Mechanism of Thio Acid/Azide Amidation
A combined experimental and computational mechanistic study of amide formation from thio acids and azides is described. The data support two distinct mechanistic pathways dependent on the electronic character of the azide component. Relatively electron-rich azides undergo bimolecular coupling with t...
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Veröffentlicht in: | Journal of the American Chemical Society 2006-05, Vol.128 (17), p.5695-5702 |
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creator | Kolakowski, Robert V Shangguan, Ning Sauers, Ronald R Williams, Lawrence J |
description | A combined experimental and computational mechanistic study of amide formation from thio acids and azides is described. The data support two distinct mechanistic pathways dependent on the electronic character of the azide component. Relatively electron-rich azides undergo bimolecular coupling with thiocarboxylates via an anion-accelerated [3+2] cycloaddition to give a thiatriazoline. Highly electron-poor azides couple via bimolecular union of the terminal nitrogen of the azide with sulfur of the thiocarboxylate to give a linear adduct. Cyclization of this intermediate gives a thiatriazoline. Decomposition to amide is found to proceed via retro-[3+2] cycloaddition of the neutral thiatriazoline intermediates. Computational analysis (DFT, 6-31+G(d)) identified pathways by which both classes of azide undergo [3+2] cycloaddition with thio acid to give thiatriazoline intermediates, although these paths are higher in energy than the thiocarboxylate amidations. These studies also establish that the reaction profile of electron-poor azides is attributable to a prior capture mechanism followed by intramolecular acylation. |
doi_str_mv | 10.1021/ja057533y |
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The data support two distinct mechanistic pathways dependent on the electronic character of the azide component. Relatively electron-rich azides undergo bimolecular coupling with thiocarboxylates via an anion-accelerated [3+2] cycloaddition to give a thiatriazoline. Highly electron-poor azides couple via bimolecular union of the terminal nitrogen of the azide with sulfur of the thiocarboxylate to give a linear adduct. Cyclization of this intermediate gives a thiatriazoline. Decomposition to amide is found to proceed via retro-[3+2] cycloaddition of the neutral thiatriazoline intermediates. Computational analysis (DFT, 6-31+G(d)) identified pathways by which both classes of azide undergo [3+2] cycloaddition with thio acid to give thiatriazoline intermediates, although these paths are higher in energy than the thiocarboxylate amidations. These studies also establish that the reaction profile of electron-poor azides is attributable to a prior capture mechanism followed by intramolecular acylation.</description><identifier>ISSN: 0002-7863</identifier><identifier>EISSN: 1520-5126</identifier><identifier>DOI: 10.1021/ja057533y</identifier><identifier>PMID: 16637636</identifier><identifier>CODEN: JACSAT</identifier><language>eng</language><publisher>Washington, DC: American Chemical Society</publisher><subject>Acids - chemistry ; Amides - chemistry ; Azides - chemistry ; Chemistry ; Cyclization ; Exact sciences and technology ; Kinetics and mechanisms ; Organic chemistry ; Reactivity and mechanisms</subject><ispartof>Journal of the American Chemical Society, 2006-05, Vol.128 (17), p.5695-5702</ispartof><rights>Copyright © 2006 American Chemical Society</rights><rights>2006 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a381t-171366dad3c5a7d7db202efce48b439bed0297fab1d2d787e1f96765173c228f3</citedby><cites>FETCH-LOGICAL-a381t-171366dad3c5a7d7db202efce48b439bed0297fab1d2d787e1f96765173c228f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/ja057533y$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/ja057533y$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,780,784,2765,27076,27924,27925,56738,56788</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=17741543$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16637636$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kolakowski, Robert V</creatorcontrib><creatorcontrib>Shangguan, Ning</creatorcontrib><creatorcontrib>Sauers, Ronald R</creatorcontrib><creatorcontrib>Williams, Lawrence J</creatorcontrib><title>Mechanism of Thio Acid/Azide Amidation</title><title>Journal of the American Chemical Society</title><addtitle>J. Am. Chem. Soc</addtitle><description>A combined experimental and computational mechanistic study of amide formation from thio acids and azides is described. The data support two distinct mechanistic pathways dependent on the electronic character of the azide component. Relatively electron-rich azides undergo bimolecular coupling with thiocarboxylates via an anion-accelerated [3+2] cycloaddition to give a thiatriazoline. Highly electron-poor azides couple via bimolecular union of the terminal nitrogen of the azide with sulfur of the thiocarboxylate to give a linear adduct. Cyclization of this intermediate gives a thiatriazoline. Decomposition to amide is found to proceed via retro-[3+2] cycloaddition of the neutral thiatriazoline intermediates. Computational analysis (DFT, 6-31+G(d)) identified pathways by which both classes of azide undergo [3+2] cycloaddition with thio acid to give thiatriazoline intermediates, although these paths are higher in energy than the thiocarboxylate amidations. These studies also establish that the reaction profile of electron-poor azides is attributable to a prior capture mechanism followed by intramolecular acylation.</description><subject>Acids - chemistry</subject><subject>Amides - chemistry</subject><subject>Azides - chemistry</subject><subject>Chemistry</subject><subject>Cyclization</subject><subject>Exact sciences and technology</subject><subject>Kinetics and mechanisms</subject><subject>Organic chemistry</subject><subject>Reactivity and mechanisms</subject><issn>0002-7863</issn><issn>1520-5126</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpt0F1LwzAUBuAgipvTC_-A9MaBF3X5aJL2sg51wtSJ09uQJilm9mMmLTh_vZWV7carw-E8vBxeAM4RvEYQo8lKQsopIZsDMEQUw5AizA7BEEKIQx4zMgAn3q-6NcIxOgYDxBjhjLAhGD8a9SEr68ugzoPlh62DVFk9SX-sNkFaWi0bW1en4CiXhTdn_RyBt7vb5XQWzp_vH6bpPJQkRk2IOCKMaamJopJrrjMMscmVieIsIklmNMQJz2WGNNY85gblCeOMIk4UxnFORmC8zV27-qs1vhGl9coUhaxM3XrBeAJJnLAOXm2hcrX3zuRi7Wwp3UYgKP5KEbtSOnvRh7ZZafRe9i104LIH0itZ5E5Wyvq94zxCNCKdC7fO-sZ87-7SfXaPEU7FcvEqnhbwhaP3mbjZ50rlxapuXdV198-Dv8QSgiE</recordid><startdate>20060503</startdate><enddate>20060503</enddate><creator>Kolakowski, Robert V</creator><creator>Shangguan, Ning</creator><creator>Sauers, Ronald R</creator><creator>Williams, Lawrence J</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20060503</creationdate><title>Mechanism of Thio Acid/Azide Amidation</title><author>Kolakowski, Robert V ; Shangguan, Ning ; Sauers, Ronald R ; Williams, Lawrence J</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a381t-171366dad3c5a7d7db202efce48b439bed0297fab1d2d787e1f96765173c228f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Acids - chemistry</topic><topic>Amides - chemistry</topic><topic>Azides - chemistry</topic><topic>Chemistry</topic><topic>Cyclization</topic><topic>Exact sciences and technology</topic><topic>Kinetics and mechanisms</topic><topic>Organic chemistry</topic><topic>Reactivity and mechanisms</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kolakowski, Robert V</creatorcontrib><creatorcontrib>Shangguan, Ning</creatorcontrib><creatorcontrib>Sauers, Ronald R</creatorcontrib><creatorcontrib>Williams, Lawrence J</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of the American Chemical Society</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kolakowski, Robert V</au><au>Shangguan, Ning</au><au>Sauers, Ronald R</au><au>Williams, Lawrence J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mechanism of Thio Acid/Azide Amidation</atitle><jtitle>Journal of the American Chemical Society</jtitle><addtitle>J. Am. Chem. Soc</addtitle><date>2006-05-03</date><risdate>2006</risdate><volume>128</volume><issue>17</issue><spage>5695</spage><epage>5702</epage><pages>5695-5702</pages><issn>0002-7863</issn><eissn>1520-5126</eissn><coden>JACSAT</coden><abstract>A combined experimental and computational mechanistic study of amide formation from thio acids and azides is described. The data support two distinct mechanistic pathways dependent on the electronic character of the azide component. Relatively electron-rich azides undergo bimolecular coupling with thiocarboxylates via an anion-accelerated [3+2] cycloaddition to give a thiatriazoline. Highly electron-poor azides couple via bimolecular union of the terminal nitrogen of the azide with sulfur of the thiocarboxylate to give a linear adduct. Cyclization of this intermediate gives a thiatriazoline. Decomposition to amide is found to proceed via retro-[3+2] cycloaddition of the neutral thiatriazoline intermediates. Computational analysis (DFT, 6-31+G(d)) identified pathways by which both classes of azide undergo [3+2] cycloaddition with thio acid to give thiatriazoline intermediates, although these paths are higher in energy than the thiocarboxylate amidations. These studies also establish that the reaction profile of electron-poor azides is attributable to a prior capture mechanism followed by intramolecular acylation.</abstract><cop>Washington, DC</cop><pub>American Chemical Society</pub><pmid>16637636</pmid><doi>10.1021/ja057533y</doi><tpages>8</tpages></addata></record> |
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subjects | Acids - chemistry Amides - chemistry Azides - chemistry Chemistry Cyclization Exact sciences and technology Kinetics and mechanisms Organic chemistry Reactivity and mechanisms |
title | Mechanism of Thio Acid/Azide Amidation |
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