Anharmonicity of Amide Modes
The principal contributions to the anharmonic coupling of amide vibrations are explored with the objective of comparing recent experiments with density functional theory and evaluating simple models of mode coupling. Experimental information obtained by means of two-dimensional infrared spectroscopy...
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Veröffentlicht in: | The journal of physical chemistry. B 2006-03, Vol.110 (8), p.3798-3807 |
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description | The principal contributions to the anharmonic coupling of amide vibrations are explored with the objective of comparing recent experiments with density functional theory and evaluating simple models of mode coupling. Experimental information obtained by means of two-dimensional infrared spectroscopy (2D IR) is reasonably well predicted by the computed one- and two-quantum anharmonic modes of amide-A, -I, and -II types in mono-, di- and tripeptides. The expansion of the vibrational energy up to the cubic and quartic coupling of harmonic modes suggested criteria to assess how localized are the forces determining the anharmonicity. The off-diagonal anharmonicity between an amide-A and one other amide mode was shown to be mainly determined by forces involving only these two modes, whereas the off-diagonal anharmonicity of two amide-I modes in peptides depended significantly on forces due to motions other than those of the amide-I type. Both the diagonal and off-diagonal anharmonicities exhibit sensitivity to peptide structures. These results should prove useful in linking 2D IR experimental results to secondary structure. Further, the results are used to evaluate the vibrational exciton model for the mixed-mode anharmonicities of the amide-I transitions. |
doi_str_mv | 10.1021/jp0530092 |
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Experimental information obtained by means of two-dimensional infrared spectroscopy (2D IR) is reasonably well predicted by the computed one- and two-quantum anharmonic modes of amide-A, -I, and -II types in mono-, di- and tripeptides. The expansion of the vibrational energy up to the cubic and quartic coupling of harmonic modes suggested criteria to assess how localized are the forces determining the anharmonicity. The off-diagonal anharmonicity between an amide-A and one other amide mode was shown to be mainly determined by forces involving only these two modes, whereas the off-diagonal anharmonicity of two amide-I modes in peptides depended significantly on forces due to motions other than those of the amide-I type. Both the diagonal and off-diagonal anharmonicities exhibit sensitivity to peptide structures. These results should prove useful in linking 2D IR experimental results to secondary structure. Further, the results are used to evaluate the vibrational exciton model for the mixed-mode anharmonicities of the amide-I transitions.</description><identifier>ISSN: 1520-6106</identifier><identifier>EISSN: 1520-5207</identifier><identifier>DOI: 10.1021/jp0530092</identifier><identifier>PMID: 16494439</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Amides - chemistry ; Hydrogen Bonding ; Models, Chemical ; Peptides - chemistry ; Protein Conformation ; Spectrophotometry, Infrared - methods</subject><ispartof>The journal of physical chemistry. 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The off-diagonal anharmonicity between an amide-A and one other amide mode was shown to be mainly determined by forces involving only these two modes, whereas the off-diagonal anharmonicity of two amide-I modes in peptides depended significantly on forces due to motions other than those of the amide-I type. Both the diagonal and off-diagonal anharmonicities exhibit sensitivity to peptide structures. These results should prove useful in linking 2D IR experimental results to secondary structure. Further, the results are used to evaluate the vibrational exciton model for the mixed-mode anharmonicities of the amide-I transitions.</description><subject>Amides - chemistry</subject><subject>Hydrogen Bonding</subject><subject>Models, Chemical</subject><subject>Peptides - chemistry</subject><subject>Protein Conformation</subject><subject>Spectrophotometry, Infrared - methods</subject><issn>1520-6106</issn><issn>1520-5207</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpt0E1Lw0AQBuBFFKvVg3eRXhQ8RGe_k2OpHxUqtlgvXpbdzQZTm6TuJmD_vZGEevEw7MA-zDAvQmcYbjAQfLvaAKcACdlDR5gTiNqS-30vMIgBOg5hBUA4icUhGmDBEsZocoTOx-WH9kVV5javt6MqG42LPHWj5yp14QQdZHod3Gn_DtHbw_1yMo1mL49Pk_Es0pTjOpIxMzbhicQ6ozwjwLXFAtNEADWO2lQ6y4zhBptMAEhKUpbEgjIaS8M4oUN01c3d-OqrcaFWRR6sW6916aomKCFFHDMqWnjdQeurELzL1MbnhfZbhUH9RqF2UbT2oh_amMKlf7K_vQVRB_JQu-_dv_af7UIquVrOX9WcwfvdYjZVi9Zfdl7boFZV48s2k38W_wD61nCT</recordid><startdate>20060302</startdate><enddate>20060302</enddate><creator>Wang, Jianping</creator><creator>Hochstrasser, Robin M</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20060302</creationdate><title>Anharmonicity of Amide Modes</title><author>Wang, Jianping ; Hochstrasser, Robin M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a351t-784bc95971af35f205ac16139603be3cd7ec4bb5b1bf600732d498634387b4523</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>Amides - chemistry</topic><topic>Hydrogen Bonding</topic><topic>Models, Chemical</topic><topic>Peptides - chemistry</topic><topic>Protein Conformation</topic><topic>Spectrophotometry, Infrared - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Jianping</creatorcontrib><creatorcontrib>Hochstrasser, Robin M</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>The journal of physical chemistry. B</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Jianping</au><au>Hochstrasser, Robin M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Anharmonicity of Amide Modes</atitle><jtitle>The journal of physical chemistry. B</jtitle><addtitle>J. Phys. Chem. B</addtitle><date>2006-03-02</date><risdate>2006</risdate><volume>110</volume><issue>8</issue><spage>3798</spage><epage>3807</epage><pages>3798-3807</pages><issn>1520-6106</issn><eissn>1520-5207</eissn><abstract>The principal contributions to the anharmonic coupling of amide vibrations are explored with the objective of comparing recent experiments with density functional theory and evaluating simple models of mode coupling. Experimental information obtained by means of two-dimensional infrared spectroscopy (2D IR) is reasonably well predicted by the computed one- and two-quantum anharmonic modes of amide-A, -I, and -II types in mono-, di- and tripeptides. The expansion of the vibrational energy up to the cubic and quartic coupling of harmonic modes suggested criteria to assess how localized are the forces determining the anharmonicity. The off-diagonal anharmonicity between an amide-A and one other amide mode was shown to be mainly determined by forces involving only these two modes, whereas the off-diagonal anharmonicity of two amide-I modes in peptides depended significantly on forces due to motions other than those of the amide-I type. Both the diagonal and off-diagonal anharmonicities exhibit sensitivity to peptide structures. These results should prove useful in linking 2D IR experimental results to secondary structure. Further, the results are used to evaluate the vibrational exciton model for the mixed-mode anharmonicities of the amide-I transitions.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>16494439</pmid><doi>10.1021/jp0530092</doi><tpages>10</tpages></addata></record> |
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subjects | Amides - chemistry Hydrogen Bonding Models, Chemical Peptides - chemistry Protein Conformation Spectrophotometry, Infrared - methods |
title | Anharmonicity of Amide Modes |
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