Integration of tools and resources for display and analysis of genomic data for protozoan parasites
Centralisation of tools for analysis of genomic data is paramount in ensuring that research is always carried out on the latest currently available data. As such, World Wide Web sites providing a range of online analyses and displays of data can play a crucial role in guaranteeing consistency of in...
Gespeichert in:
| Veröffentlicht in: | International journal for parasitology 2005-04, Vol.35 (5), p.481-493 |
|---|---|
| Hauptverfasser: | , , , , , , , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 493 |
|---|---|
| container_issue | 5 |
| container_start_page | 481 |
| container_title | International journal for parasitology |
| container_volume | 35 |
| creator | Aslett, Martin Mooney, Paul Adlem, Ellen Berriman, Matthew Berry, Andrew Hertz-Fowler, Christiane Ivens, Alasdair C. Kerhornou, Arnaud Parkhill, Julian Peacock, Chris S. Wood, Valerie Rajandream, Marie-Adele Barrell, Bart Tivey, Adrian |
| description | Centralisation of tools for analysis of genomic data is paramount in ensuring that research is always carried out on the latest currently available data. As such, World Wide Web sites providing a range of online analyses and displays of data can play a crucial role in guaranteeing consistency of in silico work. In this respect, the protozoan parasite research community is served by several resources, either focussing on data and tools for one species or taking a broader view and providing tools for analysis of data from many species, thereby facilitating comparative studies. In this paper, we give a broad overview of the online resources available. We then focus on the GeneDB project, detailing the features and tools currently available through it. Finally, we discuss data curation and its importance in keeping genomic data ‘relevant’ to the research community. |
| doi_str_mv | 10.1016/j.ijpara.2005.01.011 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_67738735</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0020751905000500</els_id><sourcerecordid>67738735</sourcerecordid><originalsourceid>FETCH-LOGICAL-c481t-bc8e5e7a7744622e7bf63630e770a5881c2b35d7e4944a26de2d3f27917f7c793</originalsourceid><addsrcrecordid>eNqFkU9rGzEQxUVoSdy036C0e8ptXY3-76VQQtMEAj20OQtZmjUy65UrrQvup682a-itGQbmML8ZHu8R8h7oGiioT7t13B1cdmtGqVxTqA0XZAVGdy0FLl-RFaWMtlpCd0XelLKjFCQX4pJcgTRMKQEr4h_GCbfZTTGNTeqbKaWhNG4MTcaSjtljafqUmxDLYXCn540b3XAqscz8Fse0j74JbnLP4CGnKf1JbmxmcSVOWN6S170bCr47z2vydPf15-19-_j928Ptl8fWCwNTu_EGJWqntRCKMdSbXnHFKWpNnTQGPNtwGTSKTgjHVEAWeM90B7rXXnf8mtwsf6uGX0csk93H4nEY3IjpWKzSmhvN5YsgaKNqzaBYQJ9TKRl7e8hx7_LJArVzCnZnlxTsnIKlUBvq2Yfz_-Nmj-Hf0dn2CnxcgN4l67Y5Fvv0g9XUKO2MYYZV4vNCYDXsd8Rsi484egwxo59sSPH_Gv4CGrKkKQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>17866665</pqid></control><display><type>article</type><title>Integration of tools and resources for display and analysis of genomic data for protozoan parasites</title><source>MEDLINE</source><source>Elsevier ScienceDirect Journals</source><creator>Aslett, Martin ; Mooney, Paul ; Adlem, Ellen ; Berriman, Matthew ; Berry, Andrew ; Hertz-Fowler, Christiane ; Ivens, Alasdair C. ; Kerhornou, Arnaud ; Parkhill, Julian ; Peacock, Chris S. ; Wood, Valerie ; Rajandream, Marie-Adele ; Barrell, Bart ; Tivey, Adrian</creator><creatorcontrib>Aslett, Martin ; Mooney, Paul ; Adlem, Ellen ; Berriman, Matthew ; Berry, Andrew ; Hertz-Fowler, Christiane ; Ivens, Alasdair C. ; Kerhornou, Arnaud ; Parkhill, Julian ; Peacock, Chris S. ; Wood, Valerie ; Rajandream, Marie-Adele ; Barrell, Bart ; Tivey, Adrian</creatorcontrib><description>Centralisation of tools for analysis of genomic data is paramount in ensuring that research is always carried out on the latest currently available data. As such, World Wide Web sites providing a range of online analyses and displays of data can play a crucial role in guaranteeing consistency of in silico work. In this respect, the protozoan parasite research community is served by several resources, either focussing on data and tools for one species or taking a broader view and providing tools for analysis of data from many species, thereby facilitating comparative studies. In this paper, we give a broad overview of the online resources available. We then focus on the GeneDB project, detailing the features and tools currently available through it. Finally, we discuss data curation and its importance in keeping genomic data ‘relevant’ to the research community.</description><identifier>ISSN: 0020-7519</identifier><identifier>EISSN: 1879-0135</identifier><identifier>DOI: 10.1016/j.ijpara.2005.01.011</identifier><identifier>PMID: 15826641</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Analysis ; Animals ; Annotation ; bioinformatics ; Computational Biology ; Curation ; data analysis ; data curation ; database annotation ; Databases, Genetic ; gene banks ; gene ontology ; genome ; Genome, Protozoan ; Genomics ; information sources ; Information Storage and Retrieval ; information technology ; literature reviews ; online resources ; Online Systems ; parasites ; Protozoa ; world wide web</subject><ispartof>International journal for parasitology, 2005-04, Vol.35 (5), p.481-493</ispartof><rights>2005 Australian Society for Parasitology Inc</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c481t-bc8e5e7a7744622e7bf63630e770a5881c2b35d7e4944a26de2d3f27917f7c793</citedby><cites>FETCH-LOGICAL-c481t-bc8e5e7a7744622e7bf63630e770a5881c2b35d7e4944a26de2d3f27917f7c793</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0020751905000500$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15826641$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Aslett, Martin</creatorcontrib><creatorcontrib>Mooney, Paul</creatorcontrib><creatorcontrib>Adlem, Ellen</creatorcontrib><creatorcontrib>Berriman, Matthew</creatorcontrib><creatorcontrib>Berry, Andrew</creatorcontrib><creatorcontrib>Hertz-Fowler, Christiane</creatorcontrib><creatorcontrib>Ivens, Alasdair C.</creatorcontrib><creatorcontrib>Kerhornou, Arnaud</creatorcontrib><creatorcontrib>Parkhill, Julian</creatorcontrib><creatorcontrib>Peacock, Chris S.</creatorcontrib><creatorcontrib>Wood, Valerie</creatorcontrib><creatorcontrib>Rajandream, Marie-Adele</creatorcontrib><creatorcontrib>Barrell, Bart</creatorcontrib><creatorcontrib>Tivey, Adrian</creatorcontrib><title>Integration of tools and resources for display and analysis of genomic data for protozoan parasites</title><title>International journal for parasitology</title><addtitle>Int J Parasitol</addtitle><description>Centralisation of tools for analysis of genomic data is paramount in ensuring that research is always carried out on the latest currently available data. As such, World Wide Web sites providing a range of online analyses and displays of data can play a crucial role in guaranteeing consistency of in silico work. In this respect, the protozoan parasite research community is served by several resources, either focussing on data and tools for one species or taking a broader view and providing tools for analysis of data from many species, thereby facilitating comparative studies. In this paper, we give a broad overview of the online resources available. We then focus on the GeneDB project, detailing the features and tools currently available through it. Finally, we discuss data curation and its importance in keeping genomic data ‘relevant’ to the research community.</description><subject>Analysis</subject><subject>Animals</subject><subject>Annotation</subject><subject>bioinformatics</subject><subject>Computational Biology</subject><subject>Curation</subject><subject>data analysis</subject><subject>data curation</subject><subject>database annotation</subject><subject>Databases, Genetic</subject><subject>gene banks</subject><subject>gene ontology</subject><subject>genome</subject><subject>Genome, Protozoan</subject><subject>Genomics</subject><subject>information sources</subject><subject>Information Storage and Retrieval</subject><subject>information technology</subject><subject>literature reviews</subject><subject>online resources</subject><subject>Online Systems</subject><subject>parasites</subject><subject>Protozoa</subject><subject>world wide web</subject><issn>0020-7519</issn><issn>1879-0135</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU9rGzEQxUVoSdy036C0e8ptXY3-76VQQtMEAj20OQtZmjUy65UrrQvup682a-itGQbmML8ZHu8R8h7oGiioT7t13B1cdmtGqVxTqA0XZAVGdy0FLl-RFaWMtlpCd0XelLKjFCQX4pJcgTRMKQEr4h_GCbfZTTGNTeqbKaWhNG4MTcaSjtljafqUmxDLYXCn540b3XAqscz8Fse0j74JbnLP4CGnKf1JbmxmcSVOWN6S170bCr47z2vydPf15-19-_j928Ptl8fWCwNTu_EGJWqntRCKMdSbXnHFKWpNnTQGPNtwGTSKTgjHVEAWeM90B7rXXnf8mtwsf6uGX0csk93H4nEY3IjpWKzSmhvN5YsgaKNqzaBYQJ9TKRl7e8hx7_LJArVzCnZnlxTsnIKlUBvq2Yfz_-Nmj-Hf0dn2CnxcgN4l67Y5Fvv0g9XUKO2MYYZV4vNCYDXsd8Rsi484egwxo59sSPH_Gv4CGrKkKQ</recordid><startdate>20050430</startdate><enddate>20050430</enddate><creator>Aslett, Martin</creator><creator>Mooney, Paul</creator><creator>Adlem, Ellen</creator><creator>Berriman, Matthew</creator><creator>Berry, Andrew</creator><creator>Hertz-Fowler, Christiane</creator><creator>Ivens, Alasdair C.</creator><creator>Kerhornou, Arnaud</creator><creator>Parkhill, Julian</creator><creator>Peacock, Chris S.</creator><creator>Wood, Valerie</creator><creator>Rajandream, Marie-Adele</creator><creator>Barrell, Bart</creator><creator>Tivey, Adrian</creator><general>Elsevier Ltd</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>M7N</scope><scope>7X8</scope></search><sort><creationdate>20050430</creationdate><title>Integration of tools and resources for display and analysis of genomic data for protozoan parasites</title><author>Aslett, Martin ; Mooney, Paul ; Adlem, Ellen ; Berriman, Matthew ; Berry, Andrew ; Hertz-Fowler, Christiane ; Ivens, Alasdair C. ; Kerhornou, Arnaud ; Parkhill, Julian ; Peacock, Chris S. ; Wood, Valerie ; Rajandream, Marie-Adele ; Barrell, Bart ; Tivey, Adrian</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c481t-bc8e5e7a7744622e7bf63630e770a5881c2b35d7e4944a26de2d3f27917f7c793</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Analysis</topic><topic>Animals</topic><topic>Annotation</topic><topic>bioinformatics</topic><topic>Computational Biology</topic><topic>Curation</topic><topic>data analysis</topic><topic>data curation</topic><topic>database annotation</topic><topic>Databases, Genetic</topic><topic>gene banks</topic><topic>gene ontology</topic><topic>genome</topic><topic>Genome, Protozoan</topic><topic>Genomics</topic><topic>information sources</topic><topic>Information Storage and Retrieval</topic><topic>information technology</topic><topic>literature reviews</topic><topic>online resources</topic><topic>Online Systems</topic><topic>parasites</topic><topic>Protozoa</topic><topic>world wide web</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Aslett, Martin</creatorcontrib><creatorcontrib>Mooney, Paul</creatorcontrib><creatorcontrib>Adlem, Ellen</creatorcontrib><creatorcontrib>Berriman, Matthew</creatorcontrib><creatorcontrib>Berry, Andrew</creatorcontrib><creatorcontrib>Hertz-Fowler, Christiane</creatorcontrib><creatorcontrib>Ivens, Alasdair C.</creatorcontrib><creatorcontrib>Kerhornou, Arnaud</creatorcontrib><creatorcontrib>Parkhill, Julian</creatorcontrib><creatorcontrib>Peacock, Chris S.</creatorcontrib><creatorcontrib>Wood, Valerie</creatorcontrib><creatorcontrib>Rajandream, Marie-Adele</creatorcontrib><creatorcontrib>Barrell, Bart</creatorcontrib><creatorcontrib>Tivey, Adrian</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>MEDLINE - Academic</collection><jtitle>International journal for parasitology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Aslett, Martin</au><au>Mooney, Paul</au><au>Adlem, Ellen</au><au>Berriman, Matthew</au><au>Berry, Andrew</au><au>Hertz-Fowler, Christiane</au><au>Ivens, Alasdair C.</au><au>Kerhornou, Arnaud</au><au>Parkhill, Julian</au><au>Peacock, Chris S.</au><au>Wood, Valerie</au><au>Rajandream, Marie-Adele</au><au>Barrell, Bart</au><au>Tivey, Adrian</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Integration of tools and resources for display and analysis of genomic data for protozoan parasites</atitle><jtitle>International journal for parasitology</jtitle><addtitle>Int J Parasitol</addtitle><date>2005-04-30</date><risdate>2005</risdate><volume>35</volume><issue>5</issue><spage>481</spage><epage>493</epage><pages>481-493</pages><issn>0020-7519</issn><eissn>1879-0135</eissn><abstract>Centralisation of tools for analysis of genomic data is paramount in ensuring that research is always carried out on the latest currently available data. As such, World Wide Web sites providing a range of online analyses and displays of data can play a crucial role in guaranteeing consistency of in silico work. In this respect, the protozoan parasite research community is served by several resources, either focussing on data and tools for one species or taking a broader view and providing tools for analysis of data from many species, thereby facilitating comparative studies. In this paper, we give a broad overview of the online resources available. We then focus on the GeneDB project, detailing the features and tools currently available through it. Finally, we discuss data curation and its importance in keeping genomic data ‘relevant’ to the research community.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>15826641</pmid><doi>10.1016/j.ijpara.2005.01.011</doi><tpages>13</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0020-7519 |
| ispartof | International journal for parasitology, 2005-04, Vol.35 (5), p.481-493 |
| issn | 0020-7519 1879-0135 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_67738735 |
| source | MEDLINE; Elsevier ScienceDirect Journals |
| subjects | Analysis Animals Annotation bioinformatics Computational Biology Curation data analysis data curation database annotation Databases, Genetic gene banks gene ontology genome Genome, Protozoan Genomics information sources Information Storage and Retrieval information technology literature reviews online resources Online Systems parasites Protozoa world wide web |
| title | Integration of tools and resources for display and analysis of genomic data for protozoan parasites |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-03T05%3A23%3A07IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Integration%20of%20tools%20and%20resources%20for%20display%20and%20analysis%20of%20genomic%20data%20for%20protozoan%20parasites&rft.jtitle=International%20journal%20for%20parasitology&rft.au=Aslett,%20Martin&rft.date=2005-04-30&rft.volume=35&rft.issue=5&rft.spage=481&rft.epage=493&rft.pages=481-493&rft.issn=0020-7519&rft.eissn=1879-0135&rft_id=info:doi/10.1016/j.ijpara.2005.01.011&rft_dat=%3Cproquest_cross%3E67738735%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=17866665&rft_id=info:pmid/15826641&rft_els_id=S0020751905000500&rfr_iscdi=true |