Quantifying noise in optical tweezers by allan variance
Much effort is put into minimizing noise in optical tweezers experiments because noise and drift can mask fundamental behaviours of, e.g., single molecule assays. Various initiatives have been taken to reduce or eliminate noise but it has been difficult to quantify their effect. We propose to use Al...
Gespeichert in:
Veröffentlicht in: | Optics express 2009-07, Vol.17 (15), p.13255-13269 |
---|---|
Hauptverfasser: | , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 13269 |
---|---|
container_issue | 15 |
container_start_page | 13255 |
container_title | Optics express |
container_volume | 17 |
creator | Czerwinski, Fabian Richardson, Andrew C Oddershede, Lene B |
description | Much effort is put into minimizing noise in optical tweezers experiments because noise and drift can mask fundamental behaviours of, e.g., single molecule assays. Various initiatives have been taken to reduce or eliminate noise but it has been difficult to quantify their effect. We propose to use Allan variance as a simple and efficient method to quantify noise in optical tweezers setups.We apply the method to determine the optimal measurement time, frequency, and detection scheme, and quantify the effect of acoustic noise in the lab. The method can also be used on-the-fly for determining optimal parameters of running experiments. |
doi_str_mv | 10.1364/oe.17.013255 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_67560047</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>67560047</sourcerecordid><originalsourceid>FETCH-LOGICAL-c393t-daa3a5cca53a235d869be514fad1fc2d6e102358e5992708b4a578f10ce54be33</originalsourceid><addsrcrecordid>eNpNkE1Lw0AQhhdRbK3ePMuePJm6k93NZo9S6gcUiqDnZbKZyEqa1GyitL_elhb0NC_Dw8vMw9g1iCnITN23NAUzFSBTrU_YGIRViRK5Of2XR-wixk8hQBlrztkIbKaVkTBm5nXApg_VJjQfvGlDJB4a3q774LHm_Q_RlrrIiw3HusaGf2MXsPF0yc4qrCNdHeeEvT_O32bPyWL59DJ7WCReWtknJaJE7T1qianUZZ7ZgjSoCkuofFpmBGK3z0lbmxqRFwq1ySsQnrQqSMoJuz30rrv2a6DYu1WInva3UDtElxmdCbH7ZcLuDqDv2hg7qty6CyvsNg6E24tyy7kD4w6idvjNsXcoVlT-wUcz8heybWMD</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>67560047</pqid></control><display><type>article</type><title>Quantifying noise in optical tweezers by allan variance</title><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Alma/SFX Local Collection</source><creator>Czerwinski, Fabian ; Richardson, Andrew C ; Oddershede, Lene B</creator><creatorcontrib>Czerwinski, Fabian ; Richardson, Andrew C ; Oddershede, Lene B</creatorcontrib><description>Much effort is put into minimizing noise in optical tweezers experiments because noise and drift can mask fundamental behaviours of, e.g., single molecule assays. Various initiatives have been taken to reduce or eliminate noise but it has been difficult to quantify their effect. We propose to use Allan variance as a simple and efficient method to quantify noise in optical tweezers setups.We apply the method to determine the optimal measurement time, frequency, and detection scheme, and quantify the effect of acoustic noise in the lab. The method can also be used on-the-fly for determining optimal parameters of running experiments.</description><identifier>ISSN: 1094-4087</identifier><identifier>EISSN: 1094-4087</identifier><identifier>DOI: 10.1364/oe.17.013255</identifier><identifier>PMID: 19654731</identifier><language>eng</language><publisher>United States</publisher><subject>Acoustics ; Calibration ; Equipment Design ; Fourier Analysis ; Lasers ; Light ; Magnetics ; Microscopy - methods ; Models, Statistical ; Monte Carlo Method ; Optical Tweezers ; Optics and Photonics ; Photochemistry - methods ; Probability ; Stochastic Processes</subject><ispartof>Optics express, 2009-07, Vol.17 (15), p.13255-13269</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c393t-daa3a5cca53a235d869be514fad1fc2d6e102358e5992708b4a578f10ce54be33</citedby><cites>FETCH-LOGICAL-c393t-daa3a5cca53a235d869be514fad1fc2d6e102358e5992708b4a578f10ce54be33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,781,785,865,27929,27930</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19654731$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Czerwinski, Fabian</creatorcontrib><creatorcontrib>Richardson, Andrew C</creatorcontrib><creatorcontrib>Oddershede, Lene B</creatorcontrib><title>Quantifying noise in optical tweezers by allan variance</title><title>Optics express</title><addtitle>Opt Express</addtitle><description>Much effort is put into minimizing noise in optical tweezers experiments because noise and drift can mask fundamental behaviours of, e.g., single molecule assays. Various initiatives have been taken to reduce or eliminate noise but it has been difficult to quantify their effect. We propose to use Allan variance as a simple and efficient method to quantify noise in optical tweezers setups.We apply the method to determine the optimal measurement time, frequency, and detection scheme, and quantify the effect of acoustic noise in the lab. The method can also be used on-the-fly for determining optimal parameters of running experiments.</description><subject>Acoustics</subject><subject>Calibration</subject><subject>Equipment Design</subject><subject>Fourier Analysis</subject><subject>Lasers</subject><subject>Light</subject><subject>Magnetics</subject><subject>Microscopy - methods</subject><subject>Models, Statistical</subject><subject>Monte Carlo Method</subject><subject>Optical Tweezers</subject><subject>Optics and Photonics</subject><subject>Photochemistry - methods</subject><subject>Probability</subject><subject>Stochastic Processes</subject><issn>1094-4087</issn><issn>1094-4087</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkE1Lw0AQhhdRbK3ePMuePJm6k93NZo9S6gcUiqDnZbKZyEqa1GyitL_elhb0NC_Dw8vMw9g1iCnITN23NAUzFSBTrU_YGIRViRK5Of2XR-wixk8hQBlrztkIbKaVkTBm5nXApg_VJjQfvGlDJB4a3q774LHm_Q_RlrrIiw3HusaGf2MXsPF0yc4qrCNdHeeEvT_O32bPyWL59DJ7WCReWtknJaJE7T1qianUZZ7ZgjSoCkuofFpmBGK3z0lbmxqRFwq1ySsQnrQqSMoJuz30rrv2a6DYu1WInva3UDtElxmdCbH7ZcLuDqDv2hg7qty6CyvsNg6E24tyy7kD4w6idvjNsXcoVlT-wUcz8heybWMD</recordid><startdate>20090720</startdate><enddate>20090720</enddate><creator>Czerwinski, Fabian</creator><creator>Richardson, Andrew C</creator><creator>Oddershede, Lene B</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20090720</creationdate><title>Quantifying noise in optical tweezers by allan variance</title><author>Czerwinski, Fabian ; Richardson, Andrew C ; Oddershede, Lene B</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c393t-daa3a5cca53a235d869be514fad1fc2d6e102358e5992708b4a578f10ce54be33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Acoustics</topic><topic>Calibration</topic><topic>Equipment Design</topic><topic>Fourier Analysis</topic><topic>Lasers</topic><topic>Light</topic><topic>Magnetics</topic><topic>Microscopy - methods</topic><topic>Models, Statistical</topic><topic>Monte Carlo Method</topic><topic>Optical Tweezers</topic><topic>Optics and Photonics</topic><topic>Photochemistry - methods</topic><topic>Probability</topic><topic>Stochastic Processes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Czerwinski, Fabian</creatorcontrib><creatorcontrib>Richardson, Andrew C</creatorcontrib><creatorcontrib>Oddershede, Lene B</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Optics express</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Czerwinski, Fabian</au><au>Richardson, Andrew C</au><au>Oddershede, Lene B</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Quantifying noise in optical tweezers by allan variance</atitle><jtitle>Optics express</jtitle><addtitle>Opt Express</addtitle><date>2009-07-20</date><risdate>2009</risdate><volume>17</volume><issue>15</issue><spage>13255</spage><epage>13269</epage><pages>13255-13269</pages><issn>1094-4087</issn><eissn>1094-4087</eissn><abstract>Much effort is put into minimizing noise in optical tweezers experiments because noise and drift can mask fundamental behaviours of, e.g., single molecule assays. Various initiatives have been taken to reduce or eliminate noise but it has been difficult to quantify their effect. We propose to use Allan variance as a simple and efficient method to quantify noise in optical tweezers setups.We apply the method to determine the optimal measurement time, frequency, and detection scheme, and quantify the effect of acoustic noise in the lab. The method can also be used on-the-fly for determining optimal parameters of running experiments.</abstract><cop>United States</cop><pmid>19654731</pmid><doi>10.1364/oe.17.013255</doi><tpages>15</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1094-4087 |
ispartof | Optics express, 2009-07, Vol.17 (15), p.13255-13269 |
issn | 1094-4087 1094-4087 |
language | eng |
recordid | cdi_proquest_miscellaneous_67560047 |
source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
subjects | Acoustics Calibration Equipment Design Fourier Analysis Lasers Light Magnetics Microscopy - methods Models, Statistical Monte Carlo Method Optical Tweezers Optics and Photonics Photochemistry - methods Probability Stochastic Processes |
title | Quantifying noise in optical tweezers by allan variance |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-15T20%3A16%3A31IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Quantifying%20noise%20in%20optical%20tweezers%20by%20allan%20variance&rft.jtitle=Optics%20express&rft.au=Czerwinski,%20Fabian&rft.date=2009-07-20&rft.volume=17&rft.issue=15&rft.spage=13255&rft.epage=13269&rft.pages=13255-13269&rft.issn=1094-4087&rft.eissn=1094-4087&rft_id=info:doi/10.1364/oe.17.013255&rft_dat=%3Cproquest_cross%3E67560047%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=67560047&rft_id=info:pmid/19654731&rfr_iscdi=true |