Structure, electronic circular dichroism and Raman optical activity in the gas phase and in solution: a computational and experimental investigation
A computational (ab initio and molecular dynamics) and experimental exploration of the relative importance of molecular conformation and explicit solvent effects on the electronic circular dichroism (ECD) of chiral molecules, is presented. The exploration includes an assessment of the validity of an...
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description | A computational (ab initio and molecular dynamics) and experimental exploration of the relative importance of molecular conformation and explicit solvent effects on the electronic circular dichroism (ECD) of chiral molecules, is presented. The exploration includes an assessment of the validity of angular correlation (sector) rules linking ECD to molecular conformation. It is based upon studies of 1-(R) phenylethanol (including its Raman optical activity spectrum), the corresponding 'benchmark' base, 1-(R)-phenylethylamine and its protonated cation; their hydrated clusters in the gas phase; and their non-polar and aqueous solutions. Emphasis is placed on the influence of specific, hydrogen bonded interactions with the aqueous solvent. The theoretical validity of the (otherwise empirical) sector rule in the neutral molecules and in their specifically hydrated clusters has been established--but with a reversal of the 'historical' sign convention. Protonation of the amine leads to a breakdown of the conventional sector rule but the change in its ECD intensity can still be related to the side chain dihedral angular dependence of its rotatory strength, computed ab initio for its explicitly hydrated clusters. Comparisons between ECD spectra measured in aqueous and in hydrocarbon solutions and the results of molecular dynamics calculations for aqueous solutions at 300 K, identify solvent induced structural change as the principal determinant of their relative ECD spectral intensities. Further links connecting the structures and conformations of chiral molecules and their explicitly solvated clusters in the gas phase, to their structures and conformational populations in solution can be expected through measurement, ab initio computation and analysis of their vibrational, ROA spectra. |
doi_str_mv | 10.1039/b501098e |
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The exploration includes an assessment of the validity of angular correlation (sector) rules linking ECD to molecular conformation. It is based upon studies of 1-(R) phenylethanol (including its Raman optical activity spectrum), the corresponding 'benchmark' base, 1-(R)-phenylethylamine and its protonated cation; their hydrated clusters in the gas phase; and their non-polar and aqueous solutions. Emphasis is placed on the influence of specific, hydrogen bonded interactions with the aqueous solvent. The theoretical validity of the (otherwise empirical) sector rule in the neutral molecules and in their specifically hydrated clusters has been established--but with a reversal of the 'historical' sign convention. Protonation of the amine leads to a breakdown of the conventional sector rule but the change in its ECD intensity can still be related to the side chain dihedral angular dependence of its rotatory strength, computed ab initio for its explicitly hydrated clusters. Comparisons between ECD spectra measured in aqueous and in hydrocarbon solutions and the results of molecular dynamics calculations for aqueous solutions at 300 K, identify solvent induced structural change as the principal determinant of their relative ECD spectral intensities. Further links connecting the structures and conformations of chiral molecules and their explicitly solvated clusters in the gas phase, to their structures and conformational populations in solution can be expected through measurement, ab initio computation and analysis of their vibrational, ROA spectra.</description><identifier>ISSN: 1463-9076</identifier><identifier>EISSN: 1463-9084</identifier><identifier>DOI: 10.1039/b501098e</identifier><identifier>PMID: 19787965</identifier><language>eng</language><publisher>England</publisher><subject>Benzyl Alcohols - chemistry ; Circular Dichroism - methods ; Computer Simulation ; Electrons ; Gases - chemistry ; Hydrogen Bonding ; Models, Chemical ; Molecular Structure ; Phenethylamines - chemistry ; Quantum Theory ; Solutions ; Solvents - chemistry ; Spectrum Analysis, Raman ; Time Factors ; Vibration ; Water - chemistry</subject><ispartof>Physical chemistry chemical physics : PCCP, 2005-04, Vol.7 (7), p.1432-1440</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c347t-938cc22f91d8bf2f17148f4a56b435726e47fabf6876de11239813ef40c915c3</citedby><cites>FETCH-LOGICAL-c347t-938cc22f91d8bf2f17148f4a56b435726e47fabf6876de11239813ef40c915c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,2831,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19787965$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Macleod, Neil A</creatorcontrib><creatorcontrib>Butz, Patrick</creatorcontrib><creatorcontrib>Simons, John P</creatorcontrib><creatorcontrib>Grant, Guy H</creatorcontrib><creatorcontrib>Baker, Christopher M</creatorcontrib><creatorcontrib>Tranter, George E</creatorcontrib><title>Structure, electronic circular dichroism and Raman optical activity in the gas phase and in solution: a computational and experimental investigation</title><title>Physical chemistry chemical physics : PCCP</title><addtitle>Phys Chem Chem Phys</addtitle><description>A computational (ab initio and molecular dynamics) and experimental exploration of the relative importance of molecular conformation and explicit solvent effects on the electronic circular dichroism (ECD) of chiral molecules, is presented. The exploration includes an assessment of the validity of angular correlation (sector) rules linking ECD to molecular conformation. It is based upon studies of 1-(R) phenylethanol (including its Raman optical activity spectrum), the corresponding 'benchmark' base, 1-(R)-phenylethylamine and its protonated cation; their hydrated clusters in the gas phase; and their non-polar and aqueous solutions. Emphasis is placed on the influence of specific, hydrogen bonded interactions with the aqueous solvent. The theoretical validity of the (otherwise empirical) sector rule in the neutral molecules and in their specifically hydrated clusters has been established--but with a reversal of the 'historical' sign convention. Protonation of the amine leads to a breakdown of the conventional sector rule but the change in its ECD intensity can still be related to the side chain dihedral angular dependence of its rotatory strength, computed ab initio for its explicitly hydrated clusters. Comparisons between ECD spectra measured in aqueous and in hydrocarbon solutions and the results of molecular dynamics calculations for aqueous solutions at 300 K, identify solvent induced structural change as the principal determinant of their relative ECD spectral intensities. Further links connecting the structures and conformations of chiral molecules and their explicitly solvated clusters in the gas phase, to their structures and conformational populations in solution can be expected through measurement, ab initio computation and analysis of their vibrational, ROA spectra.</description><subject>Benzyl Alcohols - chemistry</subject><subject>Circular Dichroism - methods</subject><subject>Computer Simulation</subject><subject>Electrons</subject><subject>Gases - chemistry</subject><subject>Hydrogen Bonding</subject><subject>Models, Chemical</subject><subject>Molecular Structure</subject><subject>Phenethylamines - chemistry</subject><subject>Quantum Theory</subject><subject>Solutions</subject><subject>Solvents - chemistry</subject><subject>Spectrum Analysis, Raman</subject><subject>Time Factors</subject><subject>Vibration</subject><subject>Water - chemistry</subject><issn>1463-9076</issn><issn>1463-9084</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkdtKxDAQhoMorifwCSRX4oWrSZMmjXeyeAJBUO9Lmk52I21Tk3Rx38MHtqurXs3MzzcH5kfomJILSpi6rHJCiSpgC-1RLthUkYJv_-VSTNB-jG-EEJpTtosmVMlCKpHvoc-XFAaThgDnGBowKfjOGWxcMEOjA66dWQTvYot1V-Nn3eoO-z45oxusTXJLl1bYdTgtAM91xP1CR_hmRzH6ZkjOd1dYY-Pbfkh6Xa5bRwA-egiuhS6NguuWEJObfwOHaMfqJsLRJh6g19ub19n99PHp7mF2_Tg1jMs0VawwJsusonVR2cxSSXlhuc5FxVkuMwFcWl1ZUUhRA6UZUwVlYDkxiuaGHaDTn7F98O_DuL5sXTTQNLoDP8RSSJFlQvARPPsBTfAxBrBlPx6uw6qkpFwbUP4aMKInm5lD1UL9D24-zr4ABPqDnw</recordid><startdate>20050407</startdate><enddate>20050407</enddate><creator>Macleod, Neil A</creator><creator>Butz, Patrick</creator><creator>Simons, John P</creator><creator>Grant, Guy H</creator><creator>Baker, Christopher M</creator><creator>Tranter, George E</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20050407</creationdate><title>Structure, electronic circular dichroism and Raman optical activity in the gas phase and in solution: a computational and experimental investigation</title><author>Macleod, Neil A ; Butz, Patrick ; Simons, John P ; Grant, Guy H ; Baker, Christopher M ; Tranter, George E</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c347t-938cc22f91d8bf2f17148f4a56b435726e47fabf6876de11239813ef40c915c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Benzyl Alcohols - chemistry</topic><topic>Circular Dichroism - methods</topic><topic>Computer Simulation</topic><topic>Electrons</topic><topic>Gases - chemistry</topic><topic>Hydrogen Bonding</topic><topic>Models, Chemical</topic><topic>Molecular Structure</topic><topic>Phenethylamines - chemistry</topic><topic>Quantum Theory</topic><topic>Solutions</topic><topic>Solvents - chemistry</topic><topic>Spectrum Analysis, Raman</topic><topic>Time Factors</topic><topic>Vibration</topic><topic>Water - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Macleod, Neil A</creatorcontrib><creatorcontrib>Butz, Patrick</creatorcontrib><creatorcontrib>Simons, John P</creatorcontrib><creatorcontrib>Grant, Guy H</creatorcontrib><creatorcontrib>Baker, Christopher M</creatorcontrib><creatorcontrib>Tranter, George E</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Physical chemistry chemical physics : PCCP</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Macleod, Neil A</au><au>Butz, Patrick</au><au>Simons, John P</au><au>Grant, Guy H</au><au>Baker, Christopher M</au><au>Tranter, George E</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Structure, electronic circular dichroism and Raman optical activity in the gas phase and in solution: a computational and experimental investigation</atitle><jtitle>Physical chemistry chemical physics : PCCP</jtitle><addtitle>Phys Chem Chem Phys</addtitle><date>2005-04-07</date><risdate>2005</risdate><volume>7</volume><issue>7</issue><spage>1432</spage><epage>1440</epage><pages>1432-1440</pages><issn>1463-9076</issn><eissn>1463-9084</eissn><abstract>A computational (ab initio and molecular dynamics) and experimental exploration of the relative importance of molecular conformation and explicit solvent effects on the electronic circular dichroism (ECD) of chiral molecules, is presented. The exploration includes an assessment of the validity of angular correlation (sector) rules linking ECD to molecular conformation. It is based upon studies of 1-(R) phenylethanol (including its Raman optical activity spectrum), the corresponding 'benchmark' base, 1-(R)-phenylethylamine and its protonated cation; their hydrated clusters in the gas phase; and their non-polar and aqueous solutions. Emphasis is placed on the influence of specific, hydrogen bonded interactions with the aqueous solvent. The theoretical validity of the (otherwise empirical) sector rule in the neutral molecules and in their specifically hydrated clusters has been established--but with a reversal of the 'historical' sign convention. Protonation of the amine leads to a breakdown of the conventional sector rule but the change in its ECD intensity can still be related to the side chain dihedral angular dependence of its rotatory strength, computed ab initio for its explicitly hydrated clusters. Comparisons between ECD spectra measured in aqueous and in hydrocarbon solutions and the results of molecular dynamics calculations for aqueous solutions at 300 K, identify solvent induced structural change as the principal determinant of their relative ECD spectral intensities. Further links connecting the structures and conformations of chiral molecules and their explicitly solvated clusters in the gas phase, to their structures and conformational populations in solution can be expected through measurement, ab initio computation and analysis of their vibrational, ROA spectra.</abstract><cop>England</cop><pmid>19787965</pmid><doi>10.1039/b501098e</doi><tpages>9</tpages></addata></record> |
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subjects | Benzyl Alcohols - chemistry Circular Dichroism - methods Computer Simulation Electrons Gases - chemistry Hydrogen Bonding Models, Chemical Molecular Structure Phenethylamines - chemistry Quantum Theory Solutions Solvents - chemistry Spectrum Analysis, Raman Time Factors Vibration Water - chemistry |
title | Structure, electronic circular dichroism and Raman optical activity in the gas phase and in solution: a computational and experimental investigation |
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