Serum hepatitis B DNA: stability in relation to multiple freeze–thaw procedures
Quantitation of hepatitis B virus (HBV) DNA is often performed in specimens that have been frozen and thawed more than once. It is important to establish whether viral load measurements are affected by repeated freeze–thaw cycles. The effect of multiple freeze–thaw cycles on HBV DNA quantitation was...
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Veröffentlicht in: | Journal of virological methods 2005, Vol.123 (1), p.49-52 |
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description | Quantitation of hepatitis B virus (HBV) DNA is often performed in specimens that have been frozen and thawed more than once. It is important to establish whether viral load measurements are affected by repeated freeze–thaw cycles. The effect of multiple freeze–thaw cycles on HBV DNA quantitation was carried out by testing serum specimens subjected to 1 (baseline) to 10 cycles with the appropriate Digene Hybrid Capture System.
Five HBV DNA-positive samples were selected at random from sera with concentrations ranging from 7
pg/ml to 3529
pg/ml and they were frozen and thawed up to 10 cycles and then tested for changes in HBV DNA levels. Negative control and positive standards were tested in triplicate; and all specimens were tested in duplicate. The stability of HBV DNA in serum was evaluated by scattergram analysis by determining the number of samples showing a ≥20% change in HBV DNA levels after freeze–thaw cycles.
With the exception of one sample (7
pg/ml) 10 cycles of freezing and thawing did not change significantly the HBV DNA quantity in any of the samples tested.
The results showed that the quantity of HBV DNA in four of five serum specimens subjected up to 10 freeze–thaw cycles was stable. |
doi_str_mv | 10.1016/j.jviromet.2004.09.006 |
format | Article |
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Five HBV DNA-positive samples were selected at random from sera with concentrations ranging from 7
pg/ml to 3529
pg/ml and they were frozen and thawed up to 10 cycles and then tested for changes in HBV DNA levels. Negative control and positive standards were tested in triplicate; and all specimens were tested in duplicate. The stability of HBV DNA in serum was evaluated by scattergram analysis by determining the number of samples showing a ≥20% change in HBV DNA levels after freeze–thaw cycles.
With the exception of one sample (7
pg/ml) 10 cycles of freezing and thawing did not change significantly the HBV DNA quantity in any of the samples tested.
The results showed that the quantity of HBV DNA in four of five serum specimens subjected up to 10 freeze–thaw cycles was stable.</description><identifier>ISSN: 0166-0934</identifier><identifier>EISSN: 1879-0984</identifier><identifier>DOI: 10.1016/j.jviromet.2004.09.006</identifier><identifier>PMID: 15582698</identifier><identifier>CODEN: JVMEDH</identifier><language>eng</language><publisher>London: Elsevier B.V</publisher><subject>Biological and medical sciences ; DNA, Viral - blood ; DNA, Viral - chemistry ; Freeze and thaw ; Freezing ; Fundamental and applied biological sciences. Psychology ; Hepatitis B - virology ; Hepatitis B virus ; Hepatitis B virus - genetics ; Hepatitis B virus - isolation & purification ; Hepatitis B virus - physiology ; Hepatitis B virus DNA ; Humans ; Hybridization ; Microbiology ; Specimen Handling - methods ; Stability ; Techniques used in virology ; Viral Load ; Virology</subject><ispartof>Journal of virological methods, 2005, Vol.123 (1), p.49-52</ispartof><rights>2004 Elsevier B.V.</rights><rights>2005 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c425t-c8227ae0bf9a13da3f6bcec9ca832d47f1e6d98ea71d1f9ed7b662388af885293</citedby><cites>FETCH-LOGICAL-c425t-c8227ae0bf9a13da3f6bcec9ca832d47f1e6d98ea71d1f9ed7b662388af885293</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0166093404002678$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,4010,27900,27901,27902,65306</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=16372696$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15582698$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sanlidag, Tamer</creatorcontrib><creatorcontrib>Akcali, Sinem</creatorcontrib><creatorcontrib>Ozbakkaloglu, Beril</creatorcontrib><title>Serum hepatitis B DNA: stability in relation to multiple freeze–thaw procedures</title><title>Journal of virological methods</title><addtitle>J Virol Methods</addtitle><description>Quantitation of hepatitis B virus (HBV) DNA is often performed in specimens that have been frozen and thawed more than once. It is important to establish whether viral load measurements are affected by repeated freeze–thaw cycles. The effect of multiple freeze–thaw cycles on HBV DNA quantitation was carried out by testing serum specimens subjected to 1 (baseline) to 10 cycles with the appropriate Digene Hybrid Capture System.
Five HBV DNA-positive samples were selected at random from sera with concentrations ranging from 7
pg/ml to 3529
pg/ml and they were frozen and thawed up to 10 cycles and then tested for changes in HBV DNA levels. Negative control and positive standards were tested in triplicate; and all specimens were tested in duplicate. The stability of HBV DNA in serum was evaluated by scattergram analysis by determining the number of samples showing a ≥20% change in HBV DNA levels after freeze–thaw cycles.
With the exception of one sample (7
pg/ml) 10 cycles of freezing and thawing did not change significantly the HBV DNA quantity in any of the samples tested.
The results showed that the quantity of HBV DNA in four of five serum specimens subjected up to 10 freeze–thaw cycles was stable.</description><subject>Biological and medical sciences</subject><subject>DNA, Viral - blood</subject><subject>DNA, Viral - chemistry</subject><subject>Freeze and thaw</subject><subject>Freezing</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Hepatitis B - virology</subject><subject>Hepatitis B virus</subject><subject>Hepatitis B virus - genetics</subject><subject>Hepatitis B virus - isolation & purification</subject><subject>Hepatitis B virus - physiology</subject><subject>Hepatitis B virus DNA</subject><subject>Humans</subject><subject>Hybridization</subject><subject>Microbiology</subject><subject>Specimen Handling - methods</subject><subject>Stability</subject><subject>Techniques used in virology</subject><subject>Viral Load</subject><subject>Virology</subject><issn>0166-0934</issn><issn>1879-0984</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkEtuFDEQhi1ERIbAFSJvYDdNud3tBytCeEWKQAhYW253WfGoH4PtDgor7pAb5iR4mEFZRrJUlvxV_eWPkFMGFQMmXm2qzXWI84i5qgGaCnQFIB6RFVNSr0Gr5jFZFVCUO2-OydOUNgDQSs6fkGPWtqoWWq3I128Yl5Fe4dbmkEOib-m7z2evacq2C0PINzRMNOJQXueJ5pmOy5DDdkDqI-JvvPtzm6_sL7qNs8N-iZiekSNvh4TPD_WE_Pjw_vv5p_Xll48X52eXa9fUbV47VdfSInReW8Z7y73oHDrtrOJ130jPUPRaoZWsZ15jLzshaq6U9Uq1teYn5OV-bon-uWDKZgzJ4TDYCeclGVG-KjWIB0EmpSoHCij2oItzShG92cYw2nhjGJiddbMx_62bnXUD2sC_hNNDwtKN2N-3HTQX4MUBsMnZwUc7uZDuOcFl4XaD3uw5LOKuA0aTXMCpmA0RXTb9HB7a5S8_bKXs</recordid><startdate>2005</startdate><enddate>2005</enddate><creator>Sanlidag, Tamer</creator><creator>Akcali, Sinem</creator><creator>Ozbakkaloglu, Beril</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7U9</scope><scope>H94</scope><scope>7X8</scope></search><sort><creationdate>2005</creationdate><title>Serum hepatitis B DNA: stability in relation to multiple freeze–thaw procedures</title><author>Sanlidag, Tamer ; Akcali, Sinem ; Ozbakkaloglu, Beril</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c425t-c8227ae0bf9a13da3f6bcec9ca832d47f1e6d98ea71d1f9ed7b662388af885293</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Biological and medical sciences</topic><topic>DNA, Viral - blood</topic><topic>DNA, Viral - chemistry</topic><topic>Freeze and thaw</topic><topic>Freezing</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Hepatitis B - virology</topic><topic>Hepatitis B virus</topic><topic>Hepatitis B virus - genetics</topic><topic>Hepatitis B virus - isolation & purification</topic><topic>Hepatitis B virus - physiology</topic><topic>Hepatitis B virus DNA</topic><topic>Humans</topic><topic>Hybridization</topic><topic>Microbiology</topic><topic>Specimen Handling - methods</topic><topic>Stability</topic><topic>Techniques used in virology</topic><topic>Viral Load</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sanlidag, Tamer</creatorcontrib><creatorcontrib>Akcali, Sinem</creatorcontrib><creatorcontrib>Ozbakkaloglu, Beril</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Virology and AIDS Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of virological methods</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sanlidag, Tamer</au><au>Akcali, Sinem</au><au>Ozbakkaloglu, Beril</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Serum hepatitis B DNA: stability in relation to multiple freeze–thaw procedures</atitle><jtitle>Journal of virological methods</jtitle><addtitle>J Virol Methods</addtitle><date>2005</date><risdate>2005</risdate><volume>123</volume><issue>1</issue><spage>49</spage><epage>52</epage><pages>49-52</pages><issn>0166-0934</issn><eissn>1879-0984</eissn><coden>JVMEDH</coden><abstract>Quantitation of hepatitis B virus (HBV) DNA is often performed in specimens that have been frozen and thawed more than once. It is important to establish whether viral load measurements are affected by repeated freeze–thaw cycles. The effect of multiple freeze–thaw cycles on HBV DNA quantitation was carried out by testing serum specimens subjected to 1 (baseline) to 10 cycles with the appropriate Digene Hybrid Capture System.
Five HBV DNA-positive samples were selected at random from sera with concentrations ranging from 7
pg/ml to 3529
pg/ml and they were frozen and thawed up to 10 cycles and then tested for changes in HBV DNA levels. Negative control and positive standards were tested in triplicate; and all specimens were tested in duplicate. The stability of HBV DNA in serum was evaluated by scattergram analysis by determining the number of samples showing a ≥20% change in HBV DNA levels after freeze–thaw cycles.
With the exception of one sample (7
pg/ml) 10 cycles of freezing and thawing did not change significantly the HBV DNA quantity in any of the samples tested.
The results showed that the quantity of HBV DNA in four of five serum specimens subjected up to 10 freeze–thaw cycles was stable.</abstract><cop>London</cop><cop>Amsterdam</cop><cop>New York, NY</cop><pub>Elsevier B.V</pub><pmid>15582698</pmid><doi>10.1016/j.jviromet.2004.09.006</doi><tpages>4</tpages></addata></record> |
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subjects | Biological and medical sciences DNA, Viral - blood DNA, Viral - chemistry Freeze and thaw Freezing Fundamental and applied biological sciences. Psychology Hepatitis B - virology Hepatitis B virus Hepatitis B virus - genetics Hepatitis B virus - isolation & purification Hepatitis B virus - physiology Hepatitis B virus DNA Humans Hybridization Microbiology Specimen Handling - methods Stability Techniques used in virology Viral Load Virology |
title | Serum hepatitis B DNA: stability in relation to multiple freeze–thaw procedures |
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