diversity observed from each sample, were obtained in pure culture. The majority of the strains isolated (58%) required seawater for growth indicating a high degree of marine adaptation. The dominant actinomycete recovered (568 strains) belonged to the seawater‐requiring marine taxon ‘Salinospora’, a new genus within the family Micromonosporaceae. A formal description of this taxon has been accepted for publication (Maldonado et al., 2005) and includes a revision of the generic epithet to Salinispora gen. nov. Members of two major new clades related to Streptomyces spp., tentatively called MAR2 and MAR3, were cultivated and appear to represent new genera within the Streptomycetaceae. In total, five new marine phylotypes, including two within the Thermomonosporaceae that appear to represent new taxa, were obtained in culture. These results support the existence of taxonomically diverse populations of phylogenetically distinct actinomycetes residing in the marine environment. These bacteria can be readily cultured using low nutrient media and represent an unexplored resource for pharmaceutical drug discovery.</description><identifier>ISSN: 1462-2912</identifier><identifier>EISSN: 1462-2920</identifier><identifier>DOI: 10.1111/j.1462-2920.2005.00785.x</identifier><identifier>PMID: 15946301</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Science Ltd</publisher><subject><![CDATA[Actinomycetales - classification ; Actinomycetales - genetics ; Actinomycetales - growth & development ; Actinomycetales - isolation & purification ; Actinomycetes ; Bacteriological Techniques ; Culture Media ; Geologic Sediments - microbiology ; Micromonosporaceae ; Micromonosporaceae - classification ; Micromonosporaceae - genetics ; Micromonosporaceae - growth & development ; Micromonosporaceae - isolation & purification ; Molecular Sequence Data ; Pacific Ocean ; Phylogeny ; Salinispora ; Seawater - microbiology ; Sequence Analysis, DNA ; Streptomyces ; Streptomycetaceae - classification ; Streptomycetaceae - genetics ; Streptomycetaceae - growth & development ; Streptomycetaceae - isolation & purification ; Tropical Climate]]></subject><ispartof>Environmental microbiology, 2005-07, Vol.7 (7), p.1039-1048</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5515-c7c75c9bb52815b68e7421d6c2f23b644dbff98a6855a0e79643db0ca38104f63</citedby><cites>FETCH-LOGICAL-c5515-c7c75c9bb52815b68e7421d6c2f23b644dbff98a6855a0e79643db0ca38104f63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1462-2920.2005.00785.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1462-2920.2005.00785.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15946301$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jensen, Paul R.</creatorcontrib><creatorcontrib>Gontang, Erin</creatorcontrib><creatorcontrib>Mafnas, Chrisy</creatorcontrib><creatorcontrib>Mincer, Tracy J.</creatorcontrib><creatorcontrib>Fenical, William</creatorcontrib><title>Culturable marine actinomycete diversity from tropical Pacific Ocean sediments</title><title>Environmental microbiology</title><addtitle>Environ Microbiol</addtitle><description>Summary
Actinomycetes were cultivated using a variety of media and selective isolation techniques from 275 marine samples collected around the island of Guam. In total, 6425 actinomycete colonies were observed and 983 (15%) of these, representing the range of morphological diversity observed from each sample, were obtained in pure culture. The majority of the strains isolated (58%) required seawater for growth indicating a high degree of marine adaptation. The dominant actinomycete recovered (568 strains) belonged to the seawater‐requiring marine taxon ‘Salinospora’, a new genus within the family Micromonosporaceae. A formal description of this taxon has been accepted for publication (Maldonado et al., 2005) and includes a revision of the generic epithet to Salinispora gen. nov. Members of two major new clades related to Streptomyces spp., tentatively called MAR2 and MAR3, were cultivated and appear to represent new genera within the Streptomycetaceae. In total, five new marine phylotypes, including two within the Thermomonosporaceae that appear to represent new taxa, were obtained in culture. These results support the existence of taxonomically diverse populations of phylogenetically distinct actinomycetes residing in the marine environment. These bacteria can be readily cultured using low nutrient media and represent an unexplored resource for pharmaceutical drug discovery.</description><subject>Actinomycetales - classification</subject><subject>Actinomycetales - genetics</subject><subject>Actinomycetales - growth & development</subject><subject>Actinomycetales - isolation & purification</subject><subject>Actinomycetes</subject><subject>Bacteriological Techniques</subject><subject>Culture Media</subject><subject>Geologic Sediments - microbiology</subject><subject>Micromonosporaceae</subject><subject>Micromonosporaceae - classification</subject><subject>Micromonosporaceae - genetics</subject><subject>Micromonosporaceae - growth & development</subject><subject>Micromonosporaceae - isolation & purification</subject><subject>Molecular Sequence Data</subject><subject>Pacific Ocean</subject><subject>Phylogeny</subject><subject>Salinispora</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><subject>Streptomyces</subject><subject>Streptomycetaceae - classification</subject><subject>Streptomycetaceae - genetics</subject><subject>Streptomycetaceae - growth & development</subject><subject>Streptomycetaceae - isolation & purification</subject><subject>Tropical Climate</subject><issn>1462-2912</issn><issn>1462-2920</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkElP8zAQhi0EYv8LyCduCV7iJRIXqNgkKBxAHC3HmUguWYqdfF_770lpVY4wlxnJzzsjPwhhSlI61sUspZlkCcsZSRkhIiVEaZEudtDh9mF3O1N2gI5inBFCFVdkHx1QkWeSE3qIppOh7odgixpwY4NvAVvX-7Zrlg56wKX_ByH6fomr0DW4D93cO1vjF-t85R1-dmBbHKH0DbR9PEF7la0jnG76MXq7vXmd3CePz3cPk6vHxAlBReKUU8LlRSGYpqKQGlTGaCkdqxgvZJaVRVXl2kothCWgcpnxsiDOck1JVkl-jM7Xe-eh-xwg9qbx0UFd2xa6IRqpcqpyQn4FqRI050yPoF6DLnQxBqjMPPjRyNJQYlbSzcysfJqVW7OSbr6lm8UYPdvcGIoGyp_gxvIIXK6B_76G5Z8Xm5unh3EY48k67mMPi23cho_xn1wJ8z69M1xeq1c9nZqMfwG2VJ7o</recordid><startdate>200507</startdate><enddate>200507</enddate><creator>Jensen, Paul R.</creator><creator>Gontang, Erin</creator><creator>Mafnas, Chrisy</creator><creator>Mincer, Tracy J.</creator><creator>Fenical, William</creator><general>Blackwell Science Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>200507</creationdate><title>Culturable marine actinomycete diversity from tropical Pacific Ocean sediments</title><author>Jensen, Paul R. ; Gontang, Erin ; Mafnas, Chrisy ; Mincer, Tracy J. ; Fenical, William</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5515-c7c75c9bb52815b68e7421d6c2f23b644dbff98a6855a0e79643db0ca38104f63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Actinomycetales - classification</topic><topic>Actinomycetales - genetics</topic><topic>Actinomycetales - growth & development</topic><topic>Actinomycetales - isolation & purification</topic><topic>Actinomycetes</topic><topic>Bacteriological Techniques</topic><topic>Culture Media</topic><topic>Geologic Sediments - microbiology</topic><topic>Micromonosporaceae</topic><topic>Micromonosporaceae - classification</topic><topic>Micromonosporaceae - genetics</topic><topic>Micromonosporaceae - growth & development</topic><topic>Micromonosporaceae - isolation & purification</topic><topic>Molecular Sequence Data</topic><topic>Pacific Ocean</topic><topic>Phylogeny</topic><topic>Salinispora</topic><topic>Seawater - microbiology</topic><topic>Sequence Analysis, DNA</topic><topic>Streptomyces</topic><topic>Streptomycetaceae - classification</topic><topic>Streptomycetaceae - genetics</topic><topic>Streptomycetaceae - growth & development</topic><topic>Streptomycetaceae - isolation & purification</topic><topic>Tropical Climate</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jensen, Paul R.</creatorcontrib><creatorcontrib>Gontang, Erin</creatorcontrib><creatorcontrib>Mafnas, Chrisy</creatorcontrib><creatorcontrib>Mincer, Tracy J.</creatorcontrib><creatorcontrib>Fenical, William</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Environmental microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jensen, Paul R.</au><au>Gontang, Erin</au><au>Mafnas, Chrisy</au><au>Mincer, Tracy J.</au><au>Fenical, William</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Culturable marine actinomycete diversity from tropical Pacific Ocean sediments</atitle><jtitle>Environmental microbiology</jtitle><addtitle>Environ Microbiol</addtitle><date>2005-07</date><risdate>2005</risdate><volume>7</volume><issue>7</issue><spage>1039</spage><epage>1048</epage><pages>1039-1048</pages><issn>1462-2912</issn><eissn>1462-2920</eissn><abstract>Summary
Actinomycetes were cultivated using a variety of media and selective isolation techniques from 275 marine samples collected around the island of Guam. In total, 6425 actinomycete colonies were observed and 983 (15%) of these, representing the range of morphological diversity observed from each sample, were obtained in pure culture. The majority of the strains isolated (58%) required seawater for growth indicating a high degree of marine adaptation. The dominant actinomycete recovered (568 strains) belonged to the seawater‐requiring marine taxon ‘Salinospora’, a new genus within the family Micromonosporaceae. A formal description of this taxon has been accepted for publication (Maldonado et al., 2005) and includes a revision of the generic epithet to Salinispora gen. nov. Members of two major new clades related to Streptomyces spp., tentatively called MAR2 and MAR3, were cultivated and appear to represent new genera within the Streptomycetaceae. In total, five new marine phylotypes, including two within the Thermomonosporaceae that appear to represent new taxa, were obtained in culture. These results support the existence of taxonomically diverse populations of phylogenetically distinct actinomycetes residing in the marine environment. These bacteria can be readily cultured using low nutrient media and represent an unexplored resource for pharmaceutical drug discovery.</abstract><cop>Oxford, UK</cop><pub>Blackwell Science Ltd</pub><pmid>15946301</pmid><doi>10.1111/j.1462-2920.2005.00785.x</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Actinomycetales - classification Actinomycetales - genetics Actinomycetales - growth & development Actinomycetales - isolation & purification Actinomycetes Bacteriological Techniques Culture Media Geologic Sediments - microbiology Micromonosporaceae Micromonosporaceae - classification Micromonosporaceae - genetics Micromonosporaceae - growth & development Micromonosporaceae - isolation & purification Molecular Sequence Data Pacific Ocean Phylogeny Salinispora Seawater - microbiology Sequence Analysis, DNA Streptomyces Streptomycetaceae - classification Streptomycetaceae - genetics Streptomycetaceae - growth & development Streptomycetaceae - isolation & purification Tropical Climate |
title | Culturable marine actinomycete diversity from tropical Pacific Ocean sediments |
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