Novel insertion sequence-like elements in phytoplasma strains of the aster yellows group are putative new members of the IS3 family
Novel insertion sequence (IS)-like elements were isolated and characterized from phytoplasma strains in the aster yellows (AY) group (16SrI). The IS-like elements were cloned from phytoplasma strains AY1 and NJAY or PCR-amplified from 15 additional strains representing nine subgroups in the AY group...
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| Veröffentlicht in: | FEMS microbiology letters 2005-01, Vol.242 (2), p.353-360 |
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| creator | Lee, I.-M. Zhao, Y. Bottner, K.D. |
| description | Novel insertion sequence (IS)-like elements were isolated and characterized from phytoplasma strains in the aster yellows (AY) group (16SrI). The IS-like elements were cloned from phytoplasma strains AY1 and NJAY or PCR-amplified from 15 additional strains representing nine subgroups in the AY group using primers based on sequences of the putative transposases (Tpases). All IS-like elements contained sequences encoding similar Tpases of 321 amino acids (320 for strain CPh). Substantial amino acid sequence variability suggested multiple species of Tpases or IS-like elements exist in the AY phytoplasma group. These Tpases have an identical DDE motif that is most similar to the DDE consensus of Tpases in the IS3 family. |
| doi_str_mv | 10.1016/j.femsle.2004.11.036 |
| format | Article |
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The IS-like elements were cloned from phytoplasma strains AY1 and NJAY or PCR-amplified from 15 additional strains representing nine subgroups in the AY group using primers based on sequences of the putative transposases (Tpases). All IS-like elements contained sequences encoding similar Tpases of 321 amino acids (320 for strain CPh). Substantial amino acid sequence variability suggested multiple species of Tpases or IS-like elements exist in the AY phytoplasma group. These Tpases have an identical DDE motif that is most similar to the DDE consensus of Tpases in the IS3 family.</description><identifier>ISSN: 0378-1097</identifier><identifier>EISSN: 1574-6968</identifier><identifier>DOI: 10.1016/j.femsle.2004.11.036</identifier><identifier>PMID: 15621459</identifier><identifier>CODEN: FMLED7</identifier><language>eng</language><publisher>Oxford, UK: Elsevier B.V</publisher><subject>16SrI (Aster yellows group) ; Amino Acid Sequence ; Amino acids ; Aster Plant - microbiology ; Aster yellows phytoplasma group ; Biological and medical sciences ; Blotting, Southern ; DDE ; DNA, Bacterial - analysis ; DNA, Bacterial - genetics ; Fundamental and applied biological sciences. Psychology ; Genome, Bacterial ; Growth, nutrition, metabolism, transports, enzymes. Molecular biology ; Insertion ; Insertion sequence ; Mexican periwinkle virescence phytoplasma group ; Microbiology ; Molecular Sequence Data ; Mycology ; Nitrous oxide ; Peanut witches'‐broom phytoplasma group ; Phylogeny ; Phytoplasma ; Phytoplasma - classification ; Phytoplasma - genetics ; Phytoplasma - isolation & purification ; Plant Diseases - microbiology ; Subgroups ; Transposases - genetics ; transposons ; Yellows</subject><ispartof>FEMS microbiology letters, 2005-01, Vol.242 (2), p.353-360</ispartof><rights>2004 Federation of European Microbiological Societies</rights><rights>2004 Federation of European Microbiological Societies 2004</rights><rights>2005 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c6083-2d643d53cee584e9ae9969efb26fced88a50d611a61c3223e1f5ad1e123fd14b3</citedby><cites>FETCH-LOGICAL-c6083-2d643d53cee584e9ae9969efb26fced88a50d611a61c3223e1f5ad1e123fd14b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1016%2Fj.femsle.2004.11.036$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1016%2Fj.femsle.2004.11.036$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27903,27904,45553,45554</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=16379497$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15621459$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lee, I.-M.</creatorcontrib><creatorcontrib>Zhao, Y.</creatorcontrib><creatorcontrib>Bottner, K.D.</creatorcontrib><title>Novel insertion sequence-like elements in phytoplasma strains of the aster yellows group are putative new members of the IS3 family</title><title>FEMS microbiology letters</title><addtitle>FEMS Microbiol Lett</addtitle><description>Novel insertion sequence (IS)-like elements were isolated and characterized from phytoplasma strains in the aster yellows (AY) group (16SrI). The IS-like elements were cloned from phytoplasma strains AY1 and NJAY or PCR-amplified from 15 additional strains representing nine subgroups in the AY group using primers based on sequences of the putative transposases (Tpases). All IS-like elements contained sequences encoding similar Tpases of 321 amino acids (320 for strain CPh). Substantial amino acid sequence variability suggested multiple species of Tpases or IS-like elements exist in the AY phytoplasma group. These Tpases have an identical DDE motif that is most similar to the DDE consensus of Tpases in the IS3 family.</description><subject>16SrI (Aster yellows group)</subject><subject>Amino Acid Sequence</subject><subject>Amino acids</subject><subject>Aster Plant - microbiology</subject><subject>Aster yellows phytoplasma group</subject><subject>Biological and medical sciences</subject><subject>Blotting, Southern</subject><subject>DDE</subject><subject>DNA, Bacterial - analysis</subject><subject>DNA, Bacterial - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genome, Bacterial</subject><subject>Growth, nutrition, metabolism, transports, enzymes. Molecular biology</subject><subject>Insertion</subject><subject>Insertion sequence</subject><subject>Mexican periwinkle virescence phytoplasma group</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Mycology</subject><subject>Nitrous oxide</subject><subject>Peanut witches'‐broom phytoplasma group</subject><subject>Phylogeny</subject><subject>Phytoplasma</subject><subject>Phytoplasma - classification</subject><subject>Phytoplasma - genetics</subject><subject>Phytoplasma - isolation & purification</subject><subject>Plant Diseases - microbiology</subject><subject>Subgroups</subject><subject>Transposases - genetics</subject><subject>transposons</subject><subject>Yellows</subject><issn>0378-1097</issn><issn>1574-6968</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkkFv1DAQhSMEotvCP0BgCcEtW4-dOMkFCVUUKi1wKD1bXmfcenHiYCe72nP_OF5lRSUO0JMv33vzxm-y7BXQJVAQ55ulwS46XDJKiyXAknLxJFtAWRW5aET9NFtQXtU50KY6yU5j3NAEMiqeZydQCgZF2Syy-29-i47YPmIYre9JxF8T9hpzZ38iQYcd9mNMABnu9qMfnIqdInEMKmmIN2S8Q6LiiIHs0Tm_i-Q2-GkgKiAZplGNdoukxx3psFtj-KO5uubEqM66_YvsmVEu4svje5bdXH76cfElX33_fHXxcZVrQWues1YUvC25RizrAhuFTSMaNGsmjMa2rlVJWwGgBGjOGEcwpWoBgXHTQrHmZ9n72XcIPi0ZR9nZqFNo1aOfohQVL0T62v-CUNWsZrxI4Nu_wI2fQp-WkIxTUZaiYge7YqZ08DEGNHIItlNhL4HKQ5dyI-cu5aFLCSBTl0n2-mg-rTtsH0TH8hLw7gioqJUzQfXaxgdO8Kopmipx9cztrMP9o4bLy68rXvIkPZ-lqdHHpn4zK4zyUt2GFOjmmlHgNN1hyg2J-DATmLreWgwyans4udYG1KNsvf33iN9UEOof</recordid><startdate>200501</startdate><enddate>200501</enddate><creator>Lee, I.-M.</creator><creator>Zhao, Y.</creator><creator>Bottner, K.D.</creator><general>Elsevier B.V</general><general>Blackwell Publishing Ltd</general><general>Blackwell</general><general>Oxford University Press</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>200501</creationdate><title>Novel insertion sequence-like elements in phytoplasma strains of the aster yellows group are putative new members of the IS3 family</title><author>Lee, I.-M. ; Zhao, Y. ; Bottner, K.D.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c6083-2d643d53cee584e9ae9969efb26fced88a50d611a61c3223e1f5ad1e123fd14b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>16SrI (Aster yellows group)</topic><topic>Amino Acid Sequence</topic><topic>Amino acids</topic><topic>Aster Plant - microbiology</topic><topic>Aster yellows phytoplasma group</topic><topic>Biological and medical sciences</topic><topic>Blotting, Southern</topic><topic>DDE</topic><topic>DNA, Bacterial - analysis</topic><topic>DNA, Bacterial - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genome, Bacterial</topic><topic>Growth, nutrition, metabolism, transports, enzymes. Molecular biology</topic><topic>Insertion</topic><topic>Insertion sequence</topic><topic>Mexican periwinkle virescence phytoplasma group</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Mycology</topic><topic>Nitrous oxide</topic><topic>Peanut witches'‐broom phytoplasma group</topic><topic>Phylogeny</topic><topic>Phytoplasma</topic><topic>Phytoplasma - classification</topic><topic>Phytoplasma - genetics</topic><topic>Phytoplasma - isolation & purification</topic><topic>Plant Diseases - microbiology</topic><topic>Subgroups</topic><topic>Transposases - genetics</topic><topic>transposons</topic><topic>Yellows</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lee, I.-M.</creatorcontrib><creatorcontrib>Zhao, Y.</creatorcontrib><creatorcontrib>Bottner, K.D.</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>FEMS microbiology letters</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lee, I.-M.</au><au>Zhao, Y.</au><au>Bottner, K.D.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Novel insertion sequence-like elements in phytoplasma strains of the aster yellows group are putative new members of the IS3 family</atitle><jtitle>FEMS microbiology letters</jtitle><addtitle>FEMS Microbiol Lett</addtitle><date>2005-01</date><risdate>2005</risdate><volume>242</volume><issue>2</issue><spage>353</spage><epage>360</epage><pages>353-360</pages><issn>0378-1097</issn><eissn>1574-6968</eissn><coden>FMLED7</coden><abstract>Novel insertion sequence (IS)-like elements were isolated and characterized from phytoplasma strains in the aster yellows (AY) group (16SrI). The IS-like elements were cloned from phytoplasma strains AY1 and NJAY or PCR-amplified from 15 additional strains representing nine subgroups in the AY group using primers based on sequences of the putative transposases (Tpases). All IS-like elements contained sequences encoding similar Tpases of 321 amino acids (320 for strain CPh). Substantial amino acid sequence variability suggested multiple species of Tpases or IS-like elements exist in the AY phytoplasma group. These Tpases have an identical DDE motif that is most similar to the DDE consensus of Tpases in the IS3 family.</abstract><cop>Oxford, UK</cop><pub>Elsevier B.V</pub><pmid>15621459</pmid><doi>10.1016/j.femsle.2004.11.036</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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| identifier | ISSN: 0378-1097 |
| ispartof | FEMS microbiology letters, 2005-01, Vol.242 (2), p.353-360 |
| issn | 0378-1097 1574-6968 |
| language | eng |
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| source | MEDLINE; Oxford University Press Journals All Titles (1996-Current); Wiley Online Library All Journals; Alma/SFX Local Collection |
| subjects | 16SrI (Aster yellows group) Amino Acid Sequence Amino acids Aster Plant - microbiology Aster yellows phytoplasma group Biological and medical sciences Blotting, Southern DDE DNA, Bacterial - analysis DNA, Bacterial - genetics Fundamental and applied biological sciences. Psychology Genome, Bacterial Growth, nutrition, metabolism, transports, enzymes. Molecular biology Insertion Insertion sequence Mexican periwinkle virescence phytoplasma group Microbiology Molecular Sequence Data Mycology Nitrous oxide Peanut witches'‐broom phytoplasma group Phylogeny Phytoplasma Phytoplasma - classification Phytoplasma - genetics Phytoplasma - isolation & purification Plant Diseases - microbiology Subgroups Transposases - genetics transposons Yellows |
| title | Novel insertion sequence-like elements in phytoplasma strains of the aster yellows group are putative new members of the IS3 family |
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